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Oryza sativa
cluster # 12947 cluster # 12947       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12947#0 length = 1685 sequences # 7  
consensus_12947#1 length = 718 sequences # 1  
consensus_12947#2 length = 337 sequences # 1  
consensus_12947#3 length = 302 sequences # 2  

consensusID : consensus_12947#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1685
fasta sequence
                              [CGCCGTTGCCGTCGTCTTCGTTTCGCAGCTCCACCACCTCCATGGCGGCCGCCGCCTCCTCCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCGCGGCGGCCGTGTCCGCCCGCCGCGCCCCCAGCGCGAGTCCGGCCGCGGCGGCCTCCCTCCCCTCGCCGTCTCGCGCCTCCTGCGCTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCTCCGCAGCCGTGTCGTCGCGAGCGCGGCCCCCGCTATGCAGCCGCCGCCGGCGTCGAGGGTCTCCACGGTTGTCGACGTCGACCTCGGCGACCGGAGCTACCCGATCTACATCGGCGCAGGCCTTCTCGACGAGCCTGACCTGCTGCAGAGGCATGTTCATGGGAAGAGGGTTTTGGTGGTGACCAACACCACCGTCGCGCCGCTCTACCTGGAGAAGGTGACCTGGGCACTCACGCACAACAACCCGAATGTTTCTGTGGAGAGCGTGATCCTGCCCGACGGCGAGAAGTACAAGGACATGGGCACACTGATGAAGGTTTTCGACAAGGCAGTCGAGTCCCGGCTGGACCGGCGGTGCACGTTTGTTGCGTTGGGAGGTGGCGTTATTGGGGACATGTGCGGTTTTGCAGCTGCTGCGTTCCTGCGTGGTGTCAATTTCATACAGATTCCTACTACTCTGATGGCCCAGGTGGATTCATCTGTTGGAGGGAAGACCGGCATTAACCATCCATTGGGGAAGAACTTAATTGGGGCGTTCTACCAGCCACAGTGTGTACTGATAGACACCGAGACACTGAATACATTGCCTGACAGGGAACTGGCTTCAGGCATAGCTGAGGTGGTGAAGTATGGTCTCATAAGAGATGCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCTGAAGT-GGTTGCTCAGGACGAGAAGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTGCAGCTGGAACAGTTATGGCAGCTGACATGTCT-CACCGCCTGGGTTGGATAGACGAGTCAATCAAGAAACGGGCAATTGACATACTAGAGAAAGCGAAGCTTCCAATTACACCTCCAGAGGCCATGACAGTGGAGAAGTTCAAAAGTATTATGGCCGTTGATAAGAAGGTTGCTGATGGATTGCTGAGGCTCATCCTCCTGAAAGGACCTCTGGGAAGCTGTGTTTTCACTGGCGATTACGACAGGAATGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAATTCTT--GCACCAGA--TTTAATAAAG-CTGTTT-CTG--TTTTTAAGAAAAAAAAAAAAAAAAAAAAAGGGGGCGGGNCCGACCAA]

[+] EMBL AK071977             [CGCCGTTGCCGTCGTCTTCGTTTCGCAGCTCCACCACCTCCATGGCGGCCGCCGCCTCCTCCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCGCGGCGGCCGTGTCCGCCCGCCGCGCCCCCAGCGCGAGTCCGGCCGCGGCGGCCTCCCTCCCCTCGCCGTCTCGCGCCTCCTGCGCTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCTCCGCAGCCGTGTCGTCGCGAGCGCGGCCCCCGCTATGCAGCCGCCGCCGGCGTCGAGGGTCTCCACGGTTGTCGACGTCGACCTCGGCGACCGGAGCTACCCGATCTACATCGGCGCAGGCCTTCTCGACGAGCCTGACCTGCTGCAGAGGCATGTTCATGGGAAGAGGGTTTTGGTGGTGACCAACACCACCGTCGCGCCGCTCTACCTGGAGAAGGTGACCTGGGCACTCACGCACAACAACCCGAATGTTTCTGTGGAGAGCGTGATCCTGCCCGACGGCGAGAAGTACAAGGACATGGGCACACTGATGAAGGTTTTCGACAAGGCAGTCGAGTCCCGGCTGGACCGGCGGTGCACGTTTGTTGCGTTGGGAGGTGGCGTTATTGGGGACATGTGCGGTTTTGCAGCTGCTGCGTTCCTGCGTGGTGTCAATTTCATACAGATTCCTACTACTCTGATGGCCCAGGTGGATTCATCTGTTGGAGGGAAGACCGGCATTAACCATCCATTGGGGAAGAACTTAATTGGGGCGTTCTACCAGCCACAGTGTGTACTGATAGACACCGAGACACTGAATACATTGCCTGACAGGGAACTGGCTTCAGGCATAGCTGAGGTGGTGAAGTATGGTCTCATAAGAGATGCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCTGAAGT GGTTGCTCAGGACGAGAAGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTGCAGCTGGAACAGTTATGGCAGCTGACATGTCT CACCGCCTGGGTTGGATAGACGAGTCAATCAAGAAACGGGCAATTGACATACTAGAGAAAGCGAAGCTTCCAATTACACCTCAAGAGGCCATGACAGTGGAGAAGTTCAAAAGTATTATGGCCGTTGATAAGAAGGTTGCTGATGGATTGCTGAGGCTCATCCTCCTGAAAGGACCTCTGGGAAGCTGTGTTTTCACTGGCGATTACGACAGGAATGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGTAATAATGGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAATTCTT  GCACCAGA  TTTAATAAAG CTGT                                                       ]
[+] EMBL AK098959             [   CGTTGCCGTCGTCTTCGTTTCGCAGCTCCACCACCTCCATGGCGGCCGCCGCCTCCTCCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCGCGGCGGCCGTGTCCGCCCGCCGCGCCCCCAGCGCGAGCCCGGCCGCGGCGGCCTCCCTCCCCTCGCCGTCTCGCGCCTCCTGCGCTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCTCCGCAGCCGTGTCGTCGCGAGCGCGGCCCCCGCTATGCAGCCGCCGCCGGCGTCGAGGGTCTCCACGGTTGTCGACGTCGACCTCGGCGACCGGAGCTACCCGATCTACATCGGCGCAGGCCTTCTCGACGAGCCTGACCTGCTGCAGAGGCATGTTCATGGGAAGAGGGTTTTGGTGGTGACCAACACCACCGTCGCGCCGCTCTACCTGGAGAAGGTGACCTGGGCACTCACGCACAACAACCCGAATGTTTCTGTGGAGAGCGTGATCCTGCCCGACGGCGAGAAGTACAAGGACATGGGCACACTGATGAAGGTTTTCGACAAGGCAGTCGAGTTCCGGCTGGACCGGCGGTGCACGTTTGTTGCGTTGGGAGGTGGCGTTATTGGGGACATGTGCGGTTTTGCAGCTGCTGCGTTCCTGCGTGGTGTCAATTTCATACAGATTCCTACTACTCTGATGGCCCAGGTGGATTCATCTGTTGGAGGGAAGACCGGCATTAACCATCCATTGGGGAAGAACTTAATTGGGGCGTTCTACCAGCCACAGTGTGTACTGATAGACACCGAGACACTGAATACATTGCCTGACAGGGAACTGGCTTCAGGCATAGCTGAGGTGGTGAAGTATGGTCTCATAAGAGGTGCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCTGAAGT GGTTGCTCAGGACGAGAAGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTGCAGCTGGAACAGTTATGGCAGCTGACATGTCT CACCGCCTGGGTTGGATAGACGAGTCAATCAAGAAACGGGCAATTGACATACTAGAGAAAGCGAAGCTTCCAATTACACCTCCAGAGGCCATGACAGTGGAGAAGTTCAAAAGTATTATGGCCGTTGATAAGAAGGTTGCTGATGGATTGCTGAGGCTCATCCTCCTGAAAGGACCTCTGGGAAGCTGTGTTTTCACTGGCGATTACGACAGGAATGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAATTCTT  GCACCAGA  TTTAATAAAG CTGT                                                       ]
[+] EMBL AU162699             [                                                                                                                                                                                                                                                                                                     GACCTCGGCGACCGGAGCTACCCGATCTACATCGGCGCAGGCCTTCTCGACGAGCCTGACCTGCTGCAGAGGCATGTTCATGGGAAGAGGGTTTTGGTGGTGACCAACACCACCGTCGCGCCGCTCTACCTGGAGAAGGTGACCTGGGCACTCACGCACAACAACCCGAATGTTTCTGTGGAGAGCGTGATCCTGCCCGACGGCGAGAAGTACAAGGACATGGGCACACTGATGAAGGTTTTCGACAAGGCAGTCGAGTCCCGGCTGGACCGGCGGTGCACGTTTGTTGCGTTGGGAGGTGGCGTTATTGGGGACATGTGCGGTTTTGCAGCTGCTGCGTTCCTGCGTGGTGTCAATTTCATACAGATTCCTACTACTCTGATGGCCCAGGTGGATTCATCTGTTGGAGGGAAGACCGGCATTAACCATCCATTGGGGAAGAACTTAATTGGGGCGTTCTACCAGCCACAGTGTGTACTGATAGACACCGAGACACTGAATACATTGCCTGACAGGGAACTGGCTTCAGGCATAGCTGAGGTGGTGAAGTATGGTCTCATAAGAGATGCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCTGAAGTGGGTTGCTCAGGACGAGAAGGAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA754268             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAGTACAAGGACATGGGCACACTGATGAAGGTTTTCGACAAGGCAGTCGAGTCCCGGCTGGACCGGCGGTGCACGTTTGTTGCGTTGGGAGGTGGCGTTATTGGGGACATGTGCGGTTTTGCAGCTGCTGCGTTCCTGCGTGGTGTCAATTTCATACAGATTCCTACTACTCTGATGGCCCAGGTGGATTCATCTGTTGGAGGGAAGACCGGCATTAACCATCCATTGGGGAAGAACTTAATTGGGGCGTTCTACCAGCCACAGTGTGTACTGATAGACACCGAGACACTGAATACATTGCCTGACAGGGAACTGGCTTCAGGCATAGCTGAGGTGGTGAAGTATGGTCTCATAAGAGATGCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCTGAAGT GGTTGCTCAGGACGAGAAGGANAGTGGTCTCCGAGCAACACTTAATCTCGGNCATACATTTGGCCATGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCCTGGGGAGGCTGTTGCAGCTGGAACAGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU056551             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               nTGGTCCCCG GCAACACTTTATCNCGCCCATACATTNGCCCATGCTATAGAAACAGGAACTGGTTATGGAGCATGGCNCCATGGGGAGGCTNTTCCAGCTGGAACAGTTATGCCAGCTGACATGTCTCCACCGCCTGGGTTGGATAGACGAGTCAATCAAGAAACGGNCAATTGACATACTAGAGAAAGCGAAGCTTCCAATTACACCTCCAGAGGCCATGACAGTGGAGAAGTTCAAAAGTATTATGGCCGTTGATAAGAAGGTTGCTGATGGATTGCTGAGGCTCATCCTCCTGAAAGGNCCTCTGGGAAGCTGTGTTTTCACTGGCGATTACGACAGGAATGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAATTCTT  GCACCAGA  TTTAATAAAG CTGTTT CTG  TTTTTAAAAAAAAAAA                               ]
[+] EMBL AU066240             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAATTCTTTGGCACCAGATTTTTAATAAAGCCTGTTTCCTGTTTTTTTAAGGAAAAAAAAAAAAAAAAAAAAGGGGGCGGGNCCGACCAA]
[+] EMBL AU223406             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCCTCGACGAAACCCTCCGTGCATTNTGCGACTGCTGATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAATTCTT  GCACCAGA  TTTAATAAAG CTGTTT CTG  TTTTTAAGAAAAA                                  ]


>consensus_12947#0 CGCCGTTGCCGTCGTCTTCGTTTCGCAGCTCCACCACCTCCATGGCGGCCGCCGCCTCCT CCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCGCGGCGGCCGTGTCCGCCCGCCGCG CCCCCAGCGCGAGTCCGGCCGCGGCGGCCTCCCTCCCCTCGCCGTCTCGCGCCTCCTGCG CTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCTCCGCAGCCGTGTCGTCGCGAGCGCGG CCCCCGCTATGCAGCCGCCGCCGGCGTCGAGGGTCTCCACGGTTGTCGACGTCGACCTCG GCGACCGGAGCTACCCGATCTACATCGGCGCAGGCCTTCTCGACGAGCCTGACCTGCTGC AGAGGCATGTTCATGGGAAGAGGGTTTTGGTGGTGACCAACACCACCGTCGCGCCGCTCT ACCTGGAGAAGGTGACCTGGGCACTCACGCACAACAACCCGAATGTTTCTGTGGAGAGCG TGATCCTGCCCGACGGCGAGAAGTACAAGGACATGGGCACACTGATGAAGGTTTTCGACA AGGCAGTCGAGTCCCGGCTGGACCGGCGGTGCACGTTTGTTGCGTTGGGAGGTGGCGTTA TTGGGGACATGTGCGGTTTTGCAGCTGCTGCGTTCCTGCGTGGTGTCAATTTCATACAGA TTCCTACTACTCTGATGGCCCAGGTGGATTCATCTGTTGGAGGGAAGACCGGCATTAACC ATCCATTGGGGAAGAACTTAATTGGGGCGTTCTACCAGCCACAGTGTGTACTGATAGACA CCGAGACACTGAATACATTGCCTGACAGGGAACTGGCTTCAGGCATAGCTGAGGTGGTGA AGTATGGTCTCATAAGAGATGCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCAT TATTAGCAAGAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAG CTGAAGTGGTTGCTCAGGACGAGAAGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCC ATACATTTGGCCATGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGG CTGTTGCAGCTGGAACAGTTATGGCAGCTGACATGTCTCACCGCCTGGGTTGGATAGACG AGTCAATCAAGAAACGGGCAATTGACATACTAGAGAAAGCGAAGCTTCCAATTACACCTC CAGAGGCCATGACAGTGGAGAAGTTCAAAAGTATTATGGCCGTTGATAAGAAGGTTGCTG ATGGATTGCTGAGGCTCATCCTCCTGAAAGGACCTCTGGGAAGCTGTGTTTTCACTGGCG ATTACGACAGGAATGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCC TACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTG CATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAATG TGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGT CCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAATTCTTGCACCAGAT TTAATAAAGCTGTTTCTGTTTTTAAGAAAAAAAAAAAAAAAAAAAAAGGGGGCGGGNCCG ACCAA



consensusID : consensus_12947#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 718
fasta sequence
                              [CGCCGTTGCCGTCGTCTTCGTTTCGCAGCTCCACCACCTCCATGGCGGCCGCCGCCTCCTCCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCGCGGCGGCCGTGTCCGCCCGCCGCGCCCCCAGCGCGAGTCCGGCCGCGGCGGCCTCCCTCCCCTCGCCGTCTCGCGCCTCCTGCGCTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCTCCGCAGCCGTGTCGTCGCGAGCGCGGCCCCCGCTATGCAGCCGCCGCCGGCGTCGAGGGTCTCCACGGTTGTCGACGTCGACCTCGGCGACCGGAGCTACCCGATCTACATCAGCGCAGGCCTTCTCGACGAGCCTGACCTGCTGCAGACGCATGTGCATGGGATGAGGGTACTGGAGGGTGCGAAAACGACGAGGCGCGGTCGTGCTGAAGAGGCGATAATGCAGTACGGACGAGCTCACGAGCGTGATGCGATGTACAGTCACTGGCAACGATGAGGATCCTAGACAGTGAACACTGTGCACGGTCTGACTTGGTCGCGCGTCGGAGAAACTGAAGTGAGTCTATGAGATGGGAATACGATCCGGCGTCTTCCTCGGGTGGTGTCGAGAATATGTTTTATCGTACAGTGTGAGGGAGCATACTTAGGGTTGGGGCGCGGGTGTTAGTCGTAGATATCGGTCGGTGAGTCCTGGTATATAGGCTCAAGAGAGGTACAAGTAGG]

[+] EMBL AW155268             [CGCCGTTGCCGTCGTCTTCGTTTCGCAGCTCCACCACCTCCATGGCGGCCGCCGCCTCCTCCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCGCGGCGGCCGTGTCCGCCCGCCGCGCCCCCAGCGCGAGTCCGGCCGCGGCGGCCTCCCTCCCCTCGCCGTCTCGCGCCTCCTGCGCTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCTCCGCAGCCGTGTCGTCGCGAGCGCGGCCCCCGCTATGCAGCCGCCGCCGGCGTCGAGGGTCTCCACGGTTGTCGACGTCGACCTCGGCGACCGGAGCTACCCGATCTACATCAGCGCAGGCCTTCTCGACGAGCCTGACCTGCTGCAGACGCATGTGCATGGGATGAGGGTACTGGAGGGTGCGAAAACGACGAGGCGCGGTCGTGCTGAAGAGGCGATAATGCAGTACGGACGAGCTCACGAGCGTGATGCGATGTACAGTCACTGGCAACGATGAGGATCCTAGACAGTGAACACTGTGCACGGTCTGACTTGGTCGCGCGTCGGAGAAACTGAAGTGAGTCTATGAGATGGGAATACGATCCGGCGTCTTCCTCGGGTGGTGTCGAGAATATGTTTTATCGTACAGTGTGAGGGAGCATACTTAGGGTTGGGGCGCGGGTGTTAGTCGTAGATATCGGTCGGTGAGTCCTGGTATATAGGCTCAAGAGAGGTACAAGTAGG]


>consensus_12947#1 CGCCGTTGCCGTCGTCTTCGTTTCGCAGCTCCACCACCTCCATGGCGGCCGCCGCCTCCT CCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCGCGGCGGCCGTGTCCGCCCGCCGCG CCCCCAGCGCGAGTCCGGCCGCGGCGGCCTCCCTCCCCTCGCCGTCTCGCGCCTCCTGCG CTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCTCCGCAGCCGTGTCGTCGCGAGCGCGG CCCCCGCTATGCAGCCGCCGCCGGCGTCGAGGGTCTCCACGGTTGTCGACGTCGACCTCG GCGACCGGAGCTACCCGATCTACATCAGCGCAGGCCTTCTCGACGAGCCTGACCTGCTGC AGACGCATGTGCATGGGATGAGGGTACTGGAGGGTGCGAAAACGACGAGGCGCGGTCGTG CTGAAGAGGCGATAATGCAGTACGGACGAGCTCACGAGCGTGATGCGATGTACAGTCACT GGCAACGATGAGGATCCTAGACAGTGAACACTGTGCACGGTCTGACTTGGTCGCGCGTCG GAGAAACTGAAGTGAGTCTATGAGATGGGAATACGATCCGGCGTCTTCCTCGGGTGGTGT CGAGAATATGTTTTATCGTACAGTGTGAGGGAGCATACTTAGGGTTGGGGCGCGGGTGTT AGTCGTAGATATCGGTCGGTGAGTCCTGGTATATAGGCTCAAGAGAGGTACAAGTAGG



consensusID : consensus_12947#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence
                              [CTGGCGATTACGACAGGAATGCCCTCGACGAAACCCNCCGTGCATTCGCGACTGCTGAATCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCNACATTATCANTTCAGAGAGGAGACTGCANTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGANAAATAATGGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGNTCAATCNTGATACAGTTGTCCCCATTGACNAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAANTCTTGCACCAGATTTNATAAAGNTGTTGCAAGAATTGGCAACAGG]

[-] EMBL C71832               [CTGGCGATTACGACAGGAATGCCCTCGACGAAACCCNCCGTGCATTCGCGACTGCTGAATCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCNACATTATCANTTCAGAGAGGAGACTGCANTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGANAAATAATGGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGNTCAATCNTGATACAGTTGTCCCCATTGACNAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAANTCTTGCACCAGATTTNATAAAGNTGTTGCAAGAATTGGCAACAGG]


>consensus_12947#2 CTGGCGATTACGACAGGAATGCCCTCGACGAAACCCNCCGTGCATTCGCGACTGCTGAAT CTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCNACATTATCANTTCAGAGAGGA GACTGCANTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGANAAATAATGGA GAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGNTCAATCNTGATACA GTTGTCCCCATTGACNAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAANTCTTGCAC CAGATTTNATAAAGNTGTTGCAAGAATTGGCAACAGG



consensusID : consensus_12947#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 302
fasta sequence
                              [CGGCGTACGGNTGGGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAAAAAAAAAAAAAAAAAA]

[+] EMBL OS1321933            [CGGCGTACGGNTGGGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAATGTGGATAGGGGTTG                                                                                                             ]
[+] EMBL AU102067             [                       GAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAAAAAAAAAAAAAAAAAA]


>consensus_12947#3 CGGCGTACGGNTGGGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCC TACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACTG CATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAATG TGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGT CCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAAAAAAAAAAAAAAAA AA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      CGCCGTTGCCGTCGTCTTCGTTTCGCAGCTCCACCACCTCCATGGCGGCCGCCGCCTCCT 60
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      CCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCGCGGCGGCCGTGTCCGCCCGCCGCG 120
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      CCCCCAGCGCGAGTCCGGCCGCGGCGGCCTCCCTCCCCTCGCCGTCTCGCGCCTCCTGCG 180
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      CTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCTCCGCAGCCGTGTCGTCGCGAGCGCGG 240
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      CCCCCGCTATGCAGCCGCCGCCGGCGTCGAGGGTCTCCACGGTTGTCGACGTCGACCTCG 300
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      GCGACCGGAGCTACCCGATCTACATCGGCGCAGGCCTTCTCGACGAGCCTGACCTGCTGC 360
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      AGAGGCATGTTCATGGGAAGAGGGTTTTGGTGGTGACCAACACCACCGTCGCGCCGCTCT 420
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      ACCTGGAGAAGGTGACCTGGGCACTCACGCACAACAACCCGAATGTTTCTGTGGAGAGCG 480
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      TGATCCTGCCCGACGGCGAGAAGTACAAGGACATGGGCACACTGATGAAGGTTTTCGACA 540
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      AGGCAGTCGAGTCCCGGCTGGACCGGCGGTGCACGTTTGTTGCGTTGGGAGGTGGCGTTA 600
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      TTGGGGACATGTGCGGTTTTGCAGCTGCTGCGTTCCTGCGTGGTGTCAATTTCATACAGA 660
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      TTCCTACTACTCTGATGGCCCAGGTGGATTCATCTGTTGGAGGGAAGACCGGCATTAACC 720
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      ATCCATTGGGGAAGAACTTAATTGGGGCGTTCTACCAGCCACAGTGTGTACTGATAGACA 780
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      CCGAGACACTGAATACATTGCCTGACAGGGAACTGGCTTCAGGCATAGCTGAGGTGGTGA 840
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      AGTATGGTCTCATAAGAGATGCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCAT 900
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      TATTAGCAAGAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAG 960
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      CTGAAGTGGTTGCTCAGGACGAGAAGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCC 1020
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      ATACATTTGGCCATGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGG 1080
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      CTGTTGCAGCTGGAACAGTTATGGCAGCTGACATGTCTCACCGCCTGGGTTGGATAGACG 1140
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      AGTCAATCAAGAAACGGGCAATTGACATACTAGAGAAAGCGAAGCTTCCAATTACACCTC 1200
consensus_12947#1      ------------------------------------------------------------
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      CAGAGGCCATGACAGTGGAGAAGTTCAAAAGTATTATGGCCGTTGATAAGAAGGTTGCTG 1260
consensus_12947#1      ------------------------CGCCGTTGCCGTCGTCTTCGTTTCGCAGCTCCACCA 36
                                                                                   

consensus_12947#2      ------------------------------------------------------CTGGCG 6
consensus_12947#3      -------------------------------------------------------CGGCG 5
consensus_12947#0      ATGGATTGCTGAGGCTCATCCTCCTGAAAGGACCTCTGGGAAGCTGTGTTTTCACTGGCG 1320
consensus_12947#1      CCTCCATGGCGGCCGCCGCCTCCTCCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCG 96
                                                                                ***

consensus_12947#2      ATTACGACAG-GAATGCCCTCGACGAAACCCNCCGTGCATTC-GCGACTGCTGAATCTTC 64
consensus_12947#3      --TACGGNTG-G---GCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTC 59
consensus_12947#0      ATTACGACAG-GAATGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTC 1379
consensus_12947#1      -CGGCGGCCGTGTCCGCCCGCCGCGCC-CCCAGCGCGAGTCCGGCCGCGGCGGCCTCCCT 154
                           **   * *   **** *  **   ***  ** *  * * **  * ** *  **   

consensus_12947#2      CTACTTGGATCTTCAGACTGTATACTAAATAGGCNACATTATCANTTCAGAGAGGAGACT 124
consensus_12947#3      CTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACT 119
consensus_12947#0      CTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGAGGAGACT 1439
consensus_12947#1      CCCCTCGCCGTCTCGCGCCTCCTGCGCTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCT 214
                       *  ** *     **   *    * *        *  *          *** *****  **

consensus_12947#2      GCANTGT-ATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGANAAATAATGGAGAA 183
consensus_12947#3      GCATTGT-ATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAA 178
consensus_12947#0      GCATTGT-ATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATGGAGAA 1498
consensus_12947#1      CCGCAGCCGTGTCGTCGCGAGCGCGGCCCCCGCTATGCA-GCCGCCGCCGGCGTCGAGGG 273
                        *   *   * *    * ** *    ****   * *    * **         * ***  

consensus_12947#2      TGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGNTCAATCNTGAT-ACAGT 242
consensus_12947#3      TGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGAT-ACAGT 237
consensus_12947#0      TGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGAT-ACAGT 1557
consensus_12947#1      TCTCCACGGTTGTCGACGTC-GACCTCGGCGACCGGAG-CTACCCGATCTACATCAGCGC 331
                       * *  *  *  ** *   ** *      ***     ** **   * ***   ** *  * 

consensus_12947#2      TGTCCCCATTGACNAGAAGGGTTTACTGCATTTTCCT-TGCTGTTGCCAANTCTTGCACC 301
consensus_12947#3      TGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCT-TGCTGTTGCCAAA------AAA 290
consensus_12947#0      TGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCT-TGCTGTTGCCAATTCTTGCACC 1616
consensus_12947#1      AGGCCTTCTCGACGAGCCTGACCTGCTGCAGACGCATGTGCATGGGATGAGGGTACTGGA 391
                        * **   * *** **   *   * *****    * * ***    *   *          

consensus_12947#2      AGATTTNATAAAGNTGTTGCAAGAATTGGCAACAGG------------------------ 337
consensus_12947#3      AAAAAAAAAAAA------------------------------------------------ 302
consensus_12947#0      AGATTTAATAAAGCTGTTTCTGTTTTTAAGAAAAAAAAAAAAAAAAAAAAAGGGGGCGGG 1676
consensus_12947#1      GGGTGCGAAAACGACGAGGCGCGGTCGTGCTGAAGAGGCGATAATGCAGTACGGACGAGC 451
                              * **                                                 

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      NCCGACCAA--------------------------------------------------- 1685
consensus_12947#1      TCACGAGCGTGATGCGATGTACAGTCACTGGCAACGATGAGGATCCTAGACAGTGAACAC 511
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      ------------------------------------------------------------
consensus_12947#1      TGTGCACGGTCTGACTTGGTCGCGCGTCGGAGAAACTGAAGTGAGTCTATGAGATGGGAA 571
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      ------------------------------------------------------------
consensus_12947#1      TACGATCCGGCGTCTTCCTCGGGTGGTGTCGAGAATATGTTTTATCGTACAGTGTGAGGG 631
                                                                                   

consensus_12947#2      ------------------------------------------------------------
consensus_12947#3      ------------------------------------------------------------
consensus_12947#0      ------------------------------------------------------------
consensus_12947#1      AGCATACTTAGGGTTGGGGCGCGGGTGTTAGTCGTAGATATCGGTCGGTGAGTCCTGGTA 691
                                                                                   

consensus_12947#2      ---------------------------
consensus_12947#3      ---------------------------
consensus_12947#0      ---------------------------
consensus_12947#1      TATAGGCTCAAGAGAGGTACAAGTAGG 718
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)