These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1040 fasta sequence [ATGAGTACTGTTCTAAAAGTCCCAGCAATAGATCTTTTTTTTGTTTCGAAGTTTTTGTCCGTATTAAATTTTT-ATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCAC-AAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG-TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA-GAGGA-GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTCCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCACATACCATCTCCAGATCCTTTCCATAATAATTATATGCCTTCAATCCTCTTGTTTTGCTAACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGCATGTCATCCATCATCTGCAGGGTCATGGGTGAAAGGAAATTTTCCCAGCAGAAAGAGCGTTCTCTTCCACTGCGTCTTGCTTCCTTCCATGCTTCGAACGCCTTAACAAGAGCAATGTGATCACTGCAGGAGTCACCAGCAAATGATCTTTTGACAGCATCAGCTTCTTCTTTCCTATCTATTGGGAGCACAAATGGATTACGATATGCAAGAGCAGC] [+] EMBL CB678182 [ATGAGTACTGTTCTAAAAGTCCCAGCAATAGATCAAAAAAATGTTTCGAAGTTTTTGTCCGTATTAAATTTTT ATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCAC AAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAAAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTCCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCCGCACATAGGACA ] [+] EMBL CB671714 [ TCTTTTTTTTGTTTCGAAGTTTTTGTCCGTATTAAATTTTT ATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCAC AAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTCCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCACATACCATCTCCAGATCCTTTCCATAATAATTATATGCCTTCAATCCTCTTGTTTTGCTAACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGCATGTCA ] [+] EMBL CA759071 [ ttTTTTTTTTTTTTTTTTTTTTTTGGCCGTATTAAATTTTT ATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCACAAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAAAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAAAGCTGTCCCCTTGTCTCGTC ] [+] EMBL CA759070 [ ttTTTTTTTTTTTTTTTTTTTTTTGGCCGTATTAAATTTTT ATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCACAAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAAAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAAAGCTGTCCCCTTGTCTCGTC ] [-] EMBL CA764270 [ AATTTTTAATATTGATTAATCTATTTTATCCCGTTTGTCCATGTAAAAAGCANCTTGCTCCCGGAAAATCAC AAAAAATAAGGGGTCANCTCTACCAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACGTTTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAA ] [+] EMBL CB672570 [ TTTATCTATTTTACCCCGTTGGCCCATGTAAAAAGCAACTTGCTCCCGGAAAATCAC AAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGCATAGCTGCTATTTTAATTCTAAAACTGCTATATGGAACCGGTAAAGATAGCATCTACTGGAGAACG TTTTGGCTGTGCAGCATATCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGATTGCCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACTCCTTGGTGCACAAAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGATTTGCTCTCACTGAGAGAACCACCAAATGAGGATGAACAGCATAGACCGAAATGTTTGAGGAATCCCTGACATAAATGCTACCAGATATAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCACATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGACCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCACATACCATCTCCAGATCCTTTCCATAATAATTA ] [-] EMBL C99127 [ gTCT AAANTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGGAGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGT ] [-] EMBL CB671713 [ CCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCAGAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGAGAACCACCAAA GAGGA GAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATGCTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTCCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCACATACCATCTCCAGATCCTTTCCATAATAATTATATGCCTTCAATCCTCTTGTTTTGCTAACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGCATGTCATCCATCATCTGCAGGGTCATGGGTGAAAGGAAATTTTCCCAGCAGAAAGAGCGTTCTCTTCCACTGCGTCTTGCTTCCTTCCATGCTTCGAACGCCTTAACAAGAGCAATGTGATCACTGCAGGAGTCACCAGCAAATGATCTTTTGACAGCATCAGCTTCTTCTTTCCTATCTATTGGGAGCACAAATGGATTACGATATGCAAGAGCAGC] [-] EMBL CB678181 [ CCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCCGCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTCCTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCACATACCATCTCCAGATCCTTTCCATAATAATTATATGCCTTCAATCCTCTTGTTTTGCTAACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGCATGTCATCCATCATCTGCAGGGTCATGGGTGAAAGGAAATTTTCCCAGCAGAAAGAGCGTTCTCTTCCACTGCGTCTTGCTTCCTTCCATGCTTCGAACGCCTTAACAAGAGCAATGTGATCACTGCAGGAGTCACCAGCAAATGATCTTTTGACAGCATCAGCTTCTTCTTTCCTATCTATTGGGAGCACAAATGGATTACGATATGCAAGAGCAGC] consensusID : consensus_12922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 319 fasta sequence [TTTTTTTAGATCAAAAAAATGTTTCGAAGTTTTTGTCCGTATTAAATTTTTATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCACAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACGTTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGGCAG] [-] EMBL C99128 [TTTTTTTAGATCAAAAAAATGTTTCGAAGTTTTTGTCCGTATTAAATTTTTATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCACAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACGTTTTGGCTGTGCAGCAGTTCTACTGCTGCCGCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGGCAG] [-] EMBL BQ908573 [ tttttTATTAAATTTTTATATTGATTTATCTATTTTATCCCG TTGTCCATGTAAAAAGCAACTTGCTCCCGGAAAATCACAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGGGAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGAACCGGTATAGATAGCATCTAGTGGTGAACG TTTGGCTGTGCAGCAGTTCTACTGCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12922#0 ATGAGTACTGTTCTAAAAGTCCCAGCAATAGATCTTTTTTTTGTTTCGAAGTTTTTGTCC 60 consensus_12922#1 ----------------------TTTTTTTAGATCAAAAAAATGTTTCGAAGTTTTTGTCC 38 ****** ******************* consensus_12922#0 GTATTAAATTTTTATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACT 120 consensus_12922#1 GTATTAAATTTTTATATTGATTTATCTATTTTATCCCGTTTGTCCATGTAAAAAGCAACT 98 ************************************************************ consensus_12922#0 TGCTCCCGGAAAATCACAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGG 180 consensus_12922#1 TGCTCCCGGAAAATCACAAAAAATAAGGGGTCAACTCTAACAAGCAAACGAAATTGAAGG 158 ************************************************************ consensus_12922#0 GAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGA 240 consensus_12922#1 GAGTATACAAAAGCACTCCCTGGTATAGCTGTTATTTTAGTTCTAAAACTGCTATATGGA 218 ************************************************************ consensus_12922#0 ACCGGTATAGATAGCATCTAGTGGTGAACGTTTTGGCTGTGCAGCAGTTCTACTGCTGCC 300 consensus_12922#1 ACCGGTATAGATAGCATCTAGTGGTGAACGTTTTGGCTGTGCAGCAGTTCTACTGCTGCC 278 ************************************************************ consensus_12922#0 GCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGCAGGCTCCTCGATCTTCCTCTGG 360 consensus_12922#1 GCCACAACGCCTTTTCCTTCAGAAAATATGTCAAGTGGCAG------------------- 319 ************************************* * consensus_12922#0 AGGAGTTTGTCCAATTCACCTCTTAATCTCTGGATCAACTCTATGATACGCCTTGGTGCA 420 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 GAGAAATGAAGATACCCCCCAAGCATCTCAATGCCTTCTCCAGTTTTGCTCTCACTGAGA 480 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 GAACCACCAAAGAGGAGAAGAGCATAGTCGGAAATGTTTGTGGAATCCCTGACATAAATG 540 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 CTAGCAGTTTTAACCTTCTCGCTATAAACCAGATAAGGCAATGGGAATTGGTGAATTCCC 600 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 GCATTGACTGATGATGGATGGATATCCACTTTGCCAACATCTTTGGTGTAAAACGCTGTC 660 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 CTCTTGCCTCGTCTTTTGCACTGAACGACATTTGGGTAAAGCCCAGCACATAGGACAGCA 720 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 CATACCATCTCCAGATCCTTTCCATAATAATTATATGCCTTCAATCCTCTTGTTTTGCTA 780 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 ACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGCATGTCATCCATCATCTGC 840 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 AGGGTCATGGGTGAAAGGAAATTTTCCCAGCAGAAAGAGCGTTCTCTTCCACTGCGTCTT 900 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 GCTTCCTTCCATGCTTCGAACGCCTTAACAAGAGCAATGTGATCACTGCAGGAGTCACCA 960 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 GCAAATGATCTTTTGACAGCATCAGCTTCTTCTTTCCTATCTATTGGGAGCACAAATGGA 1020 consensus_12922#1 ------------------------------------------------------------ consensus_12922#0 TTACGATATGCAAGAGCAGC 1040 consensus_12922#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||