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Oryza sativa
cluster # 12933 cluster # 12933       Sequences # 11       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12933#0 length = 977 sequences # 11  

consensusID : consensus_12933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 977
fasta sequence
                              [AACAGAGAAGCATTTCCTCGAACACATCGCCGTCGCCGCCCTCCATGGCCGCTCCCACCGCAGCAGCTCTCTCCACCCTCTCCACCGCCAGCGTCACCTCCGGCAAGCGCTTCATCACCTCCTCCTTCTCCCTCTCCTTCTCCTCCCGCCCCCTCGCAACAGGCGTCCGCGCCGCGGGGGCGAGAGCGGCGCGGAGGTCGGCGGCGTCGGCGTCCACCGTGGTGGCGACCATCGCCGTCGGAGACAAGCTCCCCGACGCGACGCTGTCCTACTTCGACCCGGCGGACGGCGAGCTGAAGACGGTGACGGTGGCGGAGCTGACGGCGGGCAGGAAGGCGGTGCTGTTCGCGGTGCCCGGCGC-GTTCACGCCGACGTGCTCGCAGAAGCACCTCCCGGGGTTCATCGAGAAGGCCGGGGAGCTCCA-CGCCAAGGGGGTGGACGCCATCGCCTGCGTGTCGGTGAAC-GACGC-GTTCGTGATGCGCGCGTGGAAGGAGAGCCTGGGCCTCGGCGACG-CCGACGTGCTCCTCCTC-TCCG-ACGGCAACCTGGAGCTCAC-G-CG-CGCGCT-CGGC-GTCGA-----GATGGACCTCTCCGACAAGCCCATGGGGCT-C-GGC-GTCA-GGTC-GCG-CC-GCTACGCGCTCCTCGCCGACGACGGCGTCGTCA-AGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCAAGGCGCTCTGAAGATGGAATCCGAGCTCTCGTAGGTGGCAACAATGGCAGGATCAGCCCGTTGCTCTCGCGCGTTGGTGAGTAGCGTCGTCGTTGTGAAGAGGAAATTTTGTGTGTGTTTTTTTTCGGTTGAATGTTGCATGCCATGTGCTTGACGAAATGACGGAATAACAAAAGAAAAAAAACTACTTTTATTTTTTTGTTGAAAAAAAAAAACCATGTGTTTGACGAAATGTCGAGATATGAAAGCTGTGAAATCGCTTACGT]

[+] EMBL AK065909             [AACAGAGAAGCATTTCCTCGAACACATCGCCGTCGCCGCCCTCCATGGCCGCTCCCACCGCAGCAGCTCTCTCCACCCTCTCCACCGCCAGCGTCACCTCCGGCAAGCGCTTCATCACCTCCTCCTTCTCCCTCTCCTTCTCCTCCCGCCCCCTCGCAACAGGCGTCCGCGCCGCGGGGGCGAGAGCGGCGCGGAGGTCGGCGGCGTCGGCGTCCACCGTGGTGGCGACCATCGCCGTCGGAGACAAGCTCCCCGACGCGACGCTGTCCTACTTCGACCCGGCGGACGGCGAGCTGAAGACGGTGACGGTGGCGGAGCTGACGGCGGGCAGGAAGGCGGTGCTGTTCGCGGTGCCCGGCGC GTTCACGCCGACGTGCTCGCAGAAGCACCTCCCGGGGTTCATCGAGAAGGCCGGGGAGCTCCA CGCCAAGGGGGTGGACGCCATTGCCTGCGTGTCGGTGAAC GACGC GTTCGTGATGCGCGCGTGGAAGGAGAGCCTGGGCCTCGGCGACG CCGACGTGCTCCTCCTC TCCG ACGGCAACCTGGAGCTCAC G CG CGCGCT CGGC GTCGA     GATGGACCTCTCCGACAAGCCCATGGGGCT C GGC GTCA GGTC GCG CC GCTACGCGCTCCTCGCCGACGACGGCGTCGTCA AGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCAAGGCGCTCTGAAGATGGAATCCGAGCTCTCGTAGGTGGCAACAATGGCAGGATCAGCCCGTTGCTCTCGCGCGTTGGTGAGTAGCGTCGTCGTTGTGAAGAGGAAATTTTGTGTGTGTTTTTTTTCGGTTGAATGTTGCATGCCATGTGCTTGACGAAATGACGGAATAACAAAAGAAAAAA                                                                                    ]
[+] EMBL AK061629             [  CAGAGAAGCATTTCCTCGAACACATCGCCGTCGCCGCCCTCCATGGCCGCTCCCACCGCAGCAGCTCTCTCCACCCTCTCCACCGCCAGCGTCACCTCCGGCAAGCGCTTCATCACCTCCTCCTTCTCCCTCTCCTTCTCCTCCCGCCCCCTCGCAACAGGCGTCCGCGCCGCGGGGGCGAGAGCGGCGCGGAGGTCGGCGGCGTCGGCGTCCACCGTGGTGGCGACCATCGCCGTCGGAGACAAGCTCCCCGACGCGACGCTGTCCTACTTCGACCCGGCGGACGGCGAGCTGAAGACGGTGACGGTGGCGGAGCTGACGGCGGGCAGGAAGGCGGTGCTGTTCGCGGTGCCCGGCGC GTTCACGCCGACGTGCTCGCAGAAGCACCTCCCGGGGTTCATCGAGAAGGCCGGGGAGCTCCA CGCCAAGGGGGTGGACGCCATTGCCTGCGTGTCGGTGAAC GACGC GTTCGTGATGCGCGCGTGGAAGGAGAGCCTGGGCCTCGGCGACG CCGACGTGCTCCTCCTC TCCG ACGGCAACCTGGAGCTCAC G CG CGCGCT CGGC GTCGA     GATGGACCTCTCCGACAAGCCCATGGGGCT C GGC GTCA GGTC GCG CC GCTACGCGCTCCTCGCCGACGACGGCGTCGTCA AGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCAAGGCGCTCTGAAGATGGAATCCGAGCTCTCGTAGGTGGCAACAATGGCAGGATCAGCCCGTTGCTCTCGCGCGTTGGTGAGTAGCGTCGTCGTTGTGAAGAGGAAATTTTGTGTGTGTTTTTTTTCGGTTGAATGTTGCATGCCATGTGCTTGACGAAATGACGGAATAACAAAAGAAAAAAAACTACTTTTATTTTTTTGTTGAAATTTGCAAACCATGTGTTTGACGAAATGTCGAGATATGAAAGCTGTGAAATCGCTTACGT]
[+] EMBL AA754428             [      cgagatthnCCNCGAACACATCGCCGTCGCCGCCCTCCATGGCCGNTHCCACCGCAGCAGCTCTCTCCACCCTCTCCGCCGCCAGCGTCACCTCCGGCAAGCGCTTCATCACCTCCTCCTTCTCCCTCTCCTTCTCCTCCCGCCCCCTCGCAACAGGCGTCCGCGCCGC GGGGCGAGAGCGGCGCGGAGGTCGGCGGCGTCGGCGTCCACCGTGGTGGCGACCATCGCCGTCGGAGACAAGCTCCCCGACGCGACGSTGTCCTACTTCGACCCGGCGGACGGCGAGCTGAAGACGGTGACGGTGGCGGA STGACGGCGGGCAGGAAGGCGGTGCTGTTCGCGGTGCCCGGCGC GTTCACG CGACGTGCTCGCAGAAGCACCTCCCGGGGTTCATCGAGAAGGCCGGGGAGCTCCA CGCCAAGGGGGTGGACGCCATCGCCTGCGTGTCGGTGAAC GACGC GTTCGTGATGCGCGCGTGGAAGGAGAGCCTGGGCCTYGGCGACG CCACCGTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BE230249             [                                                                                                                                                                 GGCGTCCGCGCCGCGGGGGCGAGAGCGGCGCGGAGGTCGGCGGCGTCGGCGTCCACCGTGGTGGCGACCATCGCCGTCGGAGACAAGCTCCCCGACGCGACGCTGTCCTACTTCGACCCGGCGGACGGCGAGCTGAAGACGGTGACGGTGGCGGAGCTGACGGCGGGCAGGAAGGCGGTGCTGTTCGCGGTGCCCGGCGC GTTCACGCCGACGTGCTCGCAGAAGCACCTCCCGGGGTTCATCGAGAAGGCCGGGGAGCTCCA CGCCAAGGGGGTGGACGCCATCGCCTGCGTGTCGGTGAAC GACGC GTTCGTGATGCGCGCGTGGAAGGAGAGCCTGGGCCTCGGCGACG CCGACGTGCTCCTCCTC TCCG ACGGCAACCTGGAGCTCAC G CG CGCGCT CGGC GTCGAGNGGGGATGGACCTCTCCGACAAGCCCATGGGGCT C GGC GTCA GGTC GCG CC GTTACTCGCTCCTCGCCGACGACGGCGTCGTCA AGGTGCT                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BE230554             [                                                                                                                                                                 GGCGTCCGCGCCGCGGGGGCGAGAGCGGCGCGGAGGTCGGCGGCGTCGGCGTCCACCGTGGTGGCGACCATCGCCGTCGGAGACAAGCTCCCCGACGCGACGCTGTCCTACTTCGACCCGGCGGACGGCGAGCTGAAGACGGTGACGGTGGCGGAGCTGACGGCGGGCAGGAAGGCGGTGCTGTTCGCGGTGCCCGGCGC GTTCACGCCGACGTGCTCGCAGAAGCACCTCCCGGGGTTCATCGAGAAGGCCGGGGAGCTCCA CGCCAAGGGGGTGGACGCCATCGCCTGCGTGTCGGTGAAC GACGC GTTCGTGATGCGCGCGTGGAAAGAGAGCCTGGGCCTCGGCGACG CCGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM038665             [                                                                                                                                                                                                                                                                                                                             CTGAC GC GGCAGGAA GCGGT CTGTTCGCGGTNCCCGGCGCTGTTCAC CCGACGTGCTCGCAGAAGCACCTCC  GGGTTCATCGAGAA GCCGGGGAGCTCCA CGCCAAGGGGGTGGACGCCATCGCCTGCGT TCGGTGAAC GACGCAGTTCGTGATGCGCGCGTGGAAGGAGAGCCT GGCCTCGGCGACG CCGACGTGCTCCTCCTC TCCG ACGGCAACCTGGAGCTCAC G CG CGCGCT CGGCAGTCGA     GATGGACCTCTCCGACAAGCCCATGGGGCT C GGC GTCA GGTC GCG CCAGCTACGCGCTCCTCGCCGACGACGGCGTCGTCA AGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCAAGGCGCTCTGAAGATGGAATCCGAGCTCTCGTAGGTGGCAACAATGGCAGGATCAGCCCGTTGCTCTCGCGCGTTGGTGAGTAGCGTCGTCGTTGTGAGGAGGAAATTTTGTGTGTGTTTTTTTTCGGTTGAATGTTGCAT CCATGTGCTTGACGAAATGACGGAATAACAAAAGAAAAAAAACTACTTT  TTTTTTT    AAAAAAAAAAA                                                   ]
[+] EMBL BM419893             [                                                                                                                                                                                                                                                                                                                                                                                                          CGGGGTTCATCGAGAA GCCGGGGAGCTCCACCGCCAA GGGGT GACGCCATCGCCTGCGTGTCGGTGAAC GACGC GTTCGTGATGCGCGCGTGGAAGGAGAGCCT GGCCTCGGCGACN CCGACGTGCTCCTCCTCTTCCGTACGGCAACCTGGAGCTCACAG CG CGCGCT CGGC GTCGA     GATGGACCTCTCCGACAAGCCCATGGGGCT CAGGCAGTCA GGTCTGCGTCC GCTACGCGCTCCTCGCCGACGACGGCGTCGTCA AGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCAAGGCGCTCTGAAGATGGAATCCGAGCTCTCGTAGGTGGCAACAATGGCAGGATCAGCCCGTTGCTCTCGCGCGTTGGTGAGTAGCGTCGTCGTTGTGAGGAGGAAATTTTGTGTGTGTTTTTTTTCGGTTGAATGTTGCATGCCATGTGCTTGACGAAATGACGGAATAAC AAAGAAACAAAACTACTTTT TTTTTTGTTTGAAAAAAAA                                                      ]
[+] EMBL BQ908123             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCGCCTGCGTGTCGGTGAACNGACGC GTTCGTGATGCGCGCGTGGAAGGAGAGCCTGGGCCTCGGCGACGNCCGACGTGCTCCTCCTC TCCG ACGGCAACCTGGAGCTCAC G CG CGCGCT CGGC GTCGA     GATGGACCTCTCCGACAAGCCCATGGGGCT C GGC GTCA GGTC GCG CC GCTACGCGCTCCTCGCCGACGACGGCGTCGTCA AGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCAAGGCGCTCTGAAGATGGAATCCGAGCTCTCGTAGGTGGCAACAATGGCAGGATCAGCCCGTTGCTCTCGCGCGTTGGTGAGTAGCGTCGTCGTTGTGAGGAGGAAATTTTGTGTGTGTTTTTTTTCGGTTGAATGTTGCATGCCATGTGCTTGACGAAATGACGGAATAACCAAAGAAAAAAAACTACTTTT TTTTTTTGTTGAAAAAAAAAA                                                    ]
[+] EMBL BI805097             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGTCGGTG AC GACGC GTTCGTGATGCGCGCGTGGAAGGAGAGCCT GGCCTCGGCGACG CCGACGTGCTCCTCCTC TCCG ACGGCAACCTGGAGCTCAC G CG CGCGCT CGGC GTCGA     GATGGACCTCTCCGACCAGCCCCTGGGGCT C GGC GTCACGGTC GCC CC GCTACGCGCTCCTCGCCGACGACGGCGTCGTCA AGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCAAGGCGCTCTGAAGATGGAATCCGAGCTCTCGTAGGTGGCAACCATGGCAGGATCAGCCCGTTGCTCTCGCGCGTTGGTGAGTAGCGTCGTCGTTGTGAAGAGGAAATTTTGTGTGTGTTTTTTTTCGGTTGAATGTTGCATGCCATGTGCTTGACGAAATGACGGAATAACCAAAGAAAAAAAACTACTTTTATTTTTTTGTTGAAAAAAAAAc                                                    ]
[+] EMBL AU075540             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gaagntTCAC GTCGACGCGCTNCGGC GTCGA     GATGGACCTCTCCGACAAGCCCATGGGGCTNC GGC GTCA GGTC G    C GCTACGCGCTCCTCGCCGANGACGGCGTCGTCA AGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCAAGGCGCTCTGAAGATGGAATCCGAGCTCTCGTAGGTGGCAACAATGGCAGGATCAGCCCGTTGCTCTCGCGCGTTGGTGAGTAGCGTCGTCGTTGTGAAGAGGAAATTTTGTGTGTGTTTTTTTTCGGTTGAATGTTGCATGCCATGTGCTTGACGAAATGACGGAATAACAAAAGAAAAAAAACTACTTTTAaa                                                                       ]
[+] EMBL AU070372             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tGTCANAGGTGCTCAACCTCGAGGAGGGCGGCG CTTCACCACCAGCAGCGCCGAGGAGATGCTCAAGGCGCTCTGAAGATGGAATCCGAGCTCTCGTAGGTGGCAACAATGGCAGGATCAGCCCGTTGCTCTCGCGCGTTGGTGAGTAGCGTCGTCGTTGTGAAGAGGAAATTTTGTGTGTGTTTTTTTTCGGTTGAATGTTGCATGCCATGTGCTTNACGAAATGACGGAATAACAAAAGAAAAAAAACTACTTTNATTTTTTTGTTGAAAAAAAAAAAaaaaa                                              ]


>consensus_12933#0 AACAGAGAAGCATTTCCTCGAACACATCGCCGTCGCCGCCCTCCATGGCCGCTCCCACCG CAGCAGCTCTCTCCACCCTCTCCACCGCCAGCGTCACCTCCGGCAAGCGCTTCATCACCT CCTCCTTCTCCCTCTCCTTCTCCTCCCGCCCCCTCGCAACAGGCGTCCGCGCCGCGGGGG CGAGAGCGGCGCGGAGGTCGGCGGCGTCGGCGTCCACCGTGGTGGCGACCATCGCCGTCG GAGACAAGCTCCCCGACGCGACGCTGTCCTACTTCGACCCGGCGGACGGCGAGCTGAAGA CGGTGACGGTGGCGGAGCTGACGGCGGGCAGGAAGGCGGTGCTGTTCGCGGTGCCCGGCG CGTTCACGCCGACGTGCTCGCAGAAGCACCTCCCGGGGTTCATCGAGAAGGCCGGGGAGC TCCACGCCAAGGGGGTGGACGCCATCGCCTGCGTGTCGGTGAACGACGCGTTCGTGATGC GCGCGTGGAAGGAGAGCCTGGGCCTCGGCGACGCCGACGTGCTCCTCCTCTCCGACGGCA ACCTGGAGCTCACGCGCGCGCTCGGCGTCGAGATGGACCTCTCCGACAAGCCCATGGGGC TCGGCGTCAGGTCGCGCCGCTACGCGCTCCTCGCCGACGACGGCGTCGTCAAGGTGCTCA ACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCAAGGCGCTCT GAAGATGGAATCCGAGCTCTCGTAGGTGGCAACAATGGCAGGATCAGCCCGTTGCTCTCG CGCGTTGGTGAGTAGCGTCGTCGTTGTGAAGAGGAAATTTTGTGTGTGTTTTTTTTCGGT TGAATGTTGCATGCCATGTGCTTGACGAAATGACGGAATAACAAAAGAAAAAAAACTACT TTTATTTTTTTGTTGAAAAAAAAAAACCATGTGTTTGACGAAATGTCGAGATATGAAAGC TGTGAAATCGCTTACGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)