Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12964 cluster # 12964       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12964#0 length = 1876 sequences # 10  
consensus_12964#1 length = 440 sequences # 1  

consensusID : consensus_12964#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1876
fasta sequence
                              [GTTTAATTCGCCGCCACGCGCTTTGCCGGAAAGCCCCAAAAGCCCGACCACCACTGCCGCCGCGCCGCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCCGCCGGCCATCTCCGTCGATCCACCGTCCGGCGAGCAGACAGCAGCCCGGCAGATCTGCCCCCACCACGGGATCGAATCGGCGGGGGGAACCG-AATCGGGGAGCG-CGGGAGGCGGGGAGCTTAGTTTGAGCTCGGTCGGCGGCGGCGGCGGCGGCCATGGTGAAGGAGACGGGGTACTACGACGTGCTAGGGGTGAGCCCGACCGCCACCGAGTCCGAGATCAAGAAGGCGTATTACATGAAGGCGCGGCAGGTCCATCCGGATAAGAACCCCAATGACCCGAAAGCCGCGGAGAATTTCCAGGCACTAGGAGAGGCATACCAAGTTCTTAGTGACCCTACGCAGCGCCAAGCTTATGACGCACATGGGAAATCTGGCATCTCAACGGAAGGGATAATTGATCCAGCAGCAATTTTTGCAATGCTATTTGGTAGTGAGTTGTTTGAAGATTATATTGGTCAACTGGCTATGGCATCAATGGCTTCACTTGATAATTTCGGTGAAGATGAACATATTGACACAAGGAGGTTGCACGAGAGAATGCAGGCTGTTCAAAAGGAAAGGGAAGAGAAACTTGCAGAGACACTGAAAAACCGACTGCACATTTACGTTCAAGGAAATAAAGAGGAATTTGTCCAGCTTGCTCAAGCTGAGGTGACCAGACTTAGCAATGCAGCATATGGCACTGTTATGTTAAACACTATCGGCTATGTATATTCGAGACAAGCTGCAAAAGAACTTGGGAAGAAAGCAATATTCTTGGGTGTTCCATTTGTAGCTGAGTGGTTCAGAGACAAAGGCCATTTCATCAAATCCCAAGTAACAGCTGCAGCAGGTGCAATAGCTTTGATGCAGTTGCAAGAAGACTTGAAGAAGTATCTTAGTGCTGAAGGCCATTACACAGAGGAGGAACTAGAAATGTTCATGCAAAACCACAAAAAGGTTATGGTTGATTCCTTGTGGAAGCTTAACGTTGCTGACATAGAAGCCACCCTATCACGAGTCTGTCAAATGGTGCTTCAAGATGGAAGCGTCAGGAGGGAGGAACTGCGTGCTCGTGCTAAAGGACTGAAAACATTAGGCAAAATTTTCCAGCGGGTTAAGCTCAACAATGATGAGGGGGAAGCATCGGATATGAGGAATATAGATAACATGGATGACAATGACGGGAGCTCCCCCGATACATCACCAAGAAGGGAACCACCATACAATCCTATCCCTAACCCTCCTCATGCTCAGAGCCCATATGTGGAGGCCCCACAGTTTGGAGGAACCTATTACCCATTCAATTTCCCAATGCCAACAGCTCCACCTGGTGCGCAGAGGGATCCAATTCCATGACACCATTTAAGCTTGCATGTGCTGTTGTTCTGTGCAATATTGCTGGTGAAATACTAGATCATTTGTGTGATGCATCATTTGTACCTGTAGTAGAGAACGGAGGTTTAGCTATCCTTCGCACCATTTATTCGGTTGTACAATCAGAGACTGGTCAGGTAGCAGCCGTGTACTGTTGTGTACAGTTGTTAACGCTCGTGTTGAGGCAGTAGTAGGTCAGCATTGGTGTACATGGTTTGGTGTTAATCTGCGGCCTCGTTCCGTTTAGCTTGACGTGCATCTTCTATGGAAAATGAAGCTGAGAAATAAAATCATGTTTATAGAAAAAAGAGTATTTCATGGAAATCTTGTGAATGAGTTTGTTGGCGGCATGTCGAATAACCATAATGTTTTGGAAATATCATTTGGATGAGAAACTGTTGGTCTTTCAAAAAAA]

[+] EMBL AK105364             [GTTTAATTCGCCGCCACGCGCTTTGCCGGAAAGCCCCAAAAGCCCGACCACCACTGCCGCCGCGCCGCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCCGCCGGCCATCTCCGTCGATCCACCGTCCGGCGAGCAGACAGCAGCCCGGCAGATCTGCCCCCACCACGGGATCGAATCGGCGGGGGGAACCG AATCGGGGAGCG CGGGAGGCGGGGAGCTTAGTTTGAGCTCGGTCGGCGGCGGCGGCGGCGGCCATGGTGAAGGAGACGGGGTACTACGACGTGCTAGGGGTGAGCCCGACCGCCACCGAGTCCGAGATCAAGAAGGCGTATTACATGAAGGCGCGGCAGGTCCATCCGGATAAGAACCCCAATGACCCGAAAGCCGCGGAGAATTTCCAGGCACTAGGAGAGGCATACCAAGTTCTTAGTGACCCTACGCAGCGCCAAGCTTATGACGCACATGGGAAATCTGGCATCTCAACGGAAGGGATAATTGATCCAGCAGCAATTTTTGCAATGCTATTTGGTAGTGAGTTGTTTGAAGATTATATTGGTCAACTGGCTATGGCATCAATGGCTTCACTTGATAATTTCGGTGAAGATGAACATATTGACACAAGGAGGTTGCACGAGAGAATGCAGGCTGTTCAAAAGGAAAGGGAAGAGAAACTTGCAGAGACACTGAAAAACCGACTGCACATTTACGTTCAAGGAAATAAAGAGGAATTTGTCCAGCTTGCTCAAGCTGAGGTGACCAGACTTAGCAATGCAGCATATGGCACTGTTATGTTAAACACTATCGGCTATGTATATTCGAGACAAGCTGCAAAAGAACTTGGGAAGAAAGCAATATTCTTGGGTGTTCCATTTGTAGCTGAGTGGTTCAGAGACAAAGGCCATTTCATCAAATCCCAAGTAACAGCTGCAGCAGGTGCAATAGCTTTGATGCAGTTGCAAGAAGACTTGAAGAAGTATCTTAGTGCTGAAGGCCATTACACAGAGGAGGAACTAGAAATGTTCATGCAAAACCACAAAAAGGTTATGGTTGATTCCTTGTGGAAGCTTAACGTTGCTGACATAGAAGCCACCCTATCACGAGTCTGTCAAATGGTGCTTCAAGATGGAAGCGTCAGGAGGGAGGAACTGCGTGCTCGTGCTAAAGGACTGAAAACATTAGGCAAAATTTTCCAGCGGGTTAAGCTCAACAATGATGAGGGGGAAGCATCGGATATGAGGAATATAGATAACATGGATGACAATGACGGGAGCTCCCCCGATACATCACCAAGAAGGGAACCACCATACAATCCTATCCCTAACCCTCCTCATGCTCAGAGCCCATATGTGGAGGCCCCACAGTTTGGAGGAACCTATTACCCATTCAATTTCCCAATGCCAACAGCTCCACCTGGTGCGCAGAGGGATCCAATTCCATGACACCATTTAAGCTTGCATGTGCTGTTGTTCTGTGCAATATTGCTGGTGAAATACTAGATCATTTGTGTGATGCATCATTTGTACCTGTAGTAGAGAACGGAGGTTTAGCTATCCTTCGCACCATTTATTCGGTTGTACAATCAGAGACTGGTCAGGTAGCAGCCGTGTACTGTTGTGTACAGTTGTTAACGCTCGTGTTGAGGCAGTAGTAGGTCAGCATTGGTGTACATGGTTTGGTGTTAATCTGCGGCCTCGTTCCGTTTAGCTTGACGTGCATCTTCTATGGAAAATGAAGCTGAGAAATAAAATCATGTTTATAG                                                                                                                 ]
[+] EMBL CB646360             [                       TGCCGGAAAGCCCCAAAAGCCCGACCACCACTGCCGCCGCGCCGCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCCGCCGGCCATCTCCGTCGATCCACCGTCCGGCGAGCAGACAGCAGCCCGGCAGATCTGCCCCCACCACGGGATCGAATCGGCGGGGGGAACCG AATCGGGGAGCG CGGGAGGCGGGGAGCTTAGTTTGAGCTCGGTCGGCGGCGGCGGCGGCGGCCATGGTGAAGGAGACGGGGTACTACGACGTGCTAGGGGTGAGCCCGACCGCCACCGAGTCCGAGATCAAGAAGGCGTATTACATGAAGGCGCGGCAGGTCCATCCGGATAAGAACCCCAATGACCCGAAAGCCGCGGAGAATTTCCAGGCACTAGGAGAGGCATACCAAGTTCTTAGTGACCCTACGCAGCGCCAAGCTTATGACGCACATGGGAAATCTGGCATCTCAACGGAAGGGATAATTGATCCAGCAGCAATTTTTGCAATGCTATTTGGTAGTGAGTTGTTTGAAGATTATATTGGTCAACTGGCTATGGCATCAATGGCTTCACTTGATAATTTCGGTGAAGATGAACATATTGACACAAGGAGGTTGCACGAGAGAATGCAGGCTGTTCAAAAGGAAAGGGAAGAGAAACTTGCAGAGACACTGAAAAACCGACTGCACATTTACGTTCAAGGAAATAAAGAGGAATTTGTCCAGCTTGCTCAAGCTGAGGTGACCAGACTTAGCAATGCAGCATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU077649             [                         CCGGAAAGCCCCAAAAGCCCGACCACCACTGCCGCCGCGCCGCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCCGCCGGCCATCTCCGTCGATCCACCGTCCGGCGAGCAGACAGCAGCCCGGCAGATCTG CCCCACCACGGGATCGAATCGGCGGGGGG ACCGAAATCGGGGAGCGCCGGGAGGCGGGGAGCTTAGTTTGAGCTCGGTCGGCGGCGGCGGCGGCGGCCATGGTGAAGGA ACGGGG ACTACGACGTGCTANGGGTNAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB640474             [                                   CCAAAAGCCCGACCACCACTGCCGCCGCGCCGCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCCGCCGGCCATCTCCGTCGATCCACCGTCCGGCGAGCAGACAGCAGCCCGGCAGATCTGCCCCCACCACGGGATCGAATCGGCGGGGGGAACCG AATCGGGGAGCG CGGGAGGCGGGGAGCTTAGTTTGAGCTCGGTCGGCGGCGGCGGCGGCGGCCATGGTGAAGGAGACGGGGTACTACGACGTGCTAGGGGTGAGCCCGACCGCCACCGAGTCCGAGATCAAGAAGGCGTATTACATGAAAGCGCGGCAGGTCCATCCGGATAAGAACCCCAATGACCCGAAAGCCGCGGAGAATTTCCAGGCACTAGGAGAGGCATACCAAGTTCTTAGTGACCCTACGCAGCGCCAAGCTTATGACGCACATGGGAAATCTGGCATCTCAACGGAAGGGATAATTGATCCAGCAGCAATTTTTGCAATGCTATTTGGTAGTGAGTTGTTTGAAGAATATATTGGTCAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB661580             [                                           CCGACCACCACTGCCGCCGCGCCGCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCCGCCGGCCATCTCCGTCGATCCACCGTCCGGCGAGCAGACAGCAGCCCGGCAGATCTGCCCCCACCACGGGATCGAATCGGCGGGGGGAACCG AATCGGGGAGCG CGGGAGGCGGGGAGCTTAGTTTGAGCTCGGTCGGCGGCGGCGGCGGCGGCCATGGTGAAGGAGACGGGGTACTACGACGTGCTAGGGGTGAGCCCGACCGCCACCGAGTCCGAGATCAAGAAGGCGTATTACATGAAGGCGCGGCAGGTCCATCCGGATAAGAACCCCAATGACCCGAAAGCCGCGGAGAATTTCCAGGCACTAGGAGAGGCATACCAAGTTCTTAGTGACCCTACGCAGCGCCAAGCTTATGACGCACATGGGAAATCTGGCATCTCAACGGAAGGGATAATTGATCCAGCAGCAATTTTTGCAATGCTATTTGGTAGTGAGTTGTTTGAAGATTATATTGGTCAACTGGCTATGGCATCAATGGCTTCACTTGATAATTTCGGTGAAGATGAACATATTGACACAAGGAGGTTGCACGAGAGAATGCAGGCTGTTCAAAAGGAAAGGGAAGAGAAACTTGCAGAGACACTGAAAAACCGACTGCACATTTACGTTCAAGGAAATAAAGAGGAATTTGTCCAGCTTGCTCAAGCTGAGGTGACCAGACTTAGCAATGCAGCATATGGCACTGTTATGTTAAACACTATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB672619             [                                              ACCACCCCTGCCGCCGCGCCGCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCCGCCGGCCATCTCCGTCGATCCACCGTCCGGCGAGCAGACAGCAGCCCGGCAGATCTGCCCCCACCACGGGATCGAATCGGCGGGGGGAACCG AATCGGGGAGCG CGGGAGGCGGGGAGCTTAGTTTGAGCTCGGTCGGCGGCGGCGGCGGCGGCCATGGTGAAGGAGACGGGGTACTACGACGTGCTAGGGGTGAGCCCGACCGCCACCGAGTCCGAGATCAAGAAGGCGTATTACATGAAGGCGCGGCAGGTCCATCCGGATAAGAACCCCAATGACCCGAAAGCCGCGGAGAATTTCCAGGCACTAGGAGAGGCATACCAAGTTCTTAGTGACCCTACGCAGCGCCAAGCTTATGACGCACATGGGAAATCTGGCATCTCAACGGAAGGGATAATTGATCCAGCAGCAATTTTTGCAATGCTATTTGGTAGTGAGTTGTTTGAAGATTATATTGGTCAACTGGCTATGGCATCAATGGCTTCACTTGATAATTTCGGTGAAGATGAACATATTGACACAAGGAGGTTGCACGAGAGAATGCAGGCTGTTCAAAAGGAAAGGGAAGAGAAACTTGCAGAGACACTGAAAAACCGACTGCACATTTACGTTCAAGGAAATAAAGAGGAATTTGTCCAGCTTGCTCAAGCTGAGGTGACCAGACTTAGCAATGCAGCATATGGCACTGTTATGTTAAACACTATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSS12747A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGGCTATGTATATTCGAGACAAGCTGCAAAAGAACTTGGGAAGAAAGCAATATTCTTGGGTGTTCCATTTGTAGCTGAGTGGTTCAGAGACAAAGGCCATTTCATCAAATCCCAAGTAACAGCTGCAGCAGGTGCAATAGCTTTGATGCAGTTGCAAGAAGACTTGAAGAAGTATCTTAGTGCTGAAGGCCATTACACAGAGGAGGAACTAGAAATGTTCATGCAAAACCACAAAAAGGTTATGGTTGATTCCTTGTGGAAGCTTAACGTTGCTGACATAGAAGCCACCCTATCACGAGTCTGTCAAATGGTGCTTCAAGNTGGAAGCGTCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB661581             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATCAAATCCCAAGTAACAGCTGCAGCAGGTGCAATAGCTTTGATGCAGTTGCAAGAAGACTTGAAGAAGTATCTTACTGCTGAAGGCCATTACACAGAGGAGGAACTAGAAATGTTCATGCAAAACCACAAAAAGGTTATGGTTGATTCCTTGTGGAAGCTTAACGTTGCTGACATAGAAGCCACCCTATCACGAGTCTGTCAAATGGTGCTTCAAGATGGAAGCGTCAGGAGGGAGGAACTGCGTGCTCGTGCTAAAGGACTGAAAACATTAGGCAAAATTTTCCAGCGGGTTAAGCTCAACAATGATGAGGGGGAAGCATCGGATATGAGGAATATAGATAACATGGATGACAATGACGGGAGCTCCCCCGATACATCACCAAGAAGGGAACCACCATACAATCCTATCCCTAACCCTCCTCATGCTCATAGCCCATATGTGGAGGCCCCACAGTTTGGAGGAACCTATTACCCATTCAATTTCCCAATGCCAACAGCTCCACCTGGTGCGCAGAGGGATCCAATTCCATGACACCATTTAAGCTTGCATGTGCTGTTGTTCTGTGCAATATTGCTGGTGAAATACTAGATCATTTGTGTGATGCATCATTTGTACCTGTAGTAGAGAACGGAGGTTTAGCTATCCTTCGCACCATTTATTCGGTTGTACAATCAGAGACTGGTCAGGTAGCAGCCGTGTACTGTTGTGTACAGTTGTTAACGCTCGTGTTGAGGCAGTAGTAGGTCAGCATTGGTGTACATGGTTTGGTGTTAATCTGCGGCCTCGTTCCGTTTAGCTTGACGTGCATCTTCTATGGAAAATGAAGCTGAGAAATAAAATCATGTTTATAAAAAAAAGA                                                                                                         ]
[+] EMBL AU172863             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATGCTCAGAGCCCATATGTGGAGGCCCCACAGTTTGGAGGAACCTATTACCCATTCAATTTCCCAATGCCAACAGCTCCACCTGGTGCGCAGAGGGATCCAATTCCATGACACCATTTAAGCTTGCATGTGCTGTTGTTCTGTGCAATATTGCTGGTGAAATACTAGATCATTTGTGTGATGCATCATTTGTACCTGTAGTAGAGAACGGAGGTTTAGCTATCCTTCGCACCATTTATTCGGTTGTACAATCAGAGACTGGTCAGGTAGCAGCCGTGTACTGTTGTGNANAGTTGTTAACGCTCGTGTTGAGGCAGTAGTAGGTCAGCATTGGTGTACATGGTTTGGTGTTAATCTGCGGCCTCGTTCCGTTTAGCTTGACGTGCATCTTCTATGGAAAATGAAGCTGAGAAATAAAAaaa                                                                                                                          ]
[+] EMBL BI812192             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACTGGTCAGGTAGCAGCCGTGTACTGTTGTGTACAGTTGTTAACGCTCGTGTTGAGGCAGTAGTAGGTCAGCATTGGTGTACATGGTTTGGTGTTAATCTGCGGCCTCGTTCCGTTTAGCTTGACGTGCATCTTCTATGGAAAATGAAGCTGAGAAATAAAATCATGTTTATAGTTTTGGGTGTATTTCATGGAAATCTTGTGAATGAGTTTGTTGGCGGCATGTCGAATAACCATAATGTTTTGGAAATATCATTTGGATGAGAAACTGTTGGTCTTTCAAAAAAA]


>consensus_12964#0 GTTTAATTCGCCGCCACGCGCTTTGCCGGAAAGCCCCAAAAGCCCGACCACCACTGCCGC CGCGCCGCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCCGCCGGCCATCTCCGTCG ATCCACCGTCCGGCGAGCAGACAGCAGCCCGGCAGATCTGCCCCCACCACGGGATCGAAT CGGCGGGGGGAACCGAATCGGGGAGCGCGGGAGGCGGGGAGCTTAGTTTGAGCTCGGTCG GCGGCGGCGGCGGCGGCCATGGTGAAGGAGACGGGGTACTACGACGTGCTAGGGGTGAGC CCGACCGCCACCGAGTCCGAGATCAAGAAGGCGTATTACATGAAGGCGCGGCAGGTCCAT CCGGATAAGAACCCCAATGACCCGAAAGCCGCGGAGAATTTCCAGGCACTAGGAGAGGCA TACCAAGTTCTTAGTGACCCTACGCAGCGCCAAGCTTATGACGCACATGGGAAATCTGGC ATCTCAACGGAAGGGATAATTGATCCAGCAGCAATTTTTGCAATGCTATTTGGTAGTGAG TTGTTTGAAGATTATATTGGTCAACTGGCTATGGCATCAATGGCTTCACTTGATAATTTC GGTGAAGATGAACATATTGACACAAGGAGGTTGCACGAGAGAATGCAGGCTGTTCAAAAG GAAAGGGAAGAGAAACTTGCAGAGACACTGAAAAACCGACTGCACATTTACGTTCAAGGA AATAAAGAGGAATTTGTCCAGCTTGCTCAAGCTGAGGTGACCAGACTTAGCAATGCAGCA TATGGCACTGTTATGTTAAACACTATCGGCTATGTATATTCGAGACAAGCTGCAAAAGAA CTTGGGAAGAAAGCAATATTCTTGGGTGTTCCATTTGTAGCTGAGTGGTTCAGAGACAAA GGCCATTTCATCAAATCCCAAGTAACAGCTGCAGCAGGTGCAATAGCTTTGATGCAGTTG CAAGAAGACTTGAAGAAGTATCTTAGTGCTGAAGGCCATTACACAGAGGAGGAACTAGAA ATGTTCATGCAAAACCACAAAAAGGTTATGGTTGATTCCTTGTGGAAGCTTAACGTTGCT GACATAGAAGCCACCCTATCACGAGTCTGTCAAATGGTGCTTCAAGATGGAAGCGTCAGG AGGGAGGAACTGCGTGCTCGTGCTAAAGGACTGAAAACATTAGGCAAAATTTTCCAGCGG GTTAAGCTCAACAATGATGAGGGGGAAGCATCGGATATGAGGAATATAGATAACATGGAT GACAATGACGGGAGCTCCCCCGATACATCACCAAGAAGGGAACCACCATACAATCCTATC CCTAACCCTCCTCATGCTCAGAGCCCATATGTGGAGGCCCCACAGTTTGGAGGAACCTAT TACCCATTCAATTTCCCAATGCCAACAGCTCCACCTGGTGCGCAGAGGGATCCAATTCCA TGACACCATTTAAGCTTGCATGTGCTGTTGTTCTGTGCAATATTGCTGGTGAAATACTAG ATCATTTGTGTGATGCATCATTTGTACCTGTAGTAGAGAACGGAGGTTTAGCTATCCTTC GCACCATTTATTCGGTTGTACAATCAGAGACTGGTCAGGTAGCAGCCGTGTACTGTTGTG TACAGTTGTTAACGCTCGTGTTGAGGCAGTAGTAGGTCAGCATTGGTGTACATGGTTTGG TGTTAATCTGCGGCCTCGTTCCGTTTAGCTTGACGTGCATCTTCTATGGAAAATGAAGCT GAGAAATAAAATCATGTTTATAGAAAAAAGAGTATTTCATGGAAATCTTGTGAATGAGTT TGTTGGCGGCATGTCGAATAACCATAATGTTTTGGAAATATCATTTGGATGAGAAACTGT TGGTCTTTCAAAAAAA



consensusID : consensus_12964#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence
                              [CAAAATTTTCCAGGGGGTTAAGCTCACCAATGATGAGGGGGAACCTTCGGATATGGGGAATATAGATACCAGGGATGCCAATGGGGGGAGTTCCCCCGATACTTCCCCAAGAAGGGACCCCCCATACAATCTTATCCCTACCCCTCCTCATGTTCAGAGCCCATATGTGGGGCCCCCCCAGTTTGGAGGACCTTTTTCCCCATTCAATTTCCCAATGCCAACAGTTCCCCTTGGTGGGCAGGGGGATCCAATTCCATGCCCCCATTTAAGTTTGCATGTGTTGTTTTTTTGTGCAATATTGTTGGTGAAATATTAGATCATTTGTGTGATGCATCATTTGTCCCTGTAGTAGAGAACGGAGGTTTAGTTATCCTTCCCCCCATTTATTGGGTTGTCCAATCAGAGATTGGTCAGGTACCACCCGTGTATTGTTGTGTCCA]

[-] EMBL CB672620             [CAAAATTTTCCAGGGGGTTAAGCTCACCAATGATGAGGGGGAACCTTCGGATATGGGGAATATAGATACCAGGGATGCCAATGGGGGGAGTTCCCCCGATACTTCCCCAAGAAGGGACCCCCCATACAATCTTATCCCTACCCCTCCTCATGTTCAGAGCCCATATGTGGGGCCCCCCCAGTTTGGAGGACCTTTTTCCCCATTCAATTTCCCAATGCCAACAGTTCCCCTTGGTGGGCAGGGGGATCCAATTCCATGCCCCCATTTAAGTTTGCATGTGTTGTTTTTTTGTGCAATATTGTTGGTGAAATATTAGATCATTTGTGTGATGCATCATTTGTCCCTGTAGTAGAGAACGGAGGTTTAGTTATCCTTCCCCCCATTTATTGGGTTGTCCAATCAGAGATTGGTCAGGTACCACCCGTGTATTGTTGTGTCCA]


>consensus_12964#1 CAAAATTTTCCAGGGGGTTAAGCTCACCAATGATGAGGGGGAACCTTCGGATATGGGGAA TATAGATACCAGGGATGCCAATGGGGGGAGTTCCCCCGATACTTCCCCAAGAAGGGACCC CCCATACAATCTTATCCCTACCCCTCCTCATGTTCAGAGCCCATATGTGGGGCCCCCCCA GTTTGGAGGACCTTTTTCCCCATTCAATTTCCCAATGCCAACAGTTCCCCTTGGTGGGCA GGGGGATCCAATTCCATGCCCCCATTTAAGTTTGCATGTGTTGTTTTTTTGTGCAATATT GTTGGTGAAATATTAGATCATTTGTGTGATGCATCATTTGTCCCTGTAGTAGAGAACGGA GGTTTAGTTATCCTTCCCCCCATTTATTGGGTTGTCCAATCAGAGATTGGTCAGGTACCA CCCGTGTATTGTTGTGTCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12964#0      GTTTAATTCGCCGCCACGCGCTTTGCCGGAAAGCCCCAAAAGCCCGACCACCACTGCCGC 60
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      CGCGCCGCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCCGCCGGCCATCTCCGTCG 120
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      ATCCACCGTCCGGCGAGCAGACAGCAGCCCGGCAGATCTGCCCCCACCACGGGATCGAAT 180
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      CGGCGGGGGGAACCGAATCGGGGAGCGCGGGAGGCGGGGAGCTTAGTTTGAGCTCGGTCG 240
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      GCGGCGGCGGCGGCGGCCATGGTGAAGGAGACGGGGTACTACGACGTGCTAGGGGTGAGC 300
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      CCGACCGCCACCGAGTCCGAGATCAAGAAGGCGTATTACATGAAGGCGCGGCAGGTCCAT 360
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      CCGGATAAGAACCCCAATGACCCGAAAGCCGCGGAGAATTTCCAGGCACTAGGAGAGGCA 420
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      TACCAAGTTCTTAGTGACCCTACGCAGCGCCAAGCTTATGACGCACATGGGAAATCTGGC 480
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      ATCTCAACGGAAGGGATAATTGATCCAGCAGCAATTTTTGCAATGCTATTTGGTAGTGAG 540
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      TTGTTTGAAGATTATATTGGTCAACTGGCTATGGCATCAATGGCTTCACTTGATAATTTC 600
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      GGTGAAGATGAACATATTGACACAAGGAGGTTGCACGAGAGAATGCAGGCTGTTCAAAAG 660
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      GAAAGGGAAGAGAAACTTGCAGAGACACTGAAAAACCGACTGCACATTTACGTTCAAGGA 720
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      AATAAAGAGGAATTTGTCCAGCTTGCTCAAGCTGAGGTGACCAGACTTAGCAATGCAGCA 780
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      TATGGCACTGTTATGTTAAACACTATCGGCTATGTATATTCGAGACAAGCTGCAAAAGAA 840
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      CTTGGGAAGAAAGCAATATTCTTGGGTGTTCCATTTGTAGCTGAGTGGTTCAGAGACAAA 900
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      GGCCATTTCATCAAATCCCAAGTAACAGCTGCAGCAGGTGCAATAGCTTTGATGCAGTTG 960
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      CAAGAAGACTTGAAGAAGTATCTTAGTGCTGAAGGCCATTACACAGAGGAGGAACTAGAA 1020
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      ATGTTCATGCAAAACCACAAAAAGGTTATGGTTGATTCCTTGTGGAAGCTTAACGTTGCT 1080
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      GACATAGAAGCCACCCTATCACGAGTCTGTCAAATGGTGCTTCAAGATGGAAGCGTCAGG 1140
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      AGGGAGGAACTGCGTGCTCGTGCTAAAGGACTGAAAACATTAGGCAAAATTTTCCAGCGG 1200
consensus_12964#1      --------------------------------------------CAAAATTTTCCAGGGG 16
                                                                   ************* **

consensus_12964#0      GTTAAGCTCAACAATGATGAGGGGGAAGCATCGGATATGAGGAATATAGATAACATGGAT 1260
consensus_12964#1      GTTAAGCTCACCAATGATGAGGGGGAACCTTCGGATATGGGGAATATAGATACCAGGGAT 76
                       ********** **************** * ********* ************ ** ****

consensus_12964#0      GACAATGACGGGAGCTCCCCCGATACATCACCAAGAAGGGAACCACCATACAATCCTATC 1320
consensus_12964#1      GCCAATGGGGGGAGTTCCCCCGATACTTCCCCAAGAAGGGACCCCCCATACAATCTTATC 136
                       * *****  ***** *********** ** *********** ** ********** ****

consensus_12964#0      CCTAACCCTCCTCATGCTCAGAGCCCATATGTGGAGGCCCCACAGTTTGGAGGAACCTAT 1380
consensus_12964#1      CCTACCCCTCCTCATGTTCAGAGCCCATATGTGGGGCCCCCCCAGTTTGGAGGACCTTTT 196
                       **** *********** ***************** * **** ************ * * *

consensus_12964#0      TACCCATTCAATTTCCCAATGCCAACAGCTCCACCTGGTGCGCAGAGGGATCCAATTCCA 1440
consensus_12964#1      TCCCCATTCAATTTCCCAATGCCAACAGTTCCCCTTGGTGGGCAGGGGGATCCAATTCCA 256
                       * ************************** *** * ***** **** **************

consensus_12964#0      TGACACCATTTAAGCTTGCATGTGCTGTTGTTCTGTGCAATATTGCTGGTGAAATACTAG 1500
consensus_12964#1      TGCCCCCATTTAAGTTTGCATGTGTTGTTTTTTTGTGCAATATTGTTGGTGAAATATTAG 316
                       ** * ********* ********* **** ** ************ ********** ***

consensus_12964#0      ATCATTTGTGTGATGCATCATTTGTACCTGTAGTAGAGAACGGAGGTTTAGCTATCCTTC 1560
consensus_12964#1      ATCATTTGTGTGATGCATCATTTGTCCCTGTAGTAGAGAACGGAGGTTTAGTTATCCTTC 376
                       ************************* ************************* ********

consensus_12964#0      GCACCATTTATTCGGTTGTACAATCAGAGACTGGTCAGGTAGCAGCCGTGTACTGTTGTG 1620
consensus_12964#1      CCCCCATTTATTGGGTTGTCCAATCAGAGATTGGTCAGGTACCACCCGTGTATTGTTGTG 436
                        * ********* ****** ********** ********** ** ******* *******

consensus_12964#0      TACAGTTGTTAACGCTCGTGTTGAGGCAGTAGTAGGTCAGCATTGGTGTACATGGTTTGG 1680
consensus_12964#1      TCCA-------------------------------------------------------- 440
                       * **                                                        

consensus_12964#0      TGTTAATCTGCGGCCTCGTTCCGTTTAGCTTGACGTGCATCTTCTATGGAAAATGAAGCT 1740
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      GAGAAATAAAATCATGTTTATAGAAAAAAGAGTATTTCATGGAAATCTTGTGAATGAGTT 1800
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      TGTTGGCGGCATGTCGAATAACCATAATGTTTTGGAAATATCATTTGGATGAGAAACTGT 1860
consensus_12964#1      ------------------------------------------------------------
                                                                                   

consensus_12964#0      TGGTCTTTCAAAAAAA 1876
consensus_12964#1      ----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)