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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2190 fasta sequence
[CTGAAGGAGTAGAAAACACAAACCGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCCGATCTCCCTCCCCGGAGCTTCGCAAGCCAAGTCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCTATTTTTCCCCTTTCCCCTTTCCCTCCACCTTAAGATAAGCCGCCACCACCACCTTCTCTTATTGCCGGAGCTGAGCTCTTGTCGCCACTGTTCCGGCCATCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTCGCTCGGGAACACCATCTCCTACCGGCGTTCTCACCTCCCGGCCACCGGAGAGCCGGTGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCGGCTGCCAAACAGAAGAAGAAAAAAAGAAGAACGAGAGGAAGAAGAAGAGGAAGGAGAAGGCATTGACAAGTAATAATAACTCCCTTTTTCTTTTATTTGTTTTTCAATCTTTAAGAGCTCATATCTCTTCAACCACAAATCCAATTCCAAGAATTCTTTGATCTAAATTCATCCAATTTCAAATCCTTTATTTTGATACCAAATTTCCTATTTTTAAAATTTTAATTAAAATTCTTTATTTAAAAACCTTTTCCTTATTTATTTATTTACTTTCTAATTCTAAATTATTTTAATTAACCTTTAAAAAATATATATTTTAAATTTATTTGATTTACTTTATATCCCTTTAATTTTAAATTTCTTGTTTGAAAAACCTTTTTAAAATTTAATTTTCCTTTAATTTCTTTAAAAGCCATTTCCTTTCAAAATTCAAATATCTTTTGACCTTTTGCTTTTGCCTCTCTTCATGCTCCAATTTTGTTATTTTCTTTTACCGTTTATCTGTAGTACTTTCCCTTATAGGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATACAGAAAATCTCATCAACATCACAGGAGCTGACGTGGATCCAGCCGACTACGCTGAAGCCTTTGAAAGTTTCAAGGCTCAAGGCAAGACACAATTAAAATTTTGACCACATGAAATAATCAACCCTCATGTTTACTTTATGCATAAGTTAATCATATGAATAACATTGTGGTGGCTTAAAATGATATTTAATACTTTTAAGCATTGTTATATGAGATTATGGAAAGGTATACTGAACATCATTTTATGTGGTTTATTATTCAAACATCTTTACAAACTTAGGAATCCGGTTAAAATGGGTATTTTTGAATGTTATATATAATGAAGTTTGTTGGTGTGGGGAGTTTGGAAAGTTTTGGGTGGTTTAACTGGATTATAATTACCCCCTTATACCATGGGAAATGACATAGTTGTGTCCATCCACATAACCAGGTAATTATTGGACTTAGCCTAGTACATTGTCCCACTATATGAAAGACTGTTGGGTGGCTCTATGAGCGGTTGGTGTGAACATGCGTAAGGAGTTAGGGGGCAGTGTTTCATAACAGTAGGTCCCGTGAAAGTGTGACGATATAGTAACCTTGCTTTAGGCCTGGCAAGAGTTCGACCACTATGATGAGCCAAGATTCTACTGTGCAGTAACTAGTAGTAAGTGGGACCTTCGAACGGCTCTGGTGTCCTCAGCCTTGCAAAGTATTTGAAAGAGCATCTATGCCCCTAGTGGGTTTTGGTTTATTGATGACAAATGATTAAGGGACTACTGCACTTATTAAGTGTCTAAGCAAGTGATTAGTCCGATGAAGAAGCTAGGAAATGGACTTATCGATGGATGAGAATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGACTACCTATGGCAAGACGGTGAAGCGCAAGCGACGCTCAGTTGCGATGGACCATACGGTGGTAAAGGGCAAGCAAGGGGGTTGGCGCCGACGAACCGAAACCGGTGGTGAAGGGCGAGTGAAGACTGTGTCGTGATGAACCGTGCGAGGCCATTTGAAGCCATGGATTATCCACATCAATCATTTGAGAAATGGAAGATGAAATGTCAAAGATCAAGAAGATGAGATCGTCCCGATGATCAAATGACCTTGACGTTGGTAACCCTCCAAGAGAAAAAACAATATGGTGTGAAGGTACTCCTATTGGTATAACTTTGCCTTTCAAATTTGAGTTTAGGAGGCCGTACTATTAAGAGAGATACCACATGCATA]
[+] EMBL CF330543 [CTGAAGGAGTAGAAAACACAAACCGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCCGATCTCCCTCCCCGGAGCTTCGCAAGCCAAGTCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCTATTTTTCCCCTTTCCCCTTTCCCTCCACCTTAAGATAAGCCGCCACCACCACCTTCTCTTATTGCCGGAGCTGAGCTCTTGTCGCCACTGTTCCGGCCATCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTCGCTCGGGAACACCATCTCCTACCGGCGTTCTCACCTCCCGGCCACCGGAGAGCCGGTGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCGGCTGCCAAACAGAAGAAGAAA ]
[+] EMBL AK110971 [ GAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCCGATCTCCCTCCCCGGAGCTTCGCAAGCCAAGTCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCTATTTTTCCCCTTTCCCCTTTCCCTCCACCTTAAGATAAGCCGCCACCACCACCTTCTCTTATTGCCGGAGCTGAGCTCTTGTCGCCACTGTTCCGGCCATCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTCGCTCGGGAACACCATCTCCCACCGGCGTTCTCACCTCCCGGCCACCGGAGAGCCGGTGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCGGCTGCCAAACAGAAGAAAAAAAAAAGAAGAACGAGAGGAAGAAGAAGAGGAAGGAGAAGGCATTGACAAGTAATAATAACTCCCTTTTTCTTTTATTTGTTTTTCAATCTTTAAGAGCTCATATCTCTTCAACCACAAATCCAATTCCAAGAATTCTTTGATCTAAATTCATCCAATTTCAAATCCTTTATTTTGATACCAAATTTCCTATTTTTAAAATTTTAATTAAAATTCTTTATTTAAAAACCTTTTCCTTATTTATTTATTTACTTTCTAATTCTAAATTATTTTAATTAACCTTTAAAAAATATATATTTTAAATTTATTTGATTTACTTTATATCCCTTTAATTTTAAATTTCTTGTTTGAAAAACCTTTTTAAAATTTAATTTTCCTTTAATTTCTTTAAAAGCCATTTCCTTTCAAAATTCAAATATCTTTTGACCTTTTGCTTTTGCCTCTCTTCATGCTCCAATTTTGTTATTTTCTTTTACCGTTTATCTGTAGTACTTTCCCTTATAGGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATACAGAAAATCTCATCAACATCACAGGAGCTGACGTGGATCCAGCCGACTACGCTGAAGCCTTTGAAAGTTTCAAGGCTCAAGGCAAGACACAATTAAAATTTTGACCACATGAAATAATCAACCCTCATGTTTACTTTATGCATAAGTTAATCATATGAATAACATTGTGGTGGCTTAAAATGATATTTAATACTTTTAAGCATTGTTATATGAGATTATGGAAAGGTATACTGAACATCATTTTATGTGGTTTATTATTCAAACATCTTTACAAACTTAGGAATCCGGTTAAAATGGGTATTTTTGAATGTTATATATAATGAAGTTTGTTGGTGTGGGGAGTTTGGAAAGTTTTGGGTGGTTTAACTGGATTATAATTACCCCCTTATACCATGGGAAATGACATAGTTGTGTCCATCCACATAACCAGGTAATTATTGGACTTAGCCTAGTACATTGTCCCACTATATGAAAGACTGTTGGGTGGCTCTATGAGCGGTTGGTGTGAACATGCGTAAGGAGTTAGGGGGCAGTGTTTCATAACAGTAGGTCCCGTGAAAGTGTGACGATATAGTAACCTTGCTTTAGGCCTGGCAAGAGTTCGACCACTATGATGAGCCAAGATTCTACTGTGCAGTAACTAGTAGTAAGTGGGACCTTCGAACGGCTCTGGTGTCCTCAGCCTTGCAAAGTATTTGAAAGAGCATCTATGCCCCTAGTGGGTTTTGGTTTATTGATGACAAATGATTAAGGGACTACTGCACTTATTAAGTGTCTAAGCAAGTGATTAGTCCGATGAAGAAGCTAGGAAATGGACTTATCGATGGATGAGAATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGACTACCTATGGCAAGACGGTGAAGCGCAAGCGACGCTCAGTTGCGATGGACCATACGGTGGTAAAGGGCAAGCAAGGGGGTTGGCGCCGACGAACCGAAACCGGTGGTGAAGGGCGAGTGAAGACTGTGTCGTGATGAACCGTGCGAGGCCATTTGAAGCCATGGATTATCCACATCAATCATTTGAGAAATGGAAGATGAAATGTCAAAGATCAAGAAGATGAGATCGTCCCGATGATCAAATGACCTTGACGTTGGTAACCCTCCAAGAGAAAAAACAATATGGTGTGAAGGTACTCCTATTGGTATAACTTTGCCTTTCAAATTTGAGTTTAGGAGGCCGTACTATTAAGAGAGATACCACATGCATA]
[-] EMBL CF330544 [ GAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCCGATCTCCCTCCCCGGAGCTTCGCAAGCCAAGTCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCTATTTTTCCCCTTTCCCCTTTCCCTCCACCTTAAGATAAGCCGCCACCACCACCTTATATTATTGCCGGAGCTGAGCTCTTGTCGCCACTGTTCCGGCCAAAAATATATCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTCGCTCGGGAACACCATCTCCTACCGGCGTTCTCACCTCCCGGCCACCGGAGAGCCGGTGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCGGCTGCCAAACAGAAGAAGAAAA ]
consensusID : consensus_12953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 749 fasta sequence
[CGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCAGATCTCCCTCACCGGAGTTTCGCAAGCCAAGCCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCCATTTTTCCCATTTCCCCTTTTCCTCCACCTTGAGATAAGCCGCCGCCACCACCACCTTCTCTTATCGCCGGAGCTGAGCTCTTGTCGCCGCTGTTCCGGCCACCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCGTTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCAGCTGCCAAACAGAAGAAAAAAAAAGAACGAGAGGAAGAACAGGAAGGAGAAGGCATTGACAAACAATACAGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCTTCGAAAGTTTCAAGGCACAAGAACCGTGTTATGAAGAAGTCCCAGAAGGTAGCGAGGCCTACTACAACGACGAGTTTTTCTAGGCTTAATCTATACTCAAGCTTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTGTATAATTAATCGAAAGCTGTTCTGTAAAAAAAAAAA]
[+] EMBL CF321501 [CGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCAGATCTCCCTCACCGGAGTTTCGCAAGCCAAGCCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCCATTTTTCCCATTTCCCCTTTTCCTCCACCTTGAGATAAGCCGCCGCCACCACCACCTTCTCTTATCGCCGGAGCTGAGCTCTTGTCGCCGCTGTTCCGGCCACCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCGTTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCAGCTGCCAAACAGAAGAAAAAAAAAGAACGAGAGGAAGAACAGGAAGGAGAAGGCATTGACAAACAATACAGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCTTCGAAAGTTTCAAGGCACAAGAACCGTGTTATGAAGAAGTCCCAGAAGGTAGCGAGGCCTACTACAACGACGAGTTTTTCTAGGCTTAATCTATACTCAAGCTTATGCC ]
[+] EMBL CF318844 [CGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCAGATCTCCCTCACCGGAGTTTCGCAAGCCAAGCCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCCATTTTTCCCATTTCCCCTTTTTCTCCACCTTGAGATAAGCCGCCGCCACCACCACCTTCTCTTATCGCCGGAGCTGAGCTCTTGTCGCCGCTGTTCCGGCCACCCCTCTCTCTCCCTCCGCCTTACACCACCCTGCCCGGGTGCGCGTTGCTCGGG ]
[-] EMBL CF321502 [ GGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCGTTTTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCAGCTGCCAAACAGAAGAAAAAAAAAGAACGAGAGGAAGAACAGGAAGGAGAAGGCATTGACAAACAATACAGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCTTCGAAAGTTTCAAGGCACAAGAACCGTGTTATGAAGAAGTCCCAGAAGGTAGCGAGGCCTACTACAACGACGAGTTTTTCTAGGCTTAATCTATACTCAAGCTTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTGTATAATTAATCGAAAGCTGTTCTGTAAAAAAAAAAA]
consensusID : consensus_12953#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 588 fasta sequence
[TTTTTTTACATAACAACTTTCGATTAATTATACAAATTTGATCATACAAACTAATTATACAACTGTTAATGGTTTTAAAGATCCAAACTATTACAACCTTATTTGAAAGTATAAAGAAAAACCCAAAGCTACTAAACTTCACAGGTATAAGCTTGAGTGGAGACTAAGCCTAGAAAAACTCGTCGTTGAAGTAGGCCTTGCTACCTTCTGGAACTTCTTCGTAAAACGGTTCTTCTATATGTTAGATTAAGCAAGAGTGAGTACTTATGTACCCAGCAAGACACTTATAAACATGATATGAATATTATTATGGAAGCTTAAATATCATCATCTTAAGCATAAGGTATTGAATTAAAGAGAAAGTAAGCACAACAACAAAATCTCATTATTTTCATTAATATTTTATGTTTAAAACTACTTATACGTCAGGAGTAGGAATCACCCTTATGACACAACTCCAGAACCGGGAGTACGGCACATTCGAATGATTTAATTCACCTCTGCGGAGACTGTCCAGCTTTACCCACACGATGAGAACAATTTGCAAGGCTGAAAACACCATAGCCGTTCGAGAGTCCCACTTACTAC]
[+] EMBL CF327629 [TTTTTTTACATAACAACTTTCGATTAATTATACAAATTTGATCATACAAACTAATTATACAACTGTTAATGGTTTTAAAGATCCAAACTATTACAACCTTATTTGAAAGTATAAAGAAAAACCCAAAGCTACTAAACTTCACAGGTATAAGCTTGAGTGGAGACTAAGCCTAGAAAAACTCGTCGTTGAAGTAGGCCTTGCTACCTTCTGGAACTTCTTCGTAAAACGGTTCTTCTATATGTTAGATTAAGCAAGAGTGAGTACTTATGTACCCAGCAAGACACTTATAAACATGATATGAATATTATTATGGAAGCTTAAATATCATCATCTTAAGCATAAGGTATTGAATTAAAGAGAAAGTAAGCACAACAACAAAATCTCATTATTTTCATTAATATTTTATGTTTAAAACTACTTATACGTCAGGAGTAGGAATCACCCTTATGACACAACTCCAGAACCGGGAGTACGGCACATTCGAATGATTTAATTCACCTCTGCGGAGACTGTCCAGCTTTACCCACACGATGAGAACAATTTGCAAGGCTGAAAACACCATAGCCGTTCGAGAGTCCCACTTACTAC]
[+] EMBL CF332235 [ TTTTTTACATAACAACTTTCGATTAATTATACAAATTTGATCATACAAACTAATTATACAACTGTTAATGGTTTTAAAGATCCAAACTATTACAACCTTATTTGAAAGTATAAAGAAAAACCCAAAGCTACTAAACTTCACAGGTGTAAGCTTGAGTGGAGACTAAGCCTAAAAAAACTCGTCGTTGAAGTAGGCCTTGCTACCTTCTGGAACTTCTTCGTAAAACGGTTCTTCTATATGTTAGATTAAGCAAGAGTGAGTACTTATGTACCCAGCAAGACACTTATAAACATGATATGAATATTATTATGGAAGCTTAAATATCATCATCTTAAGCATAAGGTATTGAATTAAAGAGAAAGTAAGCACAACAACAAAATCTCATTATTTTCATTAATATTTTATGTTTAAAACTACTTATACGTCAGGAGTAGGAATCACCCTTATGACACAACTCCAGAACCGGGAGTACGGCACATTCGAATGATTTAATTCACCTCTGCGG ]
consensusID : consensus_12953#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[AAGCTCTCTCTCTCTCTCCCTCTCTCCAATCCATCACCGCCGGCCGCCGTTCTAAGTTCCCCCACAACCGGCCGTCGGCTTTGTTTGTGCGCCGCCTCCAGCCGCCGTCGCCGTCGCGCGTCAGCCGCCGGAGCCGCCCCTTCCTTCCCCTCACCGCGCCCTCTCCCTCCTCTCTCTGTGCCTGTGAAGAAGAAGGGAGGAAACAAGAAGAAGAAAGGAGGGGAGAAGAAGAAGAAATAAAGGAAAAAGAAGAGGACTGACAAGCGGGCCCCACTGCACAACAATCCAGAAGATCCGGTTAACATCACAGGAGCTGACGTGGACACAGCCGACTACGCTAAAGCCCCTGAAGATTTCGAGGTGCAAGAAGAACCGTATTACGAAGAAGTTCCAGAAGGTAGCGAGGCCTACTTCAATGATGAGTTTTTCTAGGCTTAGTCTCCACTCAAGCTTATGTCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTAGATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGTATGAACAAATTTGTATAATTAATCAGAA]
[+] EMBL AK111135 [AAGCTCTCTCTCTCTCTCCCTCTCTCCAATCCATCACCGCCGGCCGCCGTTCTAAGTTCCCCCACAACCGGCCGTCGGCTTTGTTTGTGCGCCGCCTCCAGCCGCCGTCGCCGTCGCGCGTCAGCCGCCGGAGCCGCCCCTTCCTTCCCCTCACCGCGCCCTCTCCCTCCTCTCTCTGTGCCTGTGAAGAAGAAGGGAGGAAACAAGAAGAAGAAAGGAGGGGAGAAGAAGAAGAAATAAAGGAAAAAGAAGAGGACTGACAAGCGGGCCCCACTGCACAACAATCCAGAAGATCCGGTTAACATCACAGGAGCTGACGTGGACACAGCCGACTACGCTAAAGCCCCTGAAGATTTCGAGGTGCAAGAAGAACCGTATTACGAAGAAGTTCCAGAAGGTAGCGAGGCCTACTTCAATGATGAGTTTTTCTAGGCTTAGTCTCCACTCAAGCTTATGTCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTAGATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGTATGAACAAATTTGTATAATTAATCAGAA]
consensusID : consensus_12953#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[ACCCTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCGTTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCAGCTGCCAAACAGAAGAAAAAAAAAAGAACGAGAGGAAGAACAGGAAGGAGAAGGCATTGACAAGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATACAGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCTTCGAAAGTTTCAAGGCACAAGAAGAACCGTGTTATGAAGAAGTCCCAGAAGGTAGCGAGGCCTACTACAACGACGAGTTTTTTTAGGCTTAATCTATACTCAAGCTTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTGTATAATTAATCGAAAAAAAAAAAAAAAAGACACTGTCATGCCGTTCG]
[-] EMBL CF318505 [ACCCTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCGTTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCAGCTGCCAAACAGAAGAAAAAAAAAAGAACGAGAGGAAGAACAGGAAGGAGAAGGCATTGACAAGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATACAGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCTTCGAAAGTTTCAAGGCACAAGAAGAACCGTGTTATGAAGAAGTCCCAGAAGGTAGCGAGGCCTACTACAACGACGAGTTTTTTTAGGCTTAATCTATACTCAAGCTTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTGTATAATTAATCGAAAAAAAAAAAAAAAAGACACTGTCATGCCGTTCG]
consensusID : consensus_12953#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[CTGTCATGATTTTTACATTACTTAAAGTCCTTATTACTTCTGATCTGTAATGGCCCTCTGAAATCTTTATCCAACGATTCAATGTTAATGTTGTTTGTGCGACCTAATTATGAGTTTTACATTACTTCAAGTCCTTGTTATTTCTGATTTTTACATTACTTAAGTCATTATTTCAAAATTGTGCCACCTTACCATTTCATTTTTGTTTTATCAGAAGCGCATAGTAGATTGTACAGACACTTTTGATAATACTCTGCAGTAAACAATTTCATGTAACATAAGTGAAAGAGCATCTATGCCCCTAGTGGGTTTTGGTTTATTGATGACAAACGATTAAGGGACTAATGCACTTATTGAGTGTATAAGCAAGTGATTAGTCCGATGAAGAAGCTAGGAAATGGACTTATCGATGGATGGGAATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGA]
[+] EMBL CA998843 [CTGTCATGATTTTTACATTACTTAAAGTCCTTATTACTTCTGATCTGTAATGGCCCTCTGAAATCTTTATCCAACGATTCAATGTTAATGTTGTTTGTGCGACCTAATTATGAGTTTTACATTACTTCAAGTCCTTGTTATTTCTGATTTTTACATTACTTAAGTCATTATTTCAAAATTGTGCCACCTTACCATTTCATTTTTGTTTTATCAGAAGCGCATAGTAGATTGTACAGACACTTTTGATAATACTCTGCAGTAAACAATTTCATGTAACATAAGTGAAAGAGCATCTATGCCCCTAGTGGGTTTTGGTTTATTGATGACAAACGATTAAGGGACTAATGCACTTATTGAGTGTATAAGCAAGTGATTAGTCCGATGAAGAAGCTAGGAAATGGACTTATCGATGGATGGGAATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12953#0 CTGAAGGAGTAGAAAACACAAACCGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTC 60
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 CGGCCATTAGTGCCACCGGCCGATCTCCCTCCCCGGAGCTTCGCAAGCCAAGTCCTTGCG 120
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 CCACCAACTCCGCCTCGCCGAGGTGATTCTATTTTTCCCCTTTCCCCTTTCCCTCCACCT 180
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 TAAGATAAGCCGCCACCACCACCTTCTCTTATTGCCGGAGCTGAGCTCTTGTCGCCACTG 240
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 TTCCGGCCATCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTCGCTC 300
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 GGGAACACCATCTCCTACCGGCGTTCTCACCTCCCGGCCACCGGAGAGCCGGTGCCTTGC 360
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 TTGCCCTCCTCTCTGTTACCTCTCGGCTGCCAAACAGAAGAAGAAAAAAAGAAGAACGAG 420
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 AGGAAGAAGAAGAGGAAGGAGAAGGCATTGACAAGTAATAATAACTCCCTTTTTCTTTTA 480
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 TTTGTTTTTCAATCTTTAAGAGCTCATATCTCTTCAACCACAAATCCAATTCCAAGAATT 540
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 CTTTGATCTAAATTCATCCAATTTCAAATCCTTTATTTTGATACCAAATTTCCTATTTTT 600
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 AAAATTTTAATTAAAATTCTTTATTTAAAAACCTTTTCCTTATTTATTTATTTACTTTCT 660
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 AATTCTAAATTATTTTAATTAACCTTTAAAAAATATATATTTTAAATTTATTTGATTTAC 720
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 TTTATATCCCTTTAATTTTAAATTTCTTGTTTGAAAAACCTTTTTAAAATTTAATTTTCC 780
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 TTTAATTTCTTTAAAAGCCATTTCCTTTCAAAATTCAAATATCTTTTGACCTTTTGCTTT 840
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 TGCCTCTCTTCATGCTCCAATTTTGTTATTTTCTTTTACCGTTTATCTGTAGTACTTTCC 900
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 CTTATAGGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATACAGAAAATCTC 960
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 ATCAACATCACAGGAGCTGACGTGGATCCAGCCGACTACGCTGAAGCCTTTGAAAGTTTC 1020
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 AAGGCTCAAGGCAAGACACAATTAAAATTTTGACCACATGAAATAATCAACCCTCATGTT 1080
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 -------------------------------------------------------CGAGC 5
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 TACTTTATGCATAAGTTAATCATATGAATAACATTGTGGTGGCTTAAAATGATATTTAAT 1140
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 TCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCAGATCTCC 65
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 ACTTTTAAGCATTGTTATATGAGATTATGGAAAGGTATACTGAACATCATTTTATGTGGT 1200
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 CTCACCGGAGTTTCGCAAGCCAAGCCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATT 125
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 TTATTATTCAAACATCTTTACAAACTTAGGAATCCGGTTAAAATGGGTATTTTTGAATGT 1260
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 CCATTTTTCCCATTTCCCCTTTTCCTCCACCTTGAGATAAGCCGCCGCCACCACCACCTT 185
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 TATATATAATGAAGTTTGTTGGTGTGGGGAGTTTGGAAAGTTTTGGGTGGTTTAACTGGA 1320
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 CTCTTATCGCCGGAGCTGAGCTCTTGTCGCCGCTGTTCCGGCCACCCCTCTCTCTCCCTC 245
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 -----------AAGCTCTCTCTCTCTCTCCCTCTCTCCAATCCATCACCGCCGGCCGCCG 49
consensus_12953#2 -----------------------------------------------------TTTTTTT 7
consensus_12953#0 TTATAATTACCCCCTTATACCATGGGAAATGACATAGTTGTGTCCATCCACATAACCAGG 1380
consensus_12953#5 ----------------------------CTGTCATGATTTT-TACATT-ACTTAA---AG 27
consensus_12953#1 CGCCTTCCACCACC--CTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCG 303
consensus_12953#4 -----------ACC--CTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCG 47
consensus_12953#3 TTCTAAGTTCCCCC--ACAACCGGCCGTCGGCTTTGTTTGTGCGCCGCCTCCAGCCGCCG 107
consensus_12953#2 ACATAACAACTTTCGATTAATTATACAAATTTGATCATACAAACTAATTATACAAC--TG 65
*
consensus_12953#0 TAATTATTGGACTTAGCCTAGTACATTGTCCCACTATATGAAAGA--------CTGTTGG 1432
consensus_12953#5 TCCTTATTACTTCTGATCT---GTAATGGCCCTCTG---AAATCT--------TTATCCA 73
consensus_12953#1 TTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTC--------CTCTCTG 355
consensus_12953#4 TTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTC--------CTCTCTG 99
consensus_12953#3 TCGCCGTCGCGCGTCAGCCGCCGGAGCCGCCCCTTCCTTCCCCTCACCGCGCCCTCTCCC 167
consensus_12953#2 TTAATGGTTTTAAAGATCCAAACTATTACAACCTTATTTGAAAGT--------ATAAAGA 117
* * * * *
consensus_12953#0 GTGGCTCTATGAGCGGTTGGTGTGAACATGCGTAAGGAGTTAGGGGGCAGTGTTTCATAA 1492
consensus_12953#5 ACGATTCAATG-----TTAATGT---TGTTTGTGCG-ACCTAATTATGAGTTTTACATTA 124
consensus_12953#1 TTACCTCTCAG---CTGCCAAACAGAAGAAAAAAAA-A-GAACGAGAGGAAGAACAGGAA 410
consensus_12953#4 TTACCTCTCAG---CTGCCAAACAGAAGAAAAAAAA-AAGAACGAGAGGAAGAACAGGAA 155
consensus_12953#3 TCCTCTCTCTGTGCCTGTGAAGAAGAAGGGAGGAAACAAGAAGAAGAAAGGAGGGGAGAA 227
consensus_12953#2 AAAACCCAAAG--CTACTAAACTTCACAGGTATAAGCTTGAGTGGAGACTAAGCCTAGAA 175
* * *
consensus_12953#0 CAGTAGGTCCCGTGAAAGTGTGACGATATAGTAACCTTGCTTTAGGCCTGGCAAGAGTTC 1552
consensus_12953#5 CTTCAAGTCCTTGTTATTTCTGATTTTTACATTACTTAAGTCATTATTTCAAAATTGTGC 184
consensus_12953#1 GGAGAAGGCATTGACAA------------------------------------ACAATAC 434
consensus_12953#4 GGAGAAGGCATTGACAAGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATAC 215
consensus_12953#3 GAAGAAGAAATAAAGGAAAAAGAAGAGGACTGACAAGCGGGCCCCACTGCACAACAATCC 287
consensus_12953#2 AAACTCGTCGTTGAAGTAGGCCTTGCTACCTTCTGGAACTTCTTCGTAAAACGGTTCTTC 235
* * *
consensus_12953#0 GACCACTATGATGAGCCAAGATTCTACTGTGCAGTAACTAGTAGTAAGT---GGGACCT- 1608
consensus_12953#5 CACCTTACCATTTCATTTTTGTTTTATCA-GAAGCGCATAGTAGATTGTACAGACACTT- 242
consensus_12953#1 AGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCT- 493
consensus_12953#4 AGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCT- 274
consensus_12953#3 AGAAGATCCGGTTAACATCACAGGAGCTGACGTGGACACAGCCGACTACGCTAAAGCCC- 346
consensus_12953#2 TATATGTTAGATTAAGCAAGAGTGAGTACTTATGTACCCAGCAAGACACTTATAAACATG 295
* * ** *
consensus_12953#0 ---TCGA-ACGGCTCTGGTG---TCCTCAGCCT--TGCAAAGTATTTG----------AA 1649
consensus_12953#5 ---TTGATAATACTCTGCAG---TAAACAATTTCATGTAACATAAGTG----------AA 286
consensus_12953#1 ---TCGAAAGTTTCAAGGCA---CAAGAA---CCGTGTTATGAAGAAGTC------CCAG 538
consensus_12953#4 ---TCGAAAGTTTCAAGGCA---CAAGAAGAACCGTGTTATGAAGAAGTC------CCAG 322
consensus_12953#3 ---CTGAAGATTTCGAGGTG---CAAGAAGAACCGTATTACGAAGAAGTT------CCAG 394
consensus_12953#2 ATATGAATATTATTATGGAAGCTTAAATATCATCATCTTAAGCATAAGGTATTGAATTAA 355
* * * * * * * *
consensus_12953#0 AGAGCATCTATGC-CCCTAGTGGGTTTTGGTT-TATTGATGACAAATGATTAAGGGAC-T 1706
consensus_12953#5 AGAGCATCTATGC-CCCTAGTGGGTTTTGGTT-TATTGATGACAAACGATTAAGGGAC-T 343
consensus_12953#1 AAGGTAGCGAGGC-CTACTACAACGACGAGTT-TTTCTAGGCTTAATCTATACTCAAG-C 595
consensus_12953#4 AAGGTAGCGAGGC-CTACTACAACGACGAGTT-TTTTTAGGCTTAATCTATACTCAAG-C 379
consensus_12953#3 AAGGTAGCGAGGC-CTACTTCAATGATGAGTT-TTTCTAGGCTTAGTCTCCACTCAAG-C 451
consensus_12953#2 AGAGAAAGTAAGCACAACAACAAAATCTCATTATTTTCATTAATATTTTATGTTTAAAAC 415
* * * * ** * ** * * * * *
consensus_12953#0 ACTGCACTTATTAAGTGTCTAAGC---AAGTGATTAGTCCGATGAAGAAGCTAGGAAATG 1763
consensus_12953#5 AATGCACTTATTGAGTGTATAAGC---AAGTGATTAGTCCGATGAAGAAGCTAGGAAATG 400
consensus_12953#1 -TTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTA 654
consensus_12953#4 -TTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTA 438
consensus_12953#3 -TTATGTCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTA 510
consensus_12953#2 TACTTATACGTCAGGAGTAGGAATCA-CCCTTATGACACAACTCCAGAACCGGGAGTACG 474
* * * * * * ** *
consensus_12953#0 G-ACTTATCGATGGATGAGA--ATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGA 1820
consensus_12953#5 G-ACTTATCGATGGATGGGA--ATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGA 457
consensus_12953#1 A-TAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTG 713
consensus_12953#4 A-TAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTG 497
consensus_12953#3 A-TAGTTTAGATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGTATGAACAAATTTG 569
consensus_12953#2 GCACATTCGAATGATTTAATTCACCTCTGCGGAGACTGTCCAGCTTTACCCACACGATGA 534
* ** * * * * * * *
consensus_12953#0 CTACCTATGGCAAGACGGTGAAGCGCAAGCGACGCTCAGTTGCGATGGACCATACGGTGG 1880
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 TATAATTAATCGAAAGCTGTTCTGTAAAAAAAAAAA------------------------ 749
consensus_12953#4 TATAATTAATCGAAAAAAA----AAAAAAAAAGACACTGTCATGCCGTTCG--------- 544
consensus_12953#3 TATAATTAATCAGAA--------------------------------------------- 584
consensus_12953#2 GAACAATTTGCAAGGCTGA-AAACACCATAGCCGTTCGAGAGTCCCACTTACTAC----- 588
consensus_12953#0 TAAAGGGCAAGCAAGGGGGTTGGCGCCGACGAACCGAAACCGGTGGTGAAGGGCGAGTGA 1940
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 AGACTGTGTCGTGATGAACCGTGCGAGGCCATTTGAAGCCATGGATTATCCACATCAATC 2000
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 ATTTGAGAAATGGAAGATGAAATGTCAAAGATCAAGAAGATGAGATCGTCCCGATGATCA 2060
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 AATGACCTTGACGTTGGTAACCCTCCAAGAGAAAAAACAATATGGTGTGAAGGTACTCCT 2120
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 ATTGGTATAACTTTGCCTTTCAAATTTGAGTTTAGGAGGCCGTACTATTAAGAGAGATAC 2180
consensus_12953#5 ------------------------------------------------------------
consensus_12953#1 ------------------------------------------------------------
consensus_12953#4 ------------------------------------------------------------
consensus_12953#3 ------------------------------------------------------------
consensus_12953#2 ------------------------------------------------------------
consensus_12953#0 CACATGCATA 2190
consensus_12953#5 ----------
consensus_12953#1 ----------
consensus_12953#4 ----------
consensus_12953#3 ----------
consensus_12953#2 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||