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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1040 fasta sequence
[ATGAGTACTGTTCTAAAAGTCCCAGCAATAGATCTTTTTTTTGTTTCGAAGTTTTTGTCCGTATTAAATTTTT-ATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCAC-AAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG-TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA-GAGGA-GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTCCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCACATACCATCTCCAGATCCTTTCCATAATAATTATATGCCTTCAATCCTCTTGTTTTGCTAACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGCATGTCATCCATCATCTGCAGGGTCATGGGTGAAAGGAAATTTTCCCAGCAGAAAGAGCGTTCTCTTCCACTGCGTCTTGCTTCCTTCCATGCTTCGAACGCCTTAACAAGAGCAATGTGATCACTGCAGGAGTCACCAGCAAATGATCTTTTGACAGCATCAGCTTCTTCTTTCCTATCTATTGGGAGCACAAATGGATTACGATATGCAAGAGCAGC]
[+] EMBL CB678182 [ATGAGTACTGTTCTAAAAGTCCCAGCAATAGATCAAAAAAATGTTTCGAAGTTTTTGTCCGTATTAAATTTTT ATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCAC AAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAAAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTCCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCCGCACATAGGACA ]
[+] EMBL CB671714 [ TCTTTTTTTTGTTTCGAAGTTTTTGTCCGTATTAAATTTTT ATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCAC AAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTCCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCACATACCATCTCCAGATCCTTTCCATAATAATTATATGCCTTCAATCCTCTTGTTTTGCTAACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGCATGTCA ]
[+] EMBL CA759071 [ ttTTTTTTTTTTTTTTTTTTTTTTGGCCGTATTAAATTTTT ATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCACAAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAAAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAAAGCTGTCCCCTTGTCTCGTC ]
[+] EMBL CA759070 [ ttTTTTTTTTTTTTTTTTTTTTTTGGCCGTATTAAATTTTT ATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCACAAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAAAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAAAGCTGTCCCCTTGTCTCGTC ]
[-] EMBL CA764270 [ AATTTTTAATATTGATTAATCTATTTTATCCCGTTTGTCCATGTAAAAAGCANCTTGCTCCCGGAAAATCAC AAAAAATAAGGGGTCANCTCTACCAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACGTTTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAA ]
[+] EMBL CB672570 [ TTTATCTATTTTACCCCGTTGGCCCATGTAAAAAGCAACTTGCTCCCGGAAAATCAC AAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGCATAGCTGCTATTTTAATTCTAAAACTGCTATATGGAACCGGTAAAGATAGCATCTACTGGAGAACG TTTTGGCTGTGCAGCATATCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGATTGCCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACTCCTTGGTGCACAAAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGATTTGCTCTCACTGAGAGAACCACCAAATGAGGATGAACAGCATAGACCGAAATGTTTGAGGAATCCCTGACATAAATGCTACCAGATATAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCACATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGACCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCACATACCATCTCCAGATCCTTTCCATAATAATTA ]
[-] EMBL C99127 [ gTCT AAANTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGT ]
[-] EMBL CB671713 [ CCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTCCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCACATACCATCTCCAGATCCTTTCCATAATAATTATATGCCTTCAATCCTCTTGTTTTGCTAACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGCATGTCATCCATCATCTGCAGGGTCATGGGTGAAAGGAAATTTTCCCAGCAGAAAGAGCGTTCTCTTCCACTGCGTCTTGCTTCCTTCCATGCTTCGAACGCCTTAACAAGAGCAATGTGATCACTGCAGGAGTCACCAGCAAATGATCTTTTGACAGCATCAGCTTCTTCTTTCCTATCTATTGGGAGCACAAATGGATTACGATATGCAAGAGCAGC]
[-] EMBL CB678181 [ CCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTCCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCACATACCATCTCCAGATCCTTTCCATAATAATTATATGCCTTCAATCCTCTTGTTTTGCTAACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGCATGTCATCCATCATCTGCAGGGTCATGGGTGAAAGGAAATTTTCCCAGCAGAAAGAGCGTTCTCTTCCACTGCGTCTTGCTTCCTTCCATGCTTCGAACGCCTTAACAAGAGCAATGTGATCACTGCAGGAGTCACCAGCAAATGATCTTTTGACAGCATCAGCTTCTTCTTTCCTATCTATTGGGAGCACAAATGGATTACGATATGCAAGAGCAGC]
consensusID : consensus_12922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 319 fasta sequence
[TTTTTTTAGATCAAAAAAATGTTTCGAAGTTTTTGTCCGTATTAAATTTTTATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCACAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACGTTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGGCAG]
[-] EMBL C99128 [TTTTTTTAGATCAAAAAAATGTTTCGAAGTTTTTGTCCGTATTAAATTTTTATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCACAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACGTTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGGCAG]
[-] EMBL BQ908573 [ tttttTATTAAATTTTTATATTGATTTATCTATTTTATCCCG TTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCACAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTGGCTGTGCAGCAGTTCTACTGCTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12922#0 ATGAGTACTGTTCTAAAAGTCCCAGCAATAGATCTTTTTTTTGTTTCGAAGTTTTTGTCC 60
consensus_12922#1 ----------------------TTTTTTTAGATCAAAAAAATGTTTCGAAGTTTTTGTCC 38
****** *******************
consensus_12922#0 GTATTAAATTTTTATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACT 120
consensus_12922#1 GTATTAAATTTTTATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACT 98
************************************************************
consensus_12922#0 TGCTCCCGGAAAATCACAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGG 180
consensus_12922#1 TGCTCCCGGAAAATCACAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGG 158
************************************************************
consensus_12922#0 GAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGA 240
consensus_12922#1 GAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGA 218
************************************************************
consensus_12922#0 ACCGGTATAGATAGCATCTAGTGGTGAACGTTTTGGCTGTGCAGCAGTTCTACTGCTGCC 300
consensus_12922#1 ACCGGTATAGATAGCATCTAGTGGTGAACGTTTTGGCTGTGCAGCAGTTCTACTGCTGCC 278
************************************************************
consensus_12922#0 GCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGG 360
consensus_12922#1 GCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGGCAG------------------- 319
************************************* *
consensus_12922#0 AGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCA 420
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 GAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGA 480
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 GAACCACCAAAGAGGAGAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATG 540
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 CTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCC 600
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 GCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTC 660
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 CTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCA 720
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 CATACCATCTCCAGATCCTTTCCATAATAATTATATGCCTTCAATCCTCTTGTTTTGCTA 780
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 ACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGCATGTCATCCATCATCTGC 840
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 AGGGTCATGGGTGAAAGGAAATTTTCCCAGCAGAAAGAGCGTTCTCTTCCACTGCGTCTT 900
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 GCTTCCTTCCATGCTTCGAACGCCTTAACAAGAGCAATGTGATCACTGCAGGAGTCACCA 960
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 GCAAATGATCTTTTGACAGCATCAGCTTCTTCTTTCCTATCTATTGGGAGCACAAATGGA 1020
consensus_12922#1 ------------------------------------------------------------
consensus_12922#0 TTACGATATGCAAGAGCAGC 1040
consensus_12922#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||