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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 672 fasta sequence
[CCCTTTCTCCCCCAAATCGGCGGCGACCTCTCTCCGATCTCCACCACCACCACCACCACGCGGGCGCGCGCACCAACCGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCA-CCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGC-AGCAGGAGCTGGCC-TCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACC-TC-GAACCCTAGAATACTGCATCTG--TTTT-ACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAATGCTTTGTAATTCTATTATTTTCTCTTCCNTTAGTTGTGCTGCTCTGAGAGTTTTCGTGAAAAA]
[+] EMBL CF339917 [CCCTTTCTCCCCCAAATCGGCGGCGACCTCTCTCCGATCTCCACCACCACCACCACCACGCGGGCGCGCGCACCAACCGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGTCCAAGGGCTACC ]
[+] EMBL AK108131 [ CCTTTCTCCCCCAAATCGGCGGCGACCTCTCTCCGATCTCCACCACCACCACCACCACGCGGGCGCGCGCACCAACCGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCA CCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGC AGCAGGAGCTGGCC TCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACC TC GAACCCTAGAATACTGCATCTG TTTT ACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAATGCTTTGTAATTCTATTATTTTCTCTTCCTTTAGTTGTGCTGCTCTGAG ]
[+] EMBL OSC820 [ GCGCGCACCAACCGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGNCGCCGCCGCCGGGGGNGGAGTCGCGGAAGTNGGAGGACTNGGAGTTGCCCTGCTACGTCAACTCGTTCCTCACCGTCGTCATCCT ]
[+] EMBL OSC829 [ GCGCGCACCAACCGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCG GGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGACGCCGCCGGGNGGNGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCANCGTCGTCATCCTCGGCGTCGGGCTCAACGGCAAGCCCGACCTTA ACCTCGAGACCTNGGCGCACCAGAAGGCGTTTGAGCGCTTNCAGCAAGCAGGAACTNGCCTTCCGGGGggagg ]
[+] EMBL OSC21201 [ GGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGC GGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCA CCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCG CTCCAGC AGCAGGAGCTGGCC TCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACC TC GAACCCTAGAATACTGCATCTG TTTT ACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGNTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGT ]
[+] EMBL OSR2327A [ ngngnCGGTGGACGACCNCATGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGG GNNGGAGTCGCGGAAGTGGGAGGACTGGNAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCA CCCTCGANACCTGGGCGCACCANAAGGCGCTCGAGCGCTNCCAGC AGCAGGAGCTGGCC TCCGGGGAGG CCAGGCCGAGTNATCTNCGCGCCTCAGGTCACCTTCNGAACCCTAGANTACTGCATCTGGTTTTTAACTCCCAAT ]
[+] EMBL AU184485 [ CAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCA CCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGC AGCAGGAGCTGGCC TCCGGGGAGGCCCAGGCCGAGTGATNTGCGCGCCTCAGGTCACC TC GAACCCTAGAATACTGCATCTG TTTT ACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAATGCTTTGTAATTCTATTATTTTCTCTTCCNTTAGTTGTGCTGCTCTGAGAGTTTTCGTGAAAAA]
[+] EMBL AU173349 [ CCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGNTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGC AGCAGGAGCTGGCC TCCGGGGAGGCCCAGGCCGAGTGATNTGCGCGCCTCAGGTCACC TC GAACCCTAGAATACTGCATCTG TTTT ACTCCCAATAAGATGTTTNAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAATGCTTTGTAATTCTATTATTTTCTCTTCCNTTAGTTGTGCTGCTCTGAGAGTTTTCGTGAAAAA]
[+] EMBL AU184824 [ GGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACTTCA CCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGC AGCAGGAGCTGGCC TCCGGGGAGGCCCAGGCCGAGTGATNTGCGCGCCTCAGGTCACC TC GAACCCTAGAATACTGCATCTG TTTT ACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAATGCTTTGTAATTCTATTATTTTCTCTTCaaaaaaaa ]
consensusID : consensus_12981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[GATCTCCACCACCACCACCACCACCACGCGGGCGCGCGCACCAACCGGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCGGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGACATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTGGCCTCCGGAGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGCGCTCTTGTTTCTGGGTTTGCTCTGATACCTCCAGGAATTTGGCCACCGACCGGCGAGTGCCCCTGAACATTTTTGAACGCTGTGGGAAGTGTATTAGGTTTCTCTGTGGAGGACGAGCAGAAGGGCCCGCTAGGGCC]
[+] EMBL CA757061 [GATCTCCACCACCACCACCACCACCACGCGGGCGCGCGCACCAACCGGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCGGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGACATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTGGCCTCCGGAGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGCGCTCTTGTTTCTGGGTTTGCTCTGATACCTCCAGGAATTTGGCCACCGACCGGCGAGTGCCCCTGAACATTTTTGAACGCTGTGGGAAGTGTATTAGGTTTCTCTGTGGAGGACGAGCAGAAGGGCCCGCTAGGGCC]
consensusID : consensus_12981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 516 fasta sequence
[CATGTTTAAAGAGGAGGATTCAGGATAAAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCC-TCCAGCAGCAGGAGCTGGCCTCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAAT-CCTCGTGAATTCTATTATTTTCTCTTCCTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF326741 [CATGTTTAAAGAGGAGGATTCAGGATAAAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCC TCCAGCAGCAGGAGCTGGCCTCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAAT CCTCGTG ]
[+] EMBL AU031155 [ ccgCCGACCTCACCCTCGAGNCCTGGGCGCACCAGNAAGCGCTCGNGCGCCTTCCAGCAGCAGGNGCTGGCCTCCGGGGNGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCNCCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGNTGAACNCTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGNTGGCGAATGCCCTGAACATTTTGAAATGCTTTGT AATTCTATTATTTTCTCTTCCTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12981#0 CCCTTTCTCCCCCAAATCGGCGGCGACCTCTCTCCGATCTCCACCACCACCACCACCACG 60
consensus_12981#1 ----------------------------GATCTCCA----CCACCACCACCACCACCACG 28
consensus_12981#2 ------------------------------------------------------------
consensus_12981#0 CGGGCGCGCGCACCAACCGGGGGGG-CTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGG 119
consensus_12981#1 CGGGCGCGCGCACCAACCGGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCGGCGGGGGG 88
consensus_12981#2 ------------------------------------------------------------
consensus_12981#0 GATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGA 179
consensus_12981#1 GATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGA 148
consensus_12981#2 ------------------------------------------------------------
consensus_12981#0 GGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAA 239
consensus_12981#1 GGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAA 208
consensus_12981#2 --CATGTTTAAAGAGGAGGATTCAGGATAA--AGGAGCAGCCCAAGGGCTACCTATTCAA 56
* * *** ** * ** * ****************************
consensus_12981#0 CCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTA 299
consensus_12981#1 CCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTA 268
consensus_12981#2 CCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTA 116
************************************************************
consensus_12981#0 CGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCT 359
consensus_12981#1 CGTCACCTCGTTCCTCACCGTCGACATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCT 328
consensus_12981#2 CGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCT 176
*********************** ************************************
consensus_12981#0 CACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTGGC 419
consensus_12981#1 CACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTGGC 388
consensus_12981#2 CACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTGGC 236
************************************************************
consensus_12981#0 CTCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATA 479
consensus_12981#1 CTCCGGAGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATA 448
consensus_12981#2 CTCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATA 296
****** *****************************************************
consensus_12981#0 CTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTT 539
consensus_12981#1 CTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGCGCTCTT 508
consensus_12981#2 CTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTT 356
***************************************************** ******
consensus_12981#0 GTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGAT-GGCGAATGCCC-TGA 597
consensus_12981#1 GTTTCTGGGTTTGCTCTGATACCTCCAGGAATTTGGCCACCGACCGGCGAGTGCCCCTGA 568
consensus_12981#2 GTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGAT-GGCGAATGCCC-TGA 414
******* **** **** * **** ******** *** ** ***** ***** ***
consensus_12981#0 ACATTTTGAAATGCTTTGT-AATTCTATTATTTTCTCTTCCNTTAGTTGTGCTGCTCTGA 656
consensus_12981#1 ACATTTTTGAACGCTGTGGGAAGTGTATTAGGTTTCTCTGTGGAGGACGAGCAG----AA 624
consensus_12981#2 ACATTTTGAAATCCT-CGTGAATTCTATTATTTTCTCTTCCTTTNAAAAAAAAAAAAAAA 473
******* ** ** * ** * ***** ** * *
consensus_12981#0 GAGTTTTCGTGAAAAA--------------------------- 672
consensus_12981#1 GGGCCCGCTAGGGCC---------------------------- 639
consensus_12981#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 516
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||