cluster # 12952

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Oryza sativa
cluster # 12952 cluster # 12952 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12952#0 length = 1458 sequences # 7
consensus_12952#1 length = 628 sequences # 2

consensus_12952#2 length = 265 sequences # 1
consensus_12952#3 length = 221 sequences # 1

consensusID : consensus_12952#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1458
fasta sequence

                              [GAACTCCGCCGGCGGCGTCGACCTCACCCCGGCCGCCGCGCGCGCACACAAGAAGCGGAAGCTCCCCGAGAAGCAGCTCCCCGACCGCGTCGCCGCGCTGCTCCCGGAGTCGGCACTGTACACTCAGCTGCTCGAGTTCGAGTCCCGCGTCGACGCCGCGCTGCACCGCAAGAAGGTGGACATCCAGGAGGCGCTCAAGTCACCCCCCGCGCTGCAGCGCACGCTCCGCATCTACGTGTTCAACACCTTCGCCAACCAGGCGCCGCGCACCATNCCGTCGCCCAAGAACGCCGAGCCGNCCACCTGGTCGCTCAAGATCATCGGCCGCGTGCTCGAGGACGGCGCCGAGCTGGACCCCGCCAGCGTCGTGCCCAAGCACAACCCTGTGTACCCCAAGTTCTCGTCCTTCTTCAAGAGGGTGACGATTGCGCTCGACCCGTCGCTGTACCCGGAGAACCCGCTGATCATTTGGGAGAATGCGCGGTCGGCCGCCCCACAGGAAGGGTTCGAGGTGAAGAGGAAAGGGGATAAGGAGTTCTCCGCGAATATCCGGCTGGAGATGAACTATAACCCTGAGAAGTTCAAGCTCTCGCAGCCTCTGATGGAGGTGCTCGGGGTTGAGGTGGACACTCGTTCGAGGGTGATTGCTGCCCTCTGGCAGTACATCAAAGCGAAGAAGCTGCAGAATCCAACCGATCCTTCGTTCTTTATGTGTGATCCACAGTTGAAGAAGGTCTTTGGGGAGGATAAGCTGA-GGTTTGCGATGCT-ATCGCAGAAGATATCACAGCATCTCTCTCCTCCGCCGCCCATCAACTTGGAGCATAAGATTAAGCTCTCTGGGAATGGCGCGCATGCGAGTGCTTGCTATGATGTGATTGTGGATGTTCCTTTCCCTCTGCAGAAGGAGATGTCTGCATTTCTTGCCAACACTGAGAAG-CACAAGGACATTGAGGCATGTGATGAGGTGATATCTGCTTCGAT-CAAGAAGAT-CCATGAGCACCGCAGGAGGAGGGCATT-CTT-CCTTGGTTTCAGCCAGT-CCCCAGTGGAGTTCATCAATGCACTGATAGCGTCTCAGAGTAAAGATTTGAAGCTGATCGCAGGAGAAGCAAATAGGAATATTGAAAGAGAAAGACGTGCAGACTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAACCGCAAACCGGCTAGCGGTAATGAGGGCCCAGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTTGGTATTACTGTAGTGCCA-TTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTAAAAATTCAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCTCCATTGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATCCCTAACTACGGTGGCAAAAAAAAAAAAAA]

[+] EMBL AU108804             [GAACTCCGCCGGCGGCGTCGACCTCACCCCGGCCGCCGCGCGCGCACACAAGAAGCGGAAGCTCCCCGAGAAGCAGCTCCCCGACCGCGTCGCCGCGCTGCTCCCGGAGTCGGCACTGTACACTCAGCTGCTCGAGTTCGAGTCCCGCGTCGACGCCGCGCTGCACCGCAAGAAGGTGGACATCCAGGAGGCGCTCAAGTCACCCCCCGCGCTGCAGCGCACGCTCCGCATCTANGTGTTCAACACCTTCGCCAACCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSC797               [                    ACCTCACCCCGGCCGCCGCGCGCGCANACAAGAAGCGGAAGCTCCCCGAGAAGCAGCTCCCCGACCGCGTCGCCGCGCTGCTCCCGGAGTCGGCACTGTACACTCAGCTGCTCGAGTTCGAGTCCCGCGTCGACGCCGCGCTGCACCGCAAGAAGGTGGACATCCAGGAGGCGCTCAAGTCACCCCCCGCGCTGCAGCG ACGCTCCGNATCTACGTGTTCAACACCTTCGCCAACCAGGCGCCGCGCACCATNCCGTCGCCCAAGAACGCCGAGCCGNCCACCTGGTCGCTCAAGATCATCGGCCGCGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK108218             [                                                                                                                                                                                                                 CGCTGCAGCGCACGCTCCGCATCTACGTGTTCAACACCTTCGCCAACCAGGCGCCGCGCACCATCCCGCCGCCCAAGAACGCCGAGCCGCCCACCTGGTCGCTCAAGATCATCGGCCGCGTGCTCGAGGACGGCGCCGAGCTGGACCCCGCCAGCGTCGTGCCCAAGCACAACCCTGTGTACCCCAAGTTCTCGTCCTTCTTCAAGAGGGTGACGATTGCGCTCGACCCGTCGCTGTACCCGGAGAACCCGCTGATCATTTGGGAGAATGCGCGGTCGGCCGCCCCACAGGAAGGGTTCGAGGTGAAGAGGAAAGGGGATAAGGAGTTCTCCGCGAATATCCGGCTGGAGATGAACTATAACCCTGAGAAGTTCAAGCTCTCGCAGCCTCTGATGGAGGTGCTCGGGGTTGAGGTGGACACTCGTTCGAGGGTGATTGCTGCCCTCTGGCAGTACATCAAAGCGAAGAAGCTGCAGAATCCAACCGATCCTTCGTTCTTTATGTGTGATCCACAGTTGAAGAAGGTCTTTGGGGAGGATAAGCTGA GGTTTGCGATGCT ATCGCAGAAGATATCACAGCATCTCTCTCCTCCGCCGCCCATCAACTTGGAGCATAAGATTAAGCTCTCTGGGAATGGCGCGCATGCGAGTGCTTGCTATGATGTGATTGTGGATGTTCCTTTCCCTCTGCAGAAGGAGATGTCTGCATTTCTTGCCAACACTGAGAAG CACAAGGACATTGAGGCATGTGATGAGGTGATATCTGCTTCGAT CAAGAAGAT CCATGAGCACCGCAGGAGGAGGGCATT CTT CCTTGGTTTCAGCCAGT CCCCAGTGGAGTTCATCAATGCACTGATAGCGTCTCAGAGTAAAGATTTGAAGCTGATCGCAGGAGAAGCAAATAGGAATATTGAAAGAGAAAGACGTGCAGACTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAACCGCAAACCGGCTAGCGGTAATGAGGGCCCAGGCGGTGGTGCTGGTGGCTCATGAGGAAAGGGGTTGGTATTACTGTAGTGCCA TTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTAAAAATTCAGATA                                                                                                                                        ]
[+] EMBL C72606               [                                                                                                                                                                                                                                                                                                                                                                                               CTGTGTACCCCAAGTTCTCGTCCTTCTTCAAGAGGGTGACGATTGCGCTCGACCCGTCGCTGTACCCGGAGAACCCGCTGATCATTTGGGAGAATGCGCGGTCGGCCGCCCCACAGGAAGGGTTCGAGGTGAAGAGGAAAGGGGATAAGGAGTTCTCCGCGAATATCCGGCTGGAGATGAACTATAACCCTGAGAAGTTCAAGCTCTCGCAGCCTCTGATGGAGGTGCTCGGGGTTGAGGTGGACACTCGTTCGAGGGTGATTGCTGCCCTCTGGCAGTACATCAAAGCGAAGAAGCTGCAGAATCCAACCGATCCTTCGTTCTTTATGTGTGATCCACAGTTGAAGAANGTCTTTNGGGAGGATAAGCTGANGTTTTCCGATGCTAATCGCAGAAGATATCACAGCATCTCTCTCCTCCG CGGCCATCAANTTGGAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU062886             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AATGCNCGGTCGGCCGCCCCACAGGAAGGGTTCGAGGTGAAGAGGAAAGGGGATAAGNAGTTCTCCGCGAATATCCGGCTGGAGATGAACTATAACCCTGAGAAGTTCAAGCTCTCGCAGCCTCTNATGGAGGTNCTCGGGGTTAAGGTGGACACTCGTTCGAGGGTNATTNCTGCCCTCTGGCAGTACATCAAAGCGAAGAAGCTGCAGAATCCAACCGATCCTTCGTTCTTTATGTGTGATCCACAGTTGAAGAAGGTCTTTGGGGga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CA763604             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCCGCCGCCCATCAACTTGGAGCATAAGATTAAGCTCTCTGGGAATGGCGCGCATGCGAGTGCCTGCTATGATGTGATTGTGGATGTTCCTTTCCCTCTGCAGAAGGAGATGTTTGCATTTCTTGCCAACACTGAGAAG CACAAGGACATTGAGGCATGTGATGAGGTGATATCTGCTTCGAT CAAGAAGAT CCATGAGCACCGCAGGAGGAGGGCATT CTT CCTTGGTTTCAGCCAGT CCCCAGTGGAGTTCATCAATGCACTGATAGCGTCTTAGAGTAAAGATTTGAAGCTGATCGCAGGAGAAGCAAATAGGAATATTGAAAGAGAAAGACGTGCAGACTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAACCGCAAACCGGCTAGCGGTAATGAGGGCCCAGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTTGGTATTACTGTAGTGCCA TTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTAAAAATTCAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCTCCATTGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATCCCTAACTACGGTGGCAAAAAAAAAAAAAA]
[+] EMBL AU083385             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGCATAAGATTAAGCTCTCTGGGAATGGCGCGCATGCGAGTGCTTGCTATGATGTGATTGTGGATGTTCCTTTCCCTCTGCAGAAGGAGATGTCTGCATTTCTTGCCAACACTGAGAAGCCACAAGGACATTGAGGCATGTGATGAGGTGATATCTGCTTCGATCCAAGAAGATCCCATGAGCACCGCAGGAGGAGGGCATTCCTTCCCTTGGTTTCAGCCAGTCCCCCAGTGGAGTTCATCAATGCACTGATAGCGTCTCAGAGTAAAGATTTGAAGCTGATCGCAGGAGAAGCAAATAGGAATATTGAAAGAGAAAGACGTGCAGACTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAACCGCAAACCGGCTAGCGGTAATGAGGGCCCAGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTTGGTATTACTGTAGTGCCATTTTTGGTNTAGAANCAAGCTATCTGTTNTGTACTAGTTTNAAATCNGATATGTTNNCGATAAataaa                                                                                                                       ]




>consensus_12952#0
GAACTCCGCCGGCGGCGTCGACCTCACCCCGGCCGCCGCGCGCGCACACAAGAAGCGGAA
GCTCCCCGAGAAGCAGCTCCCCGACCGCGTCGCCGCGCTGCTCCCGGAGTCGGCACTGTA
CACTCAGCTGCTCGAGTTCGAGTCCCGCGTCGACGCCGCGCTGCACCGCAAGAAGGTGGA
CATCCAGGAGGCGCTCAAGTCACCCCCCGCGCTGCAGCGCACGCTCCGCATCTACGTGTT
CAACACCTTCGCCAACCAGGCGCCGCGCACCATNCCGTCGCCCAAGAACGCCGAGCCGNC
CACCTGGTCGCTCAAGATCATCGGCCGCGTGCTCGAGGACGGCGCCGAGCTGGACCCCGC
CAGCGTCGTGCCCAAGCACAACCCTGTGTACCCCAAGTTCTCGTCCTTCTTCAAGAGGGT
GACGATTGCGCTCGACCCGTCGCTGTACCCGGAGAACCCGCTGATCATTTGGGAGAATGC
GCGGTCGGCCGCCCCACAGGAAGGGTTCGAGGTGAAGAGGAAAGGGGATAAGGAGTTCTC
CGCGAATATCCGGCTGGAGATGAACTATAACCCTGAGAAGTTCAAGCTCTCGCAGCCTCT
GATGGAGGTGCTCGGGGTTGAGGTGGACACTCGTTCGAGGGTGATTGCTGCCCTCTGGCA
GTACATCAAAGCGAAGAAGCTGCAGAATCCAACCGATCCTTCGTTCTTTATGTGTGATCC
ACAGTTGAAGAAGGTCTTTGGGGAGGATAAGCTGAGGTTTGCGATGCTATCGCAGAAGAT
ATCACAGCATCTCTCTCCTCCGCCGCCCATCAACTTGGAGCATAAGATTAAGCTCTCTGG
GAATGGCGCGCATGCGAGTGCTTGCTATGATGTGATTGTGGATGTTCCTTTCCCTCTGCA
GAAGGAGATGTCTGCATTTCTTGCCAACACTGAGAAGCACAAGGACATTGAGGCATGTGA
TGAGGTGATATCTGCTTCGATCAAGAAGATCCATGAGCACCGCAGGAGGAGGGCATTCTT
CCTTGGTTTCAGCCAGTCCCCAGTGGAGTTCATCAATGCACTGATAGCGTCTCAGAGTAA
AGATTTGAAGCTGATCGCAGGAGAAGCAAATAGGAATATTGAAAGAGAAAGACGTGCAGA
CTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAACCGCAAACCGGC
TAGCGGTAATGAGGGCCCAGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTTGGTATT
ACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTAAAAATTCAGA
TATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCTCCAT
TGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATCCCTAACTACGG
TGGCAAAAAAAAAAAAAA

consensusID : consensus_12952#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence

                              [AGGACGAGACAAGGGGGAAGCTGATCGCCGGAGAAGCAAATAGGAATATTGAAAGAGAAAGACGTGCAGACTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAACCGCAAACCGGCTAGCGGTAATGAGGGCCCCGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTAGGTATTACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTAAAAATTCAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCTCCATTGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATCCCTAACTACGGTGGCAGTTTGAATTGTCATGCTAATTGCTAAATGCTGAAGGGAAAATGCTCTGTTCTAGTTACCTAACATATAGGTATTATATGTGGGCACAAGTTTTCTCTGTATGATGCTGTGTGTGGCTTATCATTTGTCCCACTGGGGAGGTTGTGGAGGGGGACTTGAGACTTCGAGAAAGCTGTATCTTTTGTATTTGAACATGCTTATTGGAGGGAAAAGGAAATGGAAAGAGTCCCTATCTTTAAAAAAAAAAAAAAAAA]

[-] EMBL CA763603             [AGGACGAGACAAGGGGGAAGCTGATCGCCGGAGAAGCAAATAGGAATATTGAAAGAGAAAGACGTGCAGACTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAACCGCAAACCGGCTAGCGGTAATGAGGGCCCCGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTAGGTATTACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTAAAAATTCAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCTCCATTGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATCCCTAACTACGGTGGCAGTTTGAATTGTCATGCTAATTGCTAAATGCTGAAGGGAAAATGCTCTGTTCTAGTTACCTAACATATAGGTATTATATGTGGGCACAAGTTTTCTCTGTATGATGCTGTGTGTGGCTTATCATTTGTCCCACTGGGGAGGTTGTGGAGGGGGACTTGAGACTTCGAGAAAGCTGTATCTTTTGTATTTGAACATGCTTATTGGAGGGAAAAGGAAATGGAAAGAGTCCCTATCTTTAAAAAAAAAAAAAAAAA]
[+] EMBL AU108803             [                                                                                                                                                               CTGGTGGTTCATGAGGAAAGGGGTTGGTATTACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTAAAAATTCAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCTCCATTGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATCCCTAACTACGGTGGCAGTATGAATTGTCATGCTAATTGCTAAATGCTGAAGGG                                                                                                                                                                                                                        ]




>consensus_12952#1
AGGACGAGACAAGGGGGAAGCTGATCGCCGGAGAAGCAAATAGGAATATTGAAAGAGAAA
GACGTGCAGACTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAACC
GCAAACCGGCTAGCGGTAATGAGGGCCCCGGCGGTGGTGCTGGTGGTTCATGAGGAAAGG
GGTAGGTATTACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTA
AAAATTCAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGT
GTACCTCCATTGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATCC
CTAACTACGGTGGCAGTTTGAATTGTCATGCTAATTGCTAAATGCTGAAGGGAAAATGCT
CTGTTCTAGTTACCTAACATATAGGTATTATATGTGGGCACAAGTTTTCTCTGTATGATG
CTGTGTGTGGCTTATCATTTGTCCCACTGGGGAGGTTGTGGAGGGGGACTTGAGACTTCG
AGAAAGCTGTATCTTTTGTATTTGAACATGCTTATTGGAGGGAAAAGGAAATGGAAAGAG
TCCCTATCTTTAAAAAAAAAAAAAAAAA

consensusID : consensus_12952#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [GGNCCCAGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTTGGTATTACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTAAAAATTCAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCTCCATTGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATCCCTAACTACGGTGGCAGTATGAATTGTCATGCTAAAAAAAAAAAAAAA]

[+] EMBL AU163767             [GGNCCCAGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTTGGTATTACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTAAAAATTCAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCTCCATTGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATCCCTAACTACGGTGGCAGTATGAATTGTCATGCTAAAAAAAAAAAAAAA]




>consensus_12952#2
GGNCCCAGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTTGGTATTACTGTAGTGCCA
TTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGTAAAAATTCAGATATGTTAGCGAC
AACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCTCCATTGTCTGTCCAAA
CGAGTTATCTACTTGTATGATTATGTGATAAGTGATCCCTAACTACGGTGGCAGTATGAA
TTGTCATGCTAAAAAAAAAAAAAAA

consensusID : consensus_12952#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [NNGATNNTTNGTNNTTTATGTGTGATCCACAGTTGAAGAAGGTNTTTGGGGAGGATAANCTGAGGTTTGCGATGCTATCAGAAGATATCACAGCATTTTCTCGCGCCATCAACTTGGAGCATAAGATTAAGCTCTCTGGGAATGGNCGCATGAGCTGCTTGCTATGATGTGATTGTGGATGTTCCTTTCCCTCTGCAGAAGGAGATGTCTGCATTTCTTGC]

[+] EMBL D42330               [NNGATNNTTNGTNNTTTATGTGTGATCCACAGTTGAAGAAGGTNTTTGGGGAGGATAANCTGAGGTTTGCGATGCTATCAGAAGATATCACAGCATTTTCTCGCGCCATCAACTTGGAGCATAAGATTAAGCTCTCTGGGAATGGNCGCATGAGCTGCTTGCTATGATGTGATTGTGGATGTTCCTTTCCCTCTGCAGAAGGAGATGTCTGCATTTCTTGC]




>consensus_12952#3
NNGATNNTTNGTNNTTTATGTGTGATCCACAGTTGAAGAAGGTNTTTGGGGAGGATAANC
TGAGGTTTGCGATGCTATCAGAAGATATCACAGCATTTTCTCGCGCCATCAACTTGGAGC
ATAAGATTAAGCTCTCTGGGAATGGNCGCATGAGCTGCTTGCTATGATGTGATTGTGGAT
GTTCCTTTCCCTCTGCAGAAGGAGATGTCTGCATTTCTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12952#0      GAACTCCGCCGGCGGCGTCGACCTCACCCCGGCCGCCGCGCGCGCACACAAGAAGCGGAA 60
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      GCTCCCCGAGAAGCAGCTCCCCGACCGCGTCGCCGCGCTGCTCCCGGAGTCGGCACTGTA 120
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      CACTCAGCTGCTCGAGTTCGAGTCCCGCGTCGACGCCGCGCTGCACCGCAAGAAGGTGGA 180
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      CATCCAGGAGGCGCTCAAGTCACCCCCCGCGCTGCAGCGCACGCTCCGCATCTACGTGTT 240
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      CAACACCTTCGCCAACCAGGCGCCGCGCACCATNCCGTCGCCCAAGAACGCCGAGCCGNC 300
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      CACCTGGTCGCTCAAGATCATCGGCCGCGTGCTCGAGGACGGCGCCGAGCTGGACCCCGC 360
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      CAGCGTCGTGCCCAAGCACAACCCTGTGTACCCCAAGTTCTCGTCCTTCTTCAAGAGGGT 420
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      GACGATTGCGCTCGACCCGTCGCTGTACCCGGAGAACCCGCTGATCATTTGGGAGAATGC 480
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      GCGGTCGGCCGCCCCACAGGAAGGGTTCGAGGTGAAGAGGAAAGGGGATAAGGAGTTCTC 540
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      -----------------------------------------------------AGGACGA 7
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      CGCGAATATCCGGCTGGAGATGAACTATAACCCTGAGAAGTTCAAGCTCTCGCAGCCTCT 600
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      GACAAGGGGGAAGCTGATCGCCGGAGAAGCAAATAGGAATATTGAAAGAGAAAGACGTGC 67
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      GATGGAGGTGCTCGGGGTTGAGGTGGACACTCGTTCGAGGGTGATTGCTGCCCTCTGGCA 660
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      AGACTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAACCGCAAACC 127
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      GTACATCAAAGCGAAGAAGCTGCAGAATCCAACCGATCCTTCGTTCTTTATGTGTGATCC 720
consensus_12952#3      --------------------------------NNGATNNTTNGTNNTTTATGTGTGATCC 28
consensus_12952#1      GGCTAGCGGTAATGAGGGCCCCGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTAGGT 187
consensus_12952#2      ---------------GGNCCCAGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTTGGT 45
                                                         * *  **  *     * * *      

consensus_12952#0      ACAGTTGAAGAAGGTCTTTGGGGAGGA--TAAGCTGAGGTTTGCGATGCTATCGCAGA-- 776
consensus_12952#3      ACAGTTGAAGAAGGTNTTTGGGGAGGA--TAANCTGAGGTTTGCGATGCTATC--AGA-- 82
consensus_12952#1      ATTACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATCTGTTATG-TACTAGTAAAAATT 246
consensus_12952#2      ATTACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATCTGTTATG-TACTAGTAAAAATT 104
                       *    ** **      ***** *  **   ** **     **  * * ***    * *  

consensus_12952#0      -AGATATCACAGCATC------TCTCTCCTCCGCCGCCCATCAACTTGGAGCATAAGATT 829
consensus_12952#3      -AGATATCACAGCATT------T---TCTCGCGCC----ATCAACTTGGAGCATAAGATT 128
consensus_12952#1      CAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCT 306
consensus_12952#2      CAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACCT 164
                        ******   ***         *   *     **     ** * *****    *     *

consensus_12952#0      AAGCTCTCTGGGAATGGCGCGCATGCGAGTGCTTGCTATGATGTGATTGTGGATGTTCCT 889
consensus_12952#3      AAGCTCTCTGGGAATGGN-CGCATGAGC-TGCTTGCTATGATGTGATTGTGGATGTTCCT 186
consensus_12952#1      CCATTGTCTGTCCAAACGAGTTATCTACTTGTATG--ATTATGTGATAAGTGATCCCTAA 364
consensus_12952#2      CCATTGTCTGTCCAAACGAGTTATCTACTTGTATG--ATTATGTGATAAGTGATCCCTAA 222
                           * ****   *        **     **  **  ** *******    ***      

consensus_12952#0      TTCCCTCTGCAGAAGGAGATGTCTGCATTTCTTGCCAACACTGAGAAGCACAAGGACATT 949
consensus_12952#3      TTCCCTCTGCAGAAGGAGATGTCTGCATTTCTTGC------------------------- 221
consensus_12952#1      CTACGGTGGCAGTTTGAATTGTC-ATGCTAATTGCTAAATGCTGAAGGGAAAATGCTCTG 423
consensus_12952#2      CTACGGTGGCAGTATGAATTGTC-ATGCTAA-----AAA----AAAAAAAAAA------- 265
                        * *    ****   **  ****     *                               

consensus_12952#0      GAGGCATGTGATGAGGTGATATCTGCTTCGATCAAGAAGATCCATGAGCACCGCAGGAGG 1009
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      TTCTAGTTACCTAACATATAGGTATTATATGTGGGCACAAGTTTTCTCTGTATGATGCTG 483
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      AGGGCATTCTTCCTTGGTTTCAGCCAGTCCCCAGTGGAGTTCATCAATGCACTGATAGCG 1069
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      TGTGTGGCTTATCATTTGTCCCACTGGGGAGGTTGTGGAGGGGGACTTGAGACTTCGAGA 543
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      TCTCAGAGTAAAGATTTGAAGCTGATCGCAGGAGAAGCAAATAGGAATATTGAAAGAGAA 1129
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      AAGCTGTATCTTTTGTATTTGAACATGCTTATTGGAGGGAAAAGGAAATGGAAAGAGTCC 603
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      AGACGTGCAGACTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAAC 1189
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      CTATCTTTAAAAAAAAAAAAAAAAA----------------------------------- 628
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      CGCAAACCGGCTAGCGGTAATGAGGGCCCAGGCGGTGGTGCTGGTGGTTCATGAGGAAAG 1249
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      GGGTTGGTATTACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATCTGTTATGTACTAGT 1309
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      AAAAATTCAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGG 1369
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      TGTACCTCCATTGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATC 1429
consensus_12952#3      ------------------------------------------------------------
consensus_12952#1      ------------------------------------------------------------
consensus_12952#2      ------------------------------------------------------------
                                                                                   

consensus_12952#0      CCTAACTACGGTGGCAAAAAAAAAAAAAA 1458
consensus_12952#3      -----------------------------
consensus_12952#1      -----------------------------
consensus_12952#2      -----------------------------