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Oryza sativa
cluster # 12932 cluster # 12932       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12932#0 length = 1020 sequences # 10  
consensus_12932#1 length = 345 sequences # 1  

consensusID : consensus_12932#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1020
fasta sequence
                              [GTCTCTGAACATGACACATTTAATTCAGAGTTAAGCTCAAGTCTGTCAAGAGGAAAATTAATAATTGCATTAGCATATTGCCTAGCTATAATACTAGTAGTTTCAGTTAGATCCTTGACAAGTACTCCATTTTGGTCTCTATCCAGTTCAGGCTTCTTTCCCTCCCTTTTTAAGCCCACATCACCTTCCATTGCCACCCAAAGAAAACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT-GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA-AGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATGCAGATTGA-GCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATATATACATGCATGGTTGCCCAAAAAAAAAAGAGAGGAAAGTGTTAAAATTGTATCGTAAAAA]

[+] EMBL AK073249             [GTCTCTGAACATGACACATTTAATTCAGAGTTAAGCTCAAGTCTGTCAAGAGGAAAATTAATAATTGCATTAGCATATTGCCTAGCTATAATACTAGTAGTTTCAGTTAGATCCTTGACAAGTACTCCATTTTGGTCTCTATCCAGTTCAGGCTTCTTTCCCTCCCTTTTTAAGCCCACATCACCTTCCATTGCCACCCAAAGAAAACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATATATACATG                                                     ]
[+] EMBL CF291578             [                                                                                                                                                                                                             AACCTCTCTCT AAGTGTCCT ACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCA                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF317388             [                                                                                                                                                                                                              ACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCGNACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGGCCGCAACACCATGAATCATATCATGGTGATGGGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGT                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF278172             [                                                                                                                                                                                                              ACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGTGA                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF334133             [                                                                                                                                                                                                                 TCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCGNACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGATGGGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGTGA                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA755554             [                                                                                                                                                                                                                                                     TCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCANATGGAAGCAAAGCA AGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTGCAGGATATGGTACTG GTTTTTTTCTATTTCTTTTCTTTTTAGATTGGGATTTGGGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCA                                                                                                                                                                      ]
[+] EMBL BI813056             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAAGGTGGCAACTGGCAACAGAAGAAATTAAGCCACTCAAATGGAA CCAAGCACAGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCAT CAGATTGACGCCACTGTGAATATTATACTAGCATAAGTTCCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGT CAGAAATGATGCATGTGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACCAAGCACGTATATATACATGCATGGTTGCCCAAAAAAAAAAGAGAGGAAAGTGTTAAAATTGTATCGTAAAAA]
[-] EMBL CB238452             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATGCATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTG TTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAGGTTGAGAGTTGTGTAna                                                                                                                     ]
[+] EMBL BI802954             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTCCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTCCAGAAATGATGCATGTGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATA CCCCCTCGAGGAATATGCCAATAAAAAAAaaa                                                                                    ]
[+] EMBL AU175210             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATATATACATGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAaaa                    ]


>consensus_12932#0 GTCTCTGAACATGACACATTTAATTCAGAGTTAAGCTCAAGTCTGTCAAGAGGAAAATTA ATAATTGCATTAGCATATTGCCTAGCTATAATACTAGTAGTTTCAGTTAGATCCTTGACA AGTACTCCATTTTGGTCTCTATCCAGTTCAGGCTTCTTTCCCTCCCTTTTTAAGCCCACA TCACCTTCCATTGCCACCCAAAGAAAACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCC ATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGA AGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGA AAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATT TCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCC TCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGC GGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGC AAGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATG CAGATTGAGCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTGTTTTTT TTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGG TGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGT ATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATAT ATACATGCATGGTTGCCCAAAAAAAAAAGAGAGGAAAGTGTTAAAATTGTATCGTAAAAA



consensusID : consensus_12932#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence
                              [AAGCCTTGTTTAGGTGGTAGAAATGAAGGTTGGTAAATTAATTGTGGTAGGCATCCAGATTGAGCACTTGTGAATATTATACTAGCATAAGTTCCGGTAAAGGTTACGGTTTTTTTTCAATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAAAGATAATGCATGGGTGCAAGTTTTCCCAAGGAGATTTTTGCCCCATAATTAAAGTGGAAAGTTAAAAGTTGTGTATAGTCCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTCCAAAGCAGGTATATATACAGGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF278173             [AAGCCTTGTTTAGGTGGTAGAAATGAAGGTTGGTAAATTAATTGTGGTAGGCATCCAGATTGAGCACTTGTGAATATTATACTAGCATAAGTTCCGGTAAAGGTTACGGTTTTTTTTCAATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAAAGATAATGCATGGGTGCAAGTTTTCCCAAGGAGATTTTTGCCCCATAATTAAAGTGGAAAGTTAAAAGTTGTGTATAGTCCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTCCAAAGCAGGTATATATACAGGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12932#1 AAGCCTTGTTTAGGTGGTAGAAATGAAGGTTGGTAAATTAATTGTGGTAGGCATCCAGAT TGAGCACTTGTGAATATTATACTAGCATAAGTTCCGGTAAAGGTTACGGTTTTTTTTCAA TTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAAAGATAATGCATGGGTGCAAG TTTTCCCAAGGAGATTTTTGCCCCATAATTAAAGTGGAAAGTTAAAAGTTGTGTATAGTC CCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTCCAAAGCAGGTATATATACAG GCATGGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12932#0      GTCTCTGAACATGACACATTTAATTCAGAGTTAAGCTCAAGTCTGTCAAGAGGAAAATTA 60
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      ATAATTGCATTAGCATATTGCCTAGCTATAATACTAGTAGTTTCAGTTAGATCCTTGACA 120
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      AGTACTCCATTTTGGTCTCTATCCAGTTCAGGCTTCTTTCCCTCCCTTTTTAAGCCCACA 180
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      TCACCTTCCATTGCCACCCAAAGAAAACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCC 240
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      ATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGA 300
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      AGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGA 360
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      AAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATT 420
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      TCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCC 480
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      TCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGC 540
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      GGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT 600
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGC 660
consensus_12932#1      ------------------------------------------------------------
                                                                                   

consensus_12932#0      AAGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATG 720
consensus_12932#1      -----AAGCCTTGTTTAGGTGGTAGAAATGAAGGTTGGTAAATTAATTGTGGTAGGCATC 55
                            *** **** *********** **** ********* ************* **** 

consensus_12932#0      CAGATTGAGCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTGTTTTTT 780
consensus_12932#1      CAGATTGAGCACTTGTGAATATTATACTAGCATAAGTTCCGGTAAAGGTTACGGTTTTTT 115
                       ***********  ************************* * *** * ***** *******

consensus_12932#0      TTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGG 840
consensus_12932#1      TT-CAATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAAAGATAATGCATGGG 174
                       ** * **************************************** * ** *********

consensus_12932#0      TGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGT 900
consensus_12932#1      TGCAAGTTTTCCCAAGGAGATTTTTGCCCCATAATTAAAGTGGAAAGTTAAAAGTTGTGT 234
                       ******** ************ * *** ********* *********** * ********

consensus_12932#0      ATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATAT 960
consensus_12932#1      ATAGTCCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTCCAAAGCAGGTATAT 294
                       ***** *************************************** ******* ******

consensus_12932#0      ATACATGCATGGTTGCCCAAAAAAAAAAGAGAGGAAAGTGTTAAAATTGTATCGTAAAAA 1020
consensus_12932#1      ATACAGGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------- 345
                       ***** *********** ********** * *  ***     ****    *         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)