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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1613 fasta sequence
[CCGTTCGCTCTCCCTCCTCCTCCTCCTCGTCTCCGCCGATCGAAGGAAAACAAAAAGCTAGGGTTTAGCTGCCTCTCTCGCTCGCCATCGCTCGCGGCGACTCGCTGCTAGGGTTTTTGGGTCTCTCTCTCTCTCTCCACCGGCGATGGATGCGGCGGCGCTCGACGACTTGATCCGGCGGCTCCTGGACGCCCGCGGCGGCCGCACGGCGCGCCCCGCGCAGCTC-GCCGACGCGGAGATCCGCAAGCTCTGCGCCGCCGCCAAGGACGTCTTCCTCTCCCAGCCCAACCTCCTCGAGCTCGAGGCCCCCATCAAAATCTGCGGAGATATCCATGGCCAGTATTCTGATCTTCTTCGGTTATTTGAGTATGGGGGCTTCCCACCAGAGGCAAACTACTTGTTTCTAGGTGATTATGTTGACCGTGGGAAACAGAGTATAGAAACTATATGTCTTCTCCTTGCGTATAAGATTAAGTACCCAGAGAACTTCTTCCTCCTTAGGGGAAACCATGAGTGCGCATCTATCAACCGAATCTACGGATTCTTTGATGAATGCAAAAGGAGGTTTAATGTTCGTATTTGGAAGGTTTTTACTGATTGTTTCAACTGCCTCCCTGTGGCTGCACTTATTGATGACAAGATCCTATGCATGCATGGGGGTTTATCTCCTGACCTAAAGAACATGGACCAGATTCGCAACATTGCCCGCCCAGTTGATGTTCCAGACCAT-GGTCTCCTGTGTGATCTG-TTGTGGTCAGACCCAGATAAAGAAATCGAAGGTTGGGGTGAGAATGACAGGGGTGTATCATACACTTTTGGAGCTGATAAGGTCGCTGAGTTTCTCCAGACACATGATCTAGATCTGATCTGCAGGGCTCACCAGGTTGTGGAGGATGGCTATGAATTCTTTGCTAAGCGCCAGCTTGTAACCATATTCTCTGCACCCAACTATTGTGGCGAGTTTGACAATGCGGGGGCGATGATGAGCATTGATGATTCTCTTACATGCTCATTCCAG-AT-CCTTAAGCCTTCTGATAAGAAAGGA-AAAGCAGGAAC-CGGAAATATGTCAAAACCTGGAACTCCACCAAGGAAGATAAAAATTAATATTATTTAGGCAGATTCCCACTAATGTGAACTGAGAAATTGTGATGGAGTACTCCTCCAAACTTGTTATTGGAAGATTTTTGGTGCGCATGACACTGTTGAAAAATGTCGACCTGCGTACCTTTGTGTTTTCACTGTCTGATGCAAATCTGTCCTGCCGTTATTCCTGCTGAAAAGAAGATCATACTTCGGCTGTTCGGCAAAAACCATACTTGGAAGCCTTCTTTAACATGGATTACTTATTTCTTCTTGATCTGCTACATAAGTCAGAAACCAGAATATCTGTCAATGGGTAGGCATAGGGAAACTACTAGTCTCATGTAGATTTTGTTCAATGCTGTATGCCATTCACCTGTAAAGTGTGCCTTTGAAAGGGACTGACTGATTAGCTGAAGTCTTTTACTGATGCTGATTG-CATAGAATGGTAACTTTTTACCCAGCAGCTGATAGTTAAGTGTCTTTATCTATGTGATAGGTGCTTTGTCATTGCCATTTTAAACAAGCATTTT]
[+] EMBL AK064345 [CCGTTCGCTCTCCCTCCTCCTCCTCCTCGTCTCCGCCGATCGAAGGAAAACAAAAAGCTAGGGTTTAGCTGCCTCTCTCGCTCGCCATCGCTCGCGGCGACTCGCTGCTAGGGTTTTTGGGTCTCTCTCTCTCTCTCCACCGGCGATGGATGCGGCGGCGCTCGACGACTTGATCCGGCGGCTCCTGGACGCCCGCGGCGGCCGCACGGCGCGCCCCGCGCAGCTC GCCGACGCGGAGATCCGCAAGCTCTGCGCCGCCGCCAAGGACGTCTTCCTCTCCCAGCCCAACCTCCTCGAGCTCGAGGCCCCCATCAAAATCTGCGGAGATATCCATGGCCAGTATTCTGATCTTCTTCGGTTATTTGAGTATGGGGGCTTCCCACCAGAGGCAAACTACTTGTTTCTAGGTGATTATGTTGACCGTGGGAAACAGAGTATAGAAACTATATGTCTTCTCCTTGCGTATAAGATTAAGTACCCAGAGAACTTCTTCCTCCTTAGGGGAAACCATGAGTGCGCATCTATCAACCGAATCTACGGATTCTTTGATGAATGCAAAAGGAGGTTTAATGTTCGTATTTGGAAGGTTTTTACTGATTGTTTCAACTGCCTCCCTGTGGCTGCACTTATTGATGACAAGATCCTATGCATGCATGGGGGTTTATCTCCTGACCTAAAGAACATGGACCAGATTCGCAACATTGCCCGCCCAGTTGATGTTCCAGACCAT GGTCTCCTGTGTGATCTG TTGTGGTCAGACCCAGATAAAGAAATCGAAGGTTGGGGTGAGAATGACAGGGGTGTATCATACACTTTTGGAGCTGATAAGGTCGCTGAGTTTCTCCAGACACATGATCTAGATCTGATCTGCAGGGCTCACCAGGTTGTGGAGGATGGCTATGAATTCTTTGCTAAGCGCCAGCTTGTAACCATATTCTCTGCACCCAACTATTGTGGCGAGTTTGACAATGCGGGGGCGATGATGAGCATTGATGATTCTCTTACATGCTCATTCCAG AT CCTTAAGCCTTCTGATAAGAAAGGA AAAGCAGGAAC CGGAAATATGTCAAAACCTGGAACTCCACCAAGGAAGATAAAAATTAATATTATTTAGGCAGATTCCCACTAATGTGAACTGAGAAATTGTGATGGAGTACTCCTCCAAACTTGTTATTGGAAGATTTTTGGTGCGCATGACACTGTTGAAAAATGTCGACCTGCGTACCTTTGTGTTTTCACTGTCTGATGCAAATCTGTCCTGCCGTTATTCCTGCTGAAAAGAAGATCATACTTCGGCTGTTCGGCAAAAACCATACTTGGAAGCCTTCTTTAACATGGATTACTTATTTCTTCTTGATCTGCTACATAAGTCAGAAACCAGAATATCTGTCAATGGGTAGGCATAGGGAAACTACTAGTCTCATGTAGATTTTGTTCAATGCTGTATGCCATTCACCTGTAAAGTGTGCCTTTGAAAGGGACTGACTGATTAGCTGAAGTCTTTTACTGATGCTGATTG CATAGAATGGTAACTTTTTACCCAGCAGCTGATAGTTAAGTGTCTTTATCTATGTGATAGGTGCTTTGTCATTGCCATTTTAAACAAGCATTT ]
[+] EMBL AK102278 [CCGTTCGCTCTCCCTCCTCCTCCTCCTCGTCTCCGCCGATCGAAGGAAAACAAAAAGCTAGGGTTTAGCTGCCTCTCTCGCTCGCCATCGCTCGCGGCGACTCGCTGCTAGGGTTTTTGGGTCTCTCTCTCTCTCTCCACCGGCGATGGATGCGGCGGCGCTCGACGACTTGATCCGGCGGCTCCTGGACGCCCGCGGCGGCCGCACGGCGCGCCCCGCGCAGCTC GCCGACGCGGAGATCCGCAAGCTCTGCGCCGCCGCCAAGGACGTCTTCCTCTCCCAGCCCAACCTCCTCGAGCTCGAGGCCCCCATCAAAATCTGCGGAGATATCCATGGCCAGTATTCTGATCTTCTTCGGTTATTTGAGTATGGGGGCTTCCCACCAGAGGCAAACTACTTGTTTCTAGGTGATTATGTTGACCGTGGGAAACAGAGTATAGAAACTATATGTCTTCTCCTTGCGTATAAGATTAAGTACCCAGAGAACTTCTTCCTCCTTAGGGGAAACCATGAGTGCGCATCTATCAACCGAATCTACGGATTCTTTGATGAATGCAAAAGGAGGTTTAATGTTCGTATTTGGAAGGTTTTTACTGATTGTTTCAACTGCCTCCCTGTGGCTGCACTTATTGATGACAAGATCCTATGCATGCATGGGGGTTTATCTCCTGACCTAAAGAACATGGACCAGATTCGCAACATTGCCCGCCCAGTTGATGTTCCAGACCAT GGTCTCCTGTGTGATCTG TTGTGGTCAGACCCAGATAAAGAAATCGAAGGTTGGGGTGAGAATGACAGGGGTGTATCATACACTTTTGGAGCTGATAAGGTCGCTGAGTTTCTCCAGACACATGATCTAGATCTGATCTGCAGGGCTCACCAGGTTGTGGAGGATGGCTATGAATTCTTTGCTAAGCGCCAGCTTGTAACCATATTCTCTGCACCCAACTATTGTGGCGAGTTTGACAATGCGGGGGCGATGATGAGCATTGATGATTCTCTTACATGCTCATTCCAG AT CCTTAAGCCTTCTGATAAGAAAGGA AAAGCAGGAAC CGGAAATATGTCAAAACCTGGAACTCCACCAAGGAAGATAAAAATTAATATTATTTAGGCAGATTCCCACTAATGTGAACTGAGAAATTGTGATGGAGTACTCCTCCAAACTTGTTATTGGAAGATTTTTGGTGCGCATGACACTGTTGAAAAATGTCGACCTGCGTACCTTTGTGTTTTCACTGTCTGATGCAAATCTGTCCTGCCGTTATTCCTGCTGAAAAGAAGATCATACTTCGGCTGTTCGGCAAAAACCATACTTGGAAGCCTTCTTTAACATGGATTACTTATTTCTTCTTGATCTGCTACATAAGTCAGAAACCAGAATATCTGTCAATGGGTAGGCATAGGGAAACTACTAGTCTCATGTAGATTTTGTTCAATGCTGTATGCCATTCACCTGTAAAGTGTGCCTTTGAAAGGGACTGACTGATTAGCTGAAGTCTTTTACTGATGCTGATTG CATAGAATGGTAACTTTTTAC ]
[+] EMBL CB619986 [ CCTCCTCCTTGACACCGCCGATCGAAGGAAAAAAAAAAGCTAGGGTTTAGCTGCCTCTCTCGCTCGCCATCGCTCGCGGCGACTCGCTGCTAGGGTTTTTGGG TCTCTCTCTCTCTCCACCGGCGATGGATGCGGCGGCGCTCGACGACTTGATCCGGCGGCTCCTGGACGCCCGCGGCGGCCGCACGGCGCGCCCCGCGCAGCTC GCCGACGCGGAGATCCGCAAGCTCTGCGCCGCCGCCAAGGACGTCTTCCTCTCCCAGCCCAACCTCCTCGAGCTCGAGGCCCCCATCAAATTCTGCGGAGATATCCATGGCCAGTATTCTGATCTTCTTCGGTTATTTGAGTATGGGGGCTTCCCACCAGAGGCAAACTACTTGTTTCTAGGTGATTATGTTGACCGTGGGAAACAGAGTATAGAAACTATATGTCTTCTCCTTGCGTATAAGATTAAGTACCCAGAGAACTTCTTCCTCCTTAGGGGAAACCATGAGTGCGCATCTATCAACCGAATCTACGGATTCTTTGATGAATGCAAAAGGAGGTTTAATGTTCGTATTTGGAAGGTTTTTACTGATTGTTTCAACTGCCTCCCTGTGGCTGCACTTATTGATGACAAGATCCTATGCATGCATGGGGGTTTATCTCCTGACCTAAAGAACATGGACCAGATTCTCAACATTGCCCGCCCAGTTGATGTTCCAGACCATGGGTCTCCTGTGTGATCTG TTGTGGTCAGACCCA ]
[-] EMBL AU161643 [ CCGC CAGCTCGGCCGACGCGGAGATCCGCAAGCTCTGCGCCGCCGCCAAGGACGTCTTCCTCTCCCAGCCCAACCTCCTCGAGCTCGAGGCCCCCATCAAAATCTGCGGAGATATCCATGGCCAGTATTCTGATCTTCTTCGGTTATTTGAGTATGGGGGCTTCCCACCAGAGGCAAACTACTTGTTTCTAGGTGATTATGTTGACCGTGGGAAACAGAGTATAGAAACTATATGTCTTCTCCTTGCGTATAAGATTAAGTACCCAGAGAACTTCTTCCTCCTTAGGGGAAACCATGAGTGCGCATCTATCAACCGAATCTACGGATTCTTTGATGAATGCAAAAGGAGGTTTAATGTTCGTATTTGGAAGGTTTTTACTGATTGTTTCAACTGCCTCCCTGTGGCTGCACTTATTGATGACAAGATCCTATGCATGCATGGGGGTTTATCTCCTGACCTAAAGAACATGGACCAGATTCGCAACATTGCCCGCCCAGTTGATGTTCCAGACCAT GGTCTCCTGTGTGATCTGTTTGTGGTCAGACCCAGATAAAGAAATC ]
[-] EMBL CF326708 [ AGCTTGTAACCATATTCTCTGCACCCAACTATTGTGGCGAGTTTGACAATGCGGGGGCGATGATGAGCATTGATGATTCTCTTACATGCTCATTCCAG AT CCTTAAGCCTTCTGATAAGAAAGGA AAAGCAGGAAC CGGAAATATGTCAAAACCTGGAACTCCACCAAGGAAGATAAAAATTAATATTATTTAGGCAGATTCCCACTAATGTGAACTGAGAAATTGTGATGGAGTACTCCTCCAAACTTGTTATTGGAAGATTTTTGGTGCGCATGACACTGTTGAAAAATGTCGACCTGCGTACCTTTGTGTTTTCACTGTCTGATGCAAATCTGTCCTGCCGTTATTCCTGCTGAAAAGAAGATCATACTTCGGCTGTTCGGCAAAAACCATACTTGGAAGCCTTCTTTAACATGGATTACTTATTTCTTCTTGATCTGCTACATAAGTCAGAAACCAGAATATCTGTCAATGGGTAGGCATAGGGAAACTACTAGTCTCATGTAGATTTTGTTCAATGCTGTATGCCATTCACCTGTAAAGTGTGCCTATGAAAGGGACTGACTGATTAGCTGAAGTCTTTTACTGATGCTGATTG CATAGAATGGTAACTTTTTACCCAGCAGCTGATAGTTAAGTGTCTTTATCTATGTGATAGGTGCTTTGTCATTGCCATTTTAAACAAGCATTTT]
[+] EMBL BM421869 [ aCATTGATGATTCTCTTACATGCTCATTCCAGTATCCCTTAAGCCTTCTGATAAGAAAGGAGAAAGCAGGAACGCGGAAATATGTCAAAACCTGGAACTCCACCAAGGAAGATAAAAATTAATATTATTTAGGCAGATTCCCACTAATGTGAACTGAGAAATTGTGATGGAGTACTCCTCC AACTTGTTATTGGAAGATTTTTGGTGCGCATGACACTGTTGAAAAATGTCGACCTGCGTACCTTTGTGTTTTCACTGTCTGATGCAAATCTGTCCTGCCGTTATTCCTGCTGAAAAGAAGATCATACTTCGGCTGTTCGGCNAAAACCATACTTGGAAGCCTTCTTTAACATGGATTACTTATTTCTTCTTGATCTGCTACATAAGTCAGAAACCAGAATATCTGTC ATGGGTAGGCATAGGGAAACTACTAGTCTCATGTAGATTTTGTTCAATGCTGTATGCCATTCACCTGTAAAGTGTGCCTTTGAAAGGGACTGACTGATTAGCTGAAGTCTTTTACTGATGCTGATTGCCATAGAATGGTNACTTTTTACCCAGCAaaaaaaaaa ]
[-] EMBL CB619987 [ CTCCACCAAGGAAGATAAAAATTAATATTATTTAGGCAGATTCCCACTAATGTGACCTGAGAAATTGTGATGGAGTACTCCTCCAAACTTGTTATTGGAAGATTTTTGGTGGGCATGACACTGTTGAAAAATGTCGACCTGCGTCCCTTTGTGTTTTCACTGTGTGATGCAAATCTGTCCTGCCGTTATTCCTGCCGAAAAGAAGATCATACTTCGGCTGTTCGGCAAAAACCATGTTTGGAAGCTTTCTTTAACACGGATTACTTATTTCTTCTGGATCTGCTCCATAAGTCAGAAACCAGAATATCTGTCAATGGGTAGCCATGGGGAATCTACTAGTCTCATGTAGATTTTGTTCAATGCTGTATGCCATTCACCTGTAAAGTGTGCCTTTGAAAGGGACTGACTGATTAGCTGAAGTCTTTTACTGATGCTGATTG CATAGAATGGTAACTTTTTACCCAGCAGCCGATAGTTAAGTGTTTTTATCTATGTGATAGGTGCTTTGTC ]
consensusID : consensus_12962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1306 fasta sequence
[TTCCTCTCTCTCCCCCTTCCTCCTCCTCCGGCCGGTCCGGTCACCGCCTGCCTCGTCGTCGCCGGCGCTGATCGGTTTCGCCCGCCCGACCGCGGCGGAGATCGAGGTATGATGGACGGGAACGCGGTGGACGAGCTGATACGGCGGCTGCTCGACGGGAAGAAGGTCAAGCCGTCGTCGTCGGCGAAGAAGGTGCAGCTCAGCGAGGCGGAGATCCGGCAGCTCTGCGTCACCGGCAAGGACATCTTCCTCTCCCAGCCCAACCTCCTCGAGCTCGAGGCCCCCATCAACGTCTGCGGCGACATCCACGGCCAATTCTCCGACCTGCTCCGGCTGTTCGAGTTCGGCGGGCTGCCGCCGACGGCGAACTACCTGTTCCTCGGCGACTACGTGGACCGCGGGAAGCAGAGCATCGAGACGATCTGCCTCCTGCTGGCATACAAGATCAAGTACCCGGACAACTTCTTCCTGCTGCGAGGCAACCACGAGTGCGCGTCGATCAACCGAATCTACGGGTTCTACGACGAGTGCAAGCGCCGGTTCAGCGTCCGCCTCTGGAAGCTCTTCACCGACTGCTTCAACTGCCTCCCCGTCGCCGCCGTCATCGACGACAAGATCCTCTGCATGCACGGCGGCCTCTCGCCGGACCTCGACAGCCTCGACCGGATCAGGGAGATCGCCCGACCCGTCGACGTCCCCGACCAGGGCCTCCTCTGCGACCTCCTCTGGTCCGACCCCGACCGCGAGAGCTCCGGCTGGGGCGAGAACGACCGCGGCGTCTCCTTCACCTTCGGCGCCGACAAGGTCACCGAGTTCCTCAACAAGCACGACCTCGACCTCATCTGCCGCGCTCACCAGGTGGTGGAGGACGGCTACGAGTTCTTCGCGGACAGGCAGCTGGTGACCATATTCTCGGCGCCGAACTACTGCGGCGAGTTCAACAACGCCGGCGCGCTGATGAACGTGGACGCCAGCCTGCTCTGCTCGTTCCAGATCCTCAAGCCGTTCAGAGGCAAGTCGCAGGCGGAGTGACGACGAAGAGACGACGCCGGCGAGGCTAGCCGGCCGTCGATCGAGGCAGAGAATTTTTCTTTTTTTTTTGGGGATTTAGACAGAGGCTTCGTATACGTAGATCTGCATGCGCATTTCACAGCACAGAATTTTCTCGTTGATGCATATTTGGGGGGACAAACAGATGATCCAACCTCCACTTCTTCTGAATCCTTTGCTTGTAAACTGATTCAATACTTGTATATATAACCAATTAACCAAACATATAGTTCCTTAATCCTATATATGCATGGTC]
[+] EMBL AK121378 [TTCCTCTCTCTCCCCCTTCCTCCTCCTCCGGCCGGTCCGGTCACCGCCTGCCTCGTCGTCGCCGGCGCTGATCGGTTTCGCCCGCCCGACCGCGGCGGAGATCGAGGTATGATGGACGGGAACGCGGTGGACGAGCTGATACGGCGGCTGCTCGACGGGAAGAAGGTCAAGCCGTCGTCGTCGGCGAAGAAGGTGCAGCTCAGCGAGGCGGAGATCCGGCAGCTCTGCGTCACCGGCAAGGACATCTTCCTCTCCCAGCCCAACCTCCTCGAGCTCGAGGCCCCCATCAACGTCTGCGGCGACATCCACGGCCAATTCTCCGACCTGCTCCGGCTGTTCGAGTTCGGCGGGCTGCCGCCGACGGCGAACTACCTGTTCCTCGGCGACTACGTGGACCGCGGGAAGCAGAGCATCGAGACGATCTGCCTCCTGCTGGCATACAAGATCAAGTACCCGGACAACTTCTTCCTGCTGCGAGGCAACCACGAGTGCGCGTCGATCAACCGAATCTACGGGTTCTACGACGAGTGCAAGCGCCGGTTCAGCGTCCGCCTCTGGAAGCTCTTCACCGACTGCTTCAACTGCCTCCCCGTCGCCGCCGTCATCGACGACAAGATCCTCTGCATGCACGGCGGCCTCTCGCCGGACCTCGACAGCCTCGACCGGATCAGGGAGATCGCCCGACCCGTCGACGTCCCCGACCAGGGCCTCCTCTGCGACCTCCTCTGGTCCGACCCCGACCGCGAGAGCTCCGGCTGGGGCGAGAACGACCGCGGCGTCTCCTTCACCTTCGGCGCCGACAAGGTCACCGAGTTCCTCAACAAGCACGACCTCGACCTCATCTGCCGCGCTCACCAGGTGGTGGAGGACGGCTACGAGTTCTTCGCGGACAGGCAGCTGGTGACCATATTCTCGGCGCCGAACTACTGCGGCGAGTTCAACAACGCCGGCGCGCTGATGAACGTGGACGCCAGCCTGCTCTGCTCGTTCCAGATCCTCAAGCCGTTCAGAGGCAAGTCGCAGGCGGAGTGACGACGAAGAGACGACGCCGGCGAGGCTAGCCGGCCGTCGATCGAGGCAGAGAATTTTTCTTTTTTTTTTGGGGATTTAGACAGAGGCTTCGTATACGTAGATCTGCATGCGCATTTCACAGCACAGAATTTTCTCGTTGATGCATATTTGGGGGGACAAACAGATGATCCAACCTCCACTTCTTCTGAATCCTTTGCTTGTAAACTGATTCAATACTTGTATATATAACCAATTAACCAAACATATAGTTCCTTAATCCTATATATGCATGGTC]
[+] EMBL C72905 [ CCTCCTCCGGCCGGTCCGGTCACCGCCTGCCTCGTCGTCGCCGGCGCTGATCGGTTTCGCCCGCCCGACCGCGGCGGAGATCGAGGTATGATGGACGGGAACGCGGTGGACGAGCTGATACGGCGGCTGCTCGACGGGAAGAAGGTCAAGCCGTCGTCGTCGGCGAAGAAGGTGCAGCTCAGCGAGGCGGAGATCCGGCAGCTCTGCGTCACCGGCAAGGACATCTTCCTCTCCCAGCCCAACCTCCTCGAGCTCGAGGCCCCCATCAACGTCTGCGGCGACATCCACGGCCAATTCTCCGACCTGCTCCGGCTGTTCGAGTTCGGCGGGCTG CGGCGACGGGAAACTAACTGTTCCTCGGCGANTANGTGGACCGCGGGAAGAAGA NATCGA AAGAT ]
[+] EMBL AU165543 [ cCAACAACGCCGGCGCGCTGATGAACGTGGNCGCCAGCCTGCTCTGCTCGTTCCAGATCCTCAAGCCGTTCAGAGGCAAGTCGCAGGCGGNGTGACGACGAAGAGACGACGCCGGCGAGGCTAGCCGGCCGTCGATCGAGGCAGAGAATTTTTCTTTTTTTTTTGGGGATTTAGACAGAGGCTTCGTATACGTAGATCTGCATGCGCATTTCACAGCACAGAATTTTCTCGTTGATGCATATTTGGGGGGACAAACAGATGATCCAACCTCCACTTCTTCTGAATCCTTTGCTTGTAAACTGATTCAATACTTGTATATATAACCAATTAACCAAACATATAGTTCCTTAAaaa ]
consensusID : consensus_12962#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence
[TCTGATAAGAAAGGAAAAGCAGGAACCGGAAATATGTCAAAACCTGGAACTCCACCAAGGAAGATNAAAATTAATATTATTTAGGCAGATTCCCACTAATGTGAACTGAGAAATTGTGATGGAGTACTCCTCCAAACTTGTTATTGGAAGATTTTTGGTGCGCATGACACTGTTNAAAAATGTCGACCTGCGTACCTTTGTGTTTTTNANANAANA]
[-] EMBL OSS2103A [TCTGATAAGAAAGGAAAAGCAGGAACCGGAAATATGTCAAAACCTGGAACTCCACCAAGGAAGATNAAAATTAATATTATTTAGGCAGATTCCCACTAATGTGAACTGAGAAATTGTGATGGAGTACTCCTCCAAACTTGTTATTGGAAGATTTTTGGTGCGCATGACACTGTTNAAAAATGTCGACCTGCGTACCTTTGTGTTTTTNANANAANA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12962#0 CCGTTCGCTCTCCCTCCTCCTCCTCCTCGTCTCCGCCGATCGAAGGAAAACAAAAAGCTA 60
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 -------------TTCCTCTCTCTCCCCCTTCCTCCTCCTCCGGCCGGTCCGGTCACCGC 47
consensus_12962#0 GGGTTTAGCTGCCTCTCTCGCTCGCCATCGCTCGCGGCGACTCGCTGCTAGGGTTTTTGG 120
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CTGCCTCGTCGTCGCCGGCGCTGATCGGTTTCGCCCGCCCGACCGCGGCGGAGATCGAGG 107
consensus_12962#0 GTCTCTCTCTCTCTCTCCACCGGCGATGGATGCGGCGGCGCTCGACGACTTGATCCGGCG 180
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 TATGATGGACGGGAACGCGGTGGACGAGCTGATACGGCGGCTGCTCGACGGGAAGAAGGT 167
consensus_12962#0 GCTCCTGGACGCCCGCGGCGGCCGCACGGCGCGCCCCGCGCAGCTCGCCGACGCGGAGAT 240
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CAAGCCGTCGTCGTCGGCGAAGAAGGTGCAGCTCAGCGAGGCGGAGATCCGGCAGCTCTG 227
consensus_12962#0 CCGCAAGCTCTGCGCCGCCGCCAAGGACGTCTTCCTCTCCCAGCCCAACCTCCTCGAGCT 300
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CGTCACCGGCAAGGACATCTTCCTCTCCCAGCCCAACCTCCTCGAGCTCGAGGCCCCCAT 287
consensus_12962#0 CGAGGCCCCCATCAAAATCTGCGGAGATATCCATGGCCAGTATTCTGATCTTCTTCGGTT 360
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CAACGTCTGCGGCGACATCCACGGCCAATTCTCCGACCTGCTCCGGCTGTTCGAGTTCGG 347
consensus_12962#0 ATTTGAGTATGGGGGCTTCCCACCAGAGGCAAACTACTTGTTTCTAGGTGATTATGTTGA 420
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CGGGCTGCCGCCGACGGCGAACTACCTGTTCCTCGGCGACTACGTGGACCGCGGGAAGCA 407
consensus_12962#0 CCGTGGGAAACAGAGTATAGAAACTATATGTCTTCTCCTTGCGTATAAGATTAAGTACCC 480
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 GAGCATCGAGACGATCTGCCTCCTGCTGGCATACAAGATCAAGTACCCGGACAACTTCTT 467
consensus_12962#0 AGAGAACTTCTTCCTCCTTAGGGGAAACCATGAGTGCGCATCTATCAACCGAATCTACGG 540
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CCTGCTGCGAGGCAACCACGAGTGCGCGTCGATCAACCGAATCTACGGGTTCTACGACGA 527
consensus_12962#0 ATTCTTTGATGAATGCAAAAGGAGGTTTAATGTTCGTATTTGGAAGGTTTTTACTGATTG 600
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 GTGCAAGCGCCGGTTCAGCGTCCGCCTCTGGAAGCTCTTCACCGACTGCTTCAACTGCCT 587
consensus_12962#0 TTTCAACTGCCTCCCTGTGGCTGCACTTATTGATGACAAGATCCTATGCATGCATGGGGG 660
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CCCCGTCGCCGCCGTCATCGACGACAAGATCCTCTGCATGCACGGCGGCCTCTCGCCGGA 647
consensus_12962#0 TTTATCTCCTGACCTAAAGAACATGGACCAGATTCGCAACATTGCCCGCCCAGTTGATGT 720
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CCTCGACAGCCTCGACCGGATCAGGGAGATCGCCCGACCCGTCGACGTCCCCGACCAGGG 707
consensus_12962#0 TCCAGACCATGGTCTCCTGTGTGATCTGTTGTGGTCAGACCCAGATAAAGAAATCGAAGG 780
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CCTCCTCTGCGACCTCCTCTGGTCCGACCCCGACCGCGAGAGCTCCGGCTGGGGCGAGAA 767
consensus_12962#0 TTGGGGTGAGAATGACAGGGGTGTATCATACACTTTTGGAGCTGATAAGGTCGCTGAGTT 840
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CGACCGCGGCGTCTCCTTCACCTTCGGCGCCGACAAGGTCACCGAGTTCCTCAACAAGCA 827
consensus_12962#0 TCTCCAGACACATGATCTAGATCTGATCTGCAGGGCTCACCAGGTTGTGGAGGATGGCTA 900
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CGACCTCGACCTCATCTGCCGCGCTCACCAGGTGGTGGAGGACGGCTACGAGTTCTTCGC 887
consensus_12962#0 TGAATTCTTTGCTAAGCGCCAGCTTGTAACCATATTCTCTGCACCCAACTATTGTGGCGA 960
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 GGACAGGCAGCTGGTGACCATATTCTCGGCGCCGAACTACTGCGGCGAGTTCAACAACGC 947
consensus_12962#0 GTTTGACAATGCGGGGGCGATGATGAGCATTGATGATTCTCTTACATGCTCATTCCAGAT 1020
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 CGGCGCGCTGATGAACGTGGACGCCAGCCTGCTCTGCTCGTTCCAGATCCTCAAGCCGTT 1007
consensus_12962#0 CCTTAAGCCTTCTGATAAGAAAGGAAAAGCAGGAACCGGAAATA-TGTCAAAACCTGGAA 1079
consensus_12962#2 ----------TCTGATAAGAAAGGAAAAGCAGGAACCGGAAATA-TGTCAAAACCTGGAA 49
consensus_12962#1 CAGAGGCAAGTCGCAGGCGGAGTGACGACGAAGAGACGACGCCGGCGAGGCTAGCCGGCC 1067
** * * * ** * * ** ** * * * **
consensus_12962#0 CTCCACCAAGGAAGATAAAAATTAATATTATTTAGGCAGATTCCCACTAATG--TGAACT 1137
consensus_12962#2 CTCCACCAAGGAAGATNAAAATTAATATTATTTAGGCAGATTCCCACTAATG--TGAACT 107
consensus_12962#1 GTCGATCGAGGCAGAGAATTTTTCTTTTTTTTTTGG-GGATTTAGACAGAGGCTTCGTAT 1126
** * * *** *** * ** * ** *** ** **** ** * * * *
consensus_12962#0 GAGAAATTGTGATGGAGTACTCCTCCAAAC------TTGTTATTGGAAGATTTTTGGTGC 1191
consensus_12962#2 GAGAAATTGTGATGGAGTACTCCTCCAAAC------TTGTTATTGGAAGATTTTTGGTGC 161
consensus_12962#1 ACGTAGATCTGCATGCGCATTTCACAGCACAGAATTTTCTCGTTGATGCATATTTGGGGG 1186
* * * ** * * * * * * ** ** * *** ** ***** *
consensus_12962#0 GCATGACAC-TGTTGAAAAATGTCGACCTGCGTACCTTTGTGTTTTCACTGTCTGATGCA 1250
consensus_12962#2 GCATGACAC-TGTTNAAAAATGTCGACCTGCGTACCTTTGTGTTTTTNANANAANA---- 216
consensus_12962#1 GACAAACAGATGATCCAACCTCCACTTCTTCTGAATCCTTTGCTTGTAAACTGATTCAAT 1246
* *** ** * ** * ** * * * ** **
consensus_12962#0 AATCTGTCCTGCCGTTATTCCTGCTGAAAAGAAGATCATACTTCGGCTGTTCGGCAAAAA 1310
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 ACTTGTATATATAACCAATTAACCAAACATATAGTTCCTTAATCCTATATATGCATGGTC 1306
consensus_12962#0 CCATACTTGGAAGCCTTCTTTAACATGGATTACTTATTTCTTCTTGATCTGCTACATAAG 1370
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 ------------------------------------------------------------
consensus_12962#0 TCAGAAACCAGAATATCTGTCAATGGGTAGGCATAGGGAAACTACTAGTCTCATGTAGAT 1430
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 ------------------------------------------------------------
consensus_12962#0 TTTGTTCAATGCTGTATGCCATTCACCTGTAAAGTGTGCCTTTGAAAGGGACTGACTGAT 1490
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 ------------------------------------------------------------
consensus_12962#0 TAGCTGAAGTCTTTTACTGATGCTGATTGCATAGAATGGTAACTTTTTACCCAGCAGCTG 1550
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 ------------------------------------------------------------
consensus_12962#0 ATAGTTAAGTGTCTTTATCTATGTGATAGGTGCTTTGTCATTGCCATTTTAAACAAGCAT 1610
consensus_12962#2 ------------------------------------------------------------
consensus_12962#1 ------------------------------------------------------------
consensus_12962#0 TTT 1613
consensus_12962#2 ---
consensus_12962#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||