These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 674 fasta sequence [ATGCATGCAAACCTTCTCAAGCTT-CAACGATCAGC-GTACGTACGTAGCACG-AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC-GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC-TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA--TTCCAAGCCAACGCGGCCTGGAGCGCCGGCGGAGGGCTCCGGCGGC-AACGGCGGA-GCAATCCAC-ACCGCTG-CTTCTTCCTGATCCATCGCATCGTCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACTATATTGGTGTAGCTTCCACGGCCTGGTGAATGTTGATATGTTTCTGTGCATTTTCTTTTACAAAAA] [+] EMBL AK111113 [ATGCATGCAAACCTTCTCAAGCTT CAACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA TTCCAAGCCAACGCGGCCTGGAGCGCCGGCGGAGGGCTCCGGCGGC AACGGCGGA GCAATCCAC ACCGCTG CTTCTTCCTGATCCATCGCATCGTCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACT ] [+] EMBL AU082956 [ GCTTCCAACGTTCAGCGGTACGTACGTAGC CGAAGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGGTCTCCATCGCCGGAGATTATATCGACCAATGGCGATGTCGTCGTCTCCCGGCCTNNCCGCCGCCATCCTTCNTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA TTCCAAGCCAACGCGGCCTGGAGCGCCGGCGGAGGGCTCCGGCGGC AACGGCGGA GCAATCCAC ACCGCTG CTTCTTCCTGATCCATCGCATCGTCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACTATATTGGTGTAGCTTCCACGGCCTGGTGAATGTTGATATGTTTCTGTGCATTTTCTTTTACAAAAA] [+] EMBL AU064852 [ ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGNCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA TTNCAAGCCAACGCGGCCTGGAGCGC ] [+] EMBL AU064043 [ ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTNCNGCCGCCGATGAATTTCAAAGCCAA ] [+] EMBL AU064565 [ ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA TTCCAAGCCAACGCGGCCTNGAGCGCCGGCGGAGGGTTCCGGCGGCAAACGGCGGAGGAAATTCACAACCGTTGNTTTTTTCCTGA ] [+] EMBL AU064851 [ ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA TTCCAAGCCAACGCGGCCTNGAGCGCCGTCGGAGGGNTCCGGCGGC AACGGCGGA GAAATNCAC AACGTTG CTTCTT ] [+] EMBL AU094901 [ ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA TTCCAAGCCAACGCGGNCTGGAGCGCCGGCGGAGGGCTCCGGCGGC AACGGCGGA GCAATCCA ] [+] EMBL AU064997 [ ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGCTTGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA TTNCAAGCCAACGCGGCCTNGAGCGCCGGCGGAGGGTTCCGGCGGN AACGGCGGA GAAATt ] [+] EMBL AU064600 [ ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGNCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCNCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA TTCCAAGCCAACGCGGCCTGGAGCGCCGGCGGANGGCTCCGGCGGC A ] [+] EMBL AU094902 [ CGGCGGTGCCAAGGCCCAGTTCCTGCGCCACCGGGAGG AATGCTGCTTGTTCTTCCCTCCCNTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTNCGATCCTTGCCGCCGCCGATGA TTCCAAGCNAACGCGGCCTGGAGCGCCGGCGGAGGGCTCCGGCGGC AACGGCGGA GCAATCCAC ACCGCTG CTTCTTCCTGATCCATCGCATCGTCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACTATATTGGTGTAGCTTCCACGGCCTGGTGAATGTTGATATGTTTCTGTGCATTTTCTTTTACAAAAA] [+] EMBL AU094917 [ GTCAATGNCCGGAGTACGANCCTTGCCGCCGCCGATGA TTCCAANCCAACGCGGCCTGGAGCNCCGGCGGAGGGCTCCGGCGGC AACGGCGGA GCAATCCAC ACCGCTG CTTCTTCCTGATCCATCGCATCGTCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACTATATTGGTGTAGCTTCCACGGCCTGGTGAATGTTGATATGTTTCTGTGCATTTTCTTTTACAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||