These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1489 fasta sequence [CACTTCGCTCACCACATCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC-GGCGGCGGCGGC-GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC-GGGGCACCCAC-GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGGCGC-CTCCGGCTACCTCGACACCACCGCCTCCCTCTACGGGGCGATATCGCTGAGCCGGCAGCTGGGGTACTTCAAGGAGTACAAGACGAAGGTGGAGGCGGTGGCCGGCGGGAAGAAGGCGGCGGCGCTGACGTCGGAGTCCATCTACGTGGTCAGCGCCGGCACCAGCGACTTCGTGCAGAACTACTACGTCAACCCGATGCTGGGCGCCACCTACACCCCCGACCAGTTCTCCGACGTCCTCATGCAGCCCTTCACCACCTTCATCGAGGGGCTGTACGGACAGGGGGCGAGGCGGATCGGCGTGACGTCGCTGCCGCCGATGGGGTGCCTCCCGGCGTCGGTGACGCTGTTCGGCGGCGGAAGCGGCGGCGGGTGCGTGGAGCGGCTGAACAACGACTCGCGGACGTTCAACGCGAAGCTGGAGGCGGCCTCCGACAGCATCAGGAAGCAGCACTCGGACCTCAAGCTCGTCGTCTTCGACATCTACAACCCGCTCCTCGACCTCGTCACCAACCCCACTGCCGCCGGTTTCTTCGAGTCTCGGAGAGCGTGCTGCGGGACGGGGACGATCGAGACGTCGGTGCTGTGCAACCAGGGTGCGGTGGGGACGTGCGCCAACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCCCACGGACGCCGCCAACAAGGTGCTCGCCGACGCCCTCCTCCTCCA-GGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACGCATGCACAGCCAACAGCGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTGCTGCATGCTGCTGTTTCGGTTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAGTATGAATGAACTGCTTGCTTGGTGTAATATGTCATGTACATGCGCTTGGATTGTACTATCCCGCTAGCAATG] [+] EMBL AK099266 [CACTTCGCTCACCACATCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC GGCGGCGGCGGC GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC GGGGCACCCAC GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGGCGC CTCCGGCTACCTCGACACCACCGCCTCCCTCTACGGGGCGATATCGCTGAGCCGGCAGCTGGGGTACTTCAAGGAGTACAAGACGAAGGTGGAGGCGGTGGCCGGCGGGAAGAAGGCGGCGGCGCTGACGTCGGAGTCCATCTACGTGGTCAGCGCCGGCACCAGCGACTTCGTGCAGAACTACTACGTCAACCCGATGCTGGGCGCCACCTACACCCCCGACCAGTTCTCCGACGTCCTCATGCAGCCCTTCACCACCTTCATCGAGGGGCTGTACGGACAGGGGGCGAGGCGGATCGGCGTGACGTCGCTGCCGCCGATGGGGTGCCTCCCGGCGTCGGTGACGCTGTTCGGCGGCGGAAGCGGCGGCGGGTGCGTGGAGCGGCTGAACAACGACTCGCGGACGTTCAACGCGAAGCTGGAGGCGGCCTCCGACAGCATCAGGAAGCAGCACTCGGACCTCAAGCTCGTCGTCTTCGACATCTACAACCCGCTCCTCGACCTCGTCACCAACCCCACTGCCGCCGGTTTCTTCGAGTCTCGGAGAGCGTGCTGCGGGACGGGGACGATCGAGACGTCGGTGCTGTGCAACCAGGGTGCGGTGGGGACGTGCGCCAACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCCCACGGACGCCGCCAACAAGGTGCTCGCCGACGCCCTCCTCCTCCA GGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACGCATGCACAGCCAACAGCGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTGCTGCATGCTGCTGTTTCGGTTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAGTATGAATGAACTGCTTGCTTGGTGTAATATGTCATGTACATGCGCTTGGATTGTACTATCCCGCTAGCAATG] [+] EMBL AK060516 [ ACTTCGCTCACCACATCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC GGCGGCGGCGGC GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC GGGGCACCCAC GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGGCGC CTCCGGCTACCTCGACACCACCGCCTCCCTCTACGGGGCGATATCGCTGAGCCGGCAGCTGGGGTACTTCAAGGAGTACAAGACGAAGGTGGAGGCGGTGGCCGGCGGGAAGAAGGCGGCGGCGCTGACGTCGGAGCCCATCTACGTGGTCAGCGCCGGCACCAGCGACTTCGTGCAGAACTACTACGTCAACCCGATGCTGGGCGCCACCTACACCCCCGACCAGTTCTCCGACGTCCTCATGCAGCCCTTCACCACCTTCATCGAGGAGCTGTACGGACAGGGGGCGAGGCGGATCGGCGTGACGTCGCTGCCGCCGATGGGGTGCCTCCCGGCGTCGGTGACGCTGTTCGGCGGCGGAAGCGGCGGCGGGTGCGTGGAGCGGCTGAACAACGACTCGCGGACGTTCAACGCGAAGCTGGAGGCGGCCTCCGACAGCATCAGGAAGCAGCACTCGGACCTCAAGCTCGTCGTCTTCGACATCTACAACCCGCTCCTCGACCTCGTCACCAACCCCACTGCCGCCGGTTTCTTCGAGTCTCGGAGAGCGTGCTGCGGGACGGGGACGATCGAGACGTCGGTGCAGTGCAACCAGGGTGCGGTGGGGACGTGCGCCAACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCCCACGGACGCCGCCAACAAGGTGCTCGCCGACGCCCTCCTCCTCCA GGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACGCATGCACAGCCAACAGCGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTGCTGCATGCTGCTGTTTCGGTTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAGTATGAATGAACTGCTTGCTTGGTGTAATATGTCATGTACATGCGCTT ] [+] EMBL AU182855 [ ACATCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC GGCGGCGGCGGC GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC GGGGCACCCAC GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGGCGC ] [+] EMBL AU070033 [ TCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC GGCGGCGGCGGC GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC GGGGCACCCAC GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAA TTC ] [+] EMBL AU172872 [ ACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGCAGGCGGCGGCGGCAGGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGNTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC GGGGCACCCAC GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTNGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGGCGC CTCCGGCTACCTTGACACCACCGC ] [+] EMBL AU070004 [ CCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC GGCGGCGGCGGC GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCATGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGANTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGNCCTACNGNCGCGANTTCCCNGAGACGCACGGGGGNACCCACGGGGGNGGTTCTGCAACGGG ] [+] EMBL C74111 [ CACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGG GCNCTCCGGCTACCTCGACACCACCGCCTCCCTCTACGGGGCGATATCGCTGAGCCGGCAGCTGGGGTACTTCAAGGAGTACAAGACNAAGGTGGANGCGGTGGCCGGCGGGAAGAAGng ] [+] EMBL AU062693 [ TCCGACAACCGCTCCNTCTTCCACGGCGCCAACTTCGCCTCCGG GCNNTCCGGCTACCTCGACACCACCGCCTCCNTCTACGAGGCGATATCGCTGAGCCGGCAGCTGGGGTACTTCAAGGAGTACAAGACGAAGGTGGAGGCGGTGGCCGGCGGGAAGAAGGCGTNGGCGCTGACGTCGGAGTCCATCTACGTGGTCAGCGCNGGCACCANCAACTTCGTGCAGAACTACTACGTCAACCCGA ] [+] EMBL AU165985 [ AACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCCCACGGACGCCGCCAACAAGGTGCTCGCCNACGCCCTCCTCCTCCAGGGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACGCATGCACAGCCAACAGCGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTGCTGCATGCTGCTGTTTCGGTTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAGTATGAATGAACTGCTTGCTTGGTGTAAaaa ] consensusID : consensus_12960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 373 fasta sequence [TGCTTGCCGACGCCCTCCTCCTCCAGGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATNACGGACGGCA-TGCACAGCCAACAGCGGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGANCTTAATTAGTTTAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCNAGTANCCCCCGTACGTGCTGCATGCTGCTGTTTCGGGTTGCCCNGCTTGTTTAGTTTTGTTTTTCTCNCTATCGTGCAGTCATGTGCNCGGGCTTGGGCTTAGTTGTTTTNCTGTANGTATGAATNAACANGCAATGCTTGGTGTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU172873 [TGCTTGCCGACGCCCTCCTCCTCCAGGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATNACGGACGGCA TGCACAGCCAACAGCGGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGANCTTAATTAGTTTAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCNAGTANCCCCCGTACGTGCTGCATGCTGCTGTTTCGGGTTGCCCNGCTTGTTTAGTTTTGTTTTTCTCNCTATCGTGCAGTCATGTGCNCGGGCTTGGGCTTAGTTGTTTTNCTGTANGTATGAATNAACANGCAATGCTTGGTGTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU162244 [ GCATTGCACAGCCAACAGC GCTACNAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTNCTGCATGCTGCTGTTTC GGTTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTA GTATGAATGAAC TGC TTGCTTGGTGTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12960#0 CACTTCGCTCACCACATCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAG 60 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 CATTATTAGCATCATGACCGCGATGGCGGCGGCGGCGGCGGTGTTGGTGTCGTTGCTGCT 120 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 GGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGA 180 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 CTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCC 240 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 GCCCTACGGCCGCGACTTCCCGGAGACGCACGGGGCACCCACGGGGCGGTTCTGCAACGG 300 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 GAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTA 360 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 CCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTC 420 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 CGGCGCCTCCGGCTACCTCGACACCACCGCCTCCCTCTACGGGGCGATATCGCTGAGCCG 480 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 GCAGCTGGGGTACTTCAAGGAGTACAAGACGAAGGTGGAGGCGGTGGCCGGCGGGAAGAA 540 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 GGCGGCGGCGCTGACGTCGGAGTCCATCTACGTGGTCAGCGCCGGCACCAGCGACTTCGT 600 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 GCAGAACTACTACGTCAACCCGATGCTGGGCGCCACCTACACCCCCGACCAGTTCTCCGA 660 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 CGTCCTCATGCAGCCCTTCACCACCTTCATCGAGGGGCTGTACGGACAGGGGGCGAGGCG 720 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 GATCGGCGTGACGTCGCTGCCGCCGATGGGGTGCCTCCCGGCGTCGGTGACGCTGTTCGG 780 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 CGGCGGAAGCGGCGGCGGGTGCGTGGAGCGGCTGAACAACGACTCGCGGACGTTCAACGC 840 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 GAAGCTGGAGGCGGCCTCCGACAGCATCAGGAAGCAGCACTCGGACCTCAAGCTCGTCGT 900 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 CTTCGACATCTACAACCCGCTCCTCGACCTCGTCACCAACCCCACTGCCGCCGGTTTCTT 960 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 CGAGTCTCGGAGAGCGTGCTGCGGGACGGGGACGATCGAGACGTCGGTGCTGTGCAACCA 1020 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 GGGTGCGGTGGGGACGTGCGCCAACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCC 1080 consensus_12960#1 ------------------------------------------------------------ consensus_12960#0 CACGGACGCCGCCAACAAGGTGCTCGCCGACGCCCTCCTCCTCCAGGGCCTCCAGCTCAT 1140 consensus_12960#1 --------------------TGCTTGCCGACGCCCTCCTCCTCCAGGGCCTCCAGCTCAT 40 **** *********************************** consensus_12960#0 CTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACG-CATGCACAGCCAACAGCG-C 1198 consensus_12960#1 CTCCTGATCCATCCATCCGTTTCCTGAGAATNACGGACGGCATGCACAGCCAACAGCGGC 100 ******************************* ******* ****************** * consensus_12960#0 TACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTA 1258 consensus_12960#1 TACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGANCTTA 160 ******************************************************* **** consensus_12960#0 ATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTG 1318 consensus_12960#1 ATTAGTTTAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCNAGTANCCCCCGTACGTG 220 ******* ********************************** **** ** ********* consensus_12960#0 CTGCATGCTGCTGTTTCGG-TTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGC 1377 consensus_12960#1 CTGCATGCTGCTGTTTCGGGTTGCCCNGCTTGTTTAGTTTTGTTTTTCTCNCTATCGTGC 280 ******************* ****** *********************** ********* consensus_12960#0 AGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAG-TATGAATGAACTGCT--TG 1434 consensus_12960#1 AGTCATGTGCNCGGGCTTGGGCTTAGTTGTTTTNCTGTANGTATGAATNAACANGCAATG 340 ********** ********************** ***** ******* *** ** consensus_12960#0 CTTGGTGTAATATGTCATGTACATGCGCTTGGATTGTACTATCCCGCTAGCAATG 1489 consensus_12960#1 CTTGGTGTAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 373 ********** * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||