These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1020 fasta sequence [GTCTCTGAACATGACACATTTAATTCAGAGTTAAGCTCAAGTCTGTCAAGAGGAAAATTAATAATTGCATTAGCATATTGCCTAGCTATAATACTAGTAGTTTCAGTTAGATCCTTGACAAGTACTCCATTTTGGTCTCTATCCAGTTCAGGCTTCTTTCCCTCCCTTTTTAAGCCCACATCACCTTCCATTGCCACCCAAAGAAAACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT-GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA-AGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATGCAGATTGA-GCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATATATACATGCATGGTTGCCCAAAAAAAAAAGAGAGGAAAGTGTTAAAATTGTATCGTAAAAA] [+] EMBL AK073249 [GTCTCTGAACATGACACATTTAATTCAGAGTTAAGCTCAAGTCTGTCAAGAGGAAAATTAATAATTGCATTAGCATATTGCCTAGCTATAATACTAGTAGTTTCAGTTAGATCCTTGACAAGTACTCCATTTTGGTCTCTATCCAGTTCAGGCTTCTTTCCCTCCCTTTTTAAGCCCACATCACCTTCCATTGCCACCCAAAGAAAACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATATATACATG ] [+] EMBL CF291578 [ AACCTCTCTCT AAGTGTCCT ACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCA ] [+] EMBL CF317388 [ ACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCGNACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGGCCGCAACACCATGAATCATATCATGGTGATGGGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGT ] [+] EMBL CF278172 [ ACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGTGA ] [+] EMBL CF334133 [ TCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCGNACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGATGGGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGTGA ] [+] EMBL CA755554 [ TCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCANATGGAAGCAAAGCA AGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTGCAGGATATGGTACTG GTTTTTTTCTATTTCTTTTCTTTTTAGATTGGGATTTGGGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCA ] [+] EMBL BI813056 [ CAAGGTGGCAACTGGCAACAGAAGAAATTAAGCCACTCAAATGGAA CCAAGCACAGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCAT CAGATTGACGCCACTGTGAATATTATACTAGCATAAGTTCCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGT CAGAAATGATGCATGTGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACCAAGCACGTATATATACATGCATGGTTGCCCAAAAAAAAAAGAGAGGAAAGTGTTAAAATTGTATCGTAAAAA] [-] EMBL CB238452 [ ATGCATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTG TTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAGGTTGAGAGTTGTGTAna ] [+] EMBL BI802954 [ ATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTCCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTCCAGAAATGATGCATGTGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATA CCCCCTCGAGGAATATGCCAATAAAAAAAaaa ] [+] EMBL AU175210 [ AAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATATATACATGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAaaa ] consensusID : consensus_12932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [AAGCCTTGTTTAGGTGGTAGAAATGAAGGTTGGTAAATTAATTGTGGTAGGCATCCAGATTGAGCACTTGTGAATATTATACTAGCATAAGTTCCGGTAAAGGTTACGGTTTTTTTTCAATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAAAGATAATGCATGGGTGCAAGTTTTCCCAAGGAGATTTTTGCCCCATAATTAAAGTGGAAAGTTAAAAGTTGTGTATAGTCCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTCCAAAGCAGGTATATATACAGGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF278173 [AAGCCTTGTTTAGGTGGTAGAAATGAAGGTTGGTAAATTAATTGTGGTAGGCATCCAGATTGAGCACTTGTGAATATTATACTAGCATAAGTTCCGGTAAAGGTTACGGTTTTTTTTCAATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAAAGATAATGCATGGGTGCAAGTTTTCCCAAGGAGATTTTTGCCCCATAATTAAAGTGGAAAGTTAAAAGTTGTGTATAGTCCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTCCAAAGCAGGTATATATACAGGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12932#0 GTCTCTGAACATGACACATTTAATTCAGAGTTAAGCTCAAGTCTGTCAAGAGGAAAATTA 60 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 ATAATTGCATTAGCATATTGCCTAGCTATAATACTAGTAGTTTCAGTTAGATCCTTGACA 120 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 AGTACTCCATTTTGGTCTCTATCCAGTTCAGGCTTCTTTCCCTCCCTTTTTAAGCCCACA 180 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 TCACCTTCCATTGCCACCCAAAGAAAACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCC 240 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 ATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGA 300 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 AGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGA 360 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 AAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATT 420 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 TCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCC 480 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 TCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGC 540 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 GGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT 600 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGC 660 consensus_12932#1 ------------------------------------------------------------ consensus_12932#0 AAGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATG 720 consensus_12932#1 -----AAGCCTTGTTTAGGTGGTAGAAATGAAGGTTGGTAAATTAATTGTGGTAGGCATC 55 *** **** *********** **** ********* ************* **** consensus_12932#0 CAGATTGAGCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTGTTTTTT 780 consensus_12932#1 CAGATTGAGCACTTGTGAATATTATACTAGCATAAGTTCCGGTAAAGGTTACGGTTTTTT 115 *********** ************************* * *** * ***** ******* consensus_12932#0 TTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGG 840 consensus_12932#1 TT-CAATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAAAGATAATGCATGGG 174 ** * **************************************** * ** ********* consensus_12932#0 TGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGT 900 consensus_12932#1 TGCAAGTTTTCCCAAGGAGATTTTTGCCCCATAATTAAAGTGGAAAGTTAAAAGTTGTGT 234 ******** ************ * *** ********* *********** * ******** consensus_12932#0 ATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATAT 960 consensus_12932#1 ATAGTCCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTCCAAAGCAGGTATAT 294 ***** *************************************** ******* ****** consensus_12932#0 ATACATGCATGGTTGCCCAAAAAAAAAAGAGAGGAAAGTGTTAAAATTGTATCGTAAAAA 1020 consensus_12932#1 ATACAGGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------- 345 ***** *********** ********** * * *** **** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||