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Oryza sativa
cluster # 12982 cluster # 12982       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12982#0 length = 1123 sequences # 9  
consensus_12982#1 length = 1010 sequences # 1  
consensus_12982#2 length = 468 sequences # 2  

consensusID : consensus_12982#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1123
fasta sequence
                              [TTGGAAAACTAAGGTCAAACTTCCTTGGCACAAAATTTATAATCTATGACACACAGCCCTCTTATAATGGGGCTGTAATCCCTCCTGTTGGACGGAGCAGCCGAAGATTCAACTCCAAGAAAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTGACATATGAGCTTAATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCATGCACTCCATACCTGCCTCCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATTGTTCCCCGAGCTTTCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATCATGGATCGGTCCAT-GGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGACATTGCTGGAGGCACCATAAAT-GGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTGCTTCGCAACAAGGCCCCT-AGGT-GGCATGAGCAGCTCCAATGCTGGTGCCTTAATTTCC-GTGGGCGTGTAACCATTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCA-GGGGCTCCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAAGATTATTCTACAGTTTGGTAAGGTAGCAAAAGATATGTTCAC-AATGGATTACCGCTATCCGCTCTCAGCTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACA-CAAAACTGGCCTGCGAATGAGGGAAA-CAGTGAGCTCT-AATGGAGGCAGAACTGGAAATGC--AACA-GAGAG-CAA-CTTGAGAAATGTAATGCCCAAGGGCTCTAGATCATGTTTGCA-TTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAA-CTGGATTTCTCA-GCCTGTATGT-TTCACCTGGTAGCA-CCATGATA-GGTTTCCTTTGGGACA-GCGGTTCA-TGCATTGCATTTTTCCA-TTTGTGTGGTGTA-CA-TGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTTCTGGTAAAGAAAAGGGAAAGATTCAGTGCTTCAAAAAAAAAAAAAAAAAACTC]

[+] EMBL AK103583             [TTGGAAAACTAAGGTCAAACTTCCTTGGCACAAAATTTATAATCTATGACACACAGCCCTCTTATAATGGGGCTGTAATCCCTCCTGTTGGACGGAGCAGCCGAAGATTCAACTCCAAGAAAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTGACATATGAGCTTAATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCATGCACTCCATACCTGCCTCCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATTGTTCCCCGAGCTTTCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATCATGGATCGGTCCAT GGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGACATTGCTGGAGGCACCATAAAT GGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTGCTTCGCAACAAGGCCCCT AGGT GGCATGAGCAGCTCCAATGCTGGTGCCTTAATTTCC GTGGGCGTGTAACCATTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCA GGGGCTCCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAAGATTATTCTACAGTTTGGTAAGGTAGCAAAAGATATGTTCAC AATGGATTACCGCTATCCGCTCTCAGCTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACA CAAAACTGGCCTGCGAATGAGGGAAA CAGTGAGCTCT AATGGAGGCAGAACTGGAAATGC  AACA GAGAG CAA CTTGAGAAATGTAATGCCCAAGGGCTCTAGATCATGTTTGCA TTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAA CTGGATTTCTCA GCCTGTATGT TTCACCTGGTAGCA CCATGATA GGTTTCCTTTGGGACA GCGGTTCA TGCATTGCATTTTTCCA TTTGTGTGGTGTA CA TGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTTCTGGTAAAGAAAAGGGAAAGATTCAG                           ]
[+] EMBL AK069622             [TTGGAAAACTAAGGTCAAACTTCCTTGGCACAAAATTTATAATCTATGACACACAGCCCTCTTATAATGGGGCTGTAATCCCTCCTGTTGGACGGAGCAGCCGAAGATTCAACTCCAAGAAAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTGACATATGAGCTTAATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCATGCACTCCATACCTGCCTCCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATTGTTCCCCGAGCTTTCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATCATGGATCGGTCCAT GGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGACATTGCTGGAGGCACCATAAAT GGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTGCTTCGCAACAAGGCCCCT AGGT GGCATGAGCAGCTCCAATGCTGGTGCCTTAATTTCC GTGGGCGTGTAACCATTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCA GGGGCTCCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAAGATTATTCTACAGTTTGGTAAGGTAGCAAAAGATATGTTCAC AATGGATTACCGCTATCCGCTCTCAGCTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACA CAAAACTGGCCTGCGAATGAGGGAAA CAGTGAGCTCT AATGGAGGCAGAACTGGAAATGC  AACA GAGAG CAA CTTGAGAAATGTAATGCCCAAGGGCTCTAGATCATGTTTGCA TTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAA CTGGATTTCTCA GCCTGTATGT TTCACCTGGTAGCA CCATGATA GGTTTCCTTTGGGACA GCGGTTCA TGCATTGCATTTTTCCA TTTGTGTGGTGTA CA TGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTTCTGGTAAAGAAAAGGGAAAGATTCAG                           ]
[+] EMBL AK074017             [TTGGAAAACTAAGGTCAAACTTCCTTGGCACAAAATTTATAATCTATGACACACAGCCCTCTTATAATGGGGCTGTAATCCCTCCTGTTGGACGGAGCAGCCGAAGATTCAACTCCAAGAAAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTGACATATGAGCTTAATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCATGCACTCCATACCTGCCTCCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATTGTTCCCCGAGCTTTCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATCATGGATCGGTCCAT GGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGACATTGCTGGAGGCACCATAAAT GGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTGCTTCGCAACAAGGCCCCT AGGT GGCATGAGCAGCTCCAATGCTGGTGCCTTAATTTCC GTGGGCGTGTAACCATTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCAGGGGGCTCCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAAGATTATTCTACAGTTTGGTAAGGTAGCAAAAGATATGTTCAC AATGGATTACCGCTATCCGCTCTCAGCTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACA CAAAACTGGCCTGCGAATGAGGGAAA CAGTGAGCTCT AATGGAGGCAGAACTGGAAATGC  AACA GAGAG CAA CTTGAGAAATGTAATGCCCAAGGGCTCTAGATCATGTTTGCA TTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAA CTGGATTTCTCA GCCTGTATGT TTCACCTGGTAGCA CCATGATA GGTTTCCTTTGGGACA GCGGTTCA TGCATTGCATTTTTCCA TTTGTGTGGTGTA CA TGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCC                                                          ]
[+] EMBL AU031694             [        gngcntcCAAACTTCCTTGGCACAAAATTTATAATCTATGACACACAGCCCTCTTATAATGGGGCTGTAATCCCTCCTGTTGGACGGAGCAGCCGAAGATTCAACTCCAAGAAAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTGACATATGAGCTTAATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCATGCACTCCATACCTGCCTCCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATTGTTCCCCGAGCTTTCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATCATGGATCGGTCCATGGGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGACATTGCTGGAGGCACCATAAATGGGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTGCTTCGCAACAAGGCCCCTAAGGTGGGCATGAGCAGCTCCAATGCTGGTGCCTTAATTTCCGGTGGGCGTGTNACCATTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGgnctc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI811614             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAAGATTATTCTACAGTTTGGTAAGGTAGCCAAAGATATGTTCAC AATGGATTACCGCTATCCGCTCTCAACTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACA C AAACTGGCCTGCGAATGAGGGAAA CAGTGAGCTCT AATGGAGGCAGAACTGGAAATGC  AACA GAGAG CAA CTTGAGAAATGTAATGCCCAAGGGCTCTAGATCATGTTTGCA TTTT TTGTGTCGTCTT GCTGTATTTCTGCTTGTAGCCTGGAA CTGGATTTCTCA GCCTGTATGT TTCACCTGGTAGCA CCATGATA GGTTTCCTTTGGGACA GCGGTTCA TGCATTGCATTTTTCCA TTTGTGTGGTGTA CA TGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTTCTGGTAAAGAAAAGGGAAAGATTCAGTGCTTCAAAAA                ]
[+] EMBL BM420880             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      acGAGCAGGACAAGATTATTCTACAGTTTGGTAAGGTAGCCAAAGATATGTTCACAAATGGATTACCGCTATCCGCTCTCAACTTTCCAGGCATTTGCAANATGTTTAAGTAGCTTCGACACCNAAACTGGCCTGCGAATGAGGGAAACCAGTGAGCTCT AATGGAGGCAGAACTGGAAATGCNNACCACGAGAGCCAACCTTGAGAAATGTAATGCCC AGGGCTCTAGATCATGTTTGCACTTTTGTTGTGTCGTCCTTGCTGTATTTCTGCTTGTAGCCTGGAACCTGGATTTCTCACGCCTGTATGTNTTCACCTGGTAGCACCCATGATACGGTTTCCTTTGGGACACGCGGTTCACTGCATTGCATTTTTCCACTTTGTGTGGTGTACCACTGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATCCCNTGTTCTGGTAAAGAAAAGGGAAAGATTCAGTGCTTCGAAAAAAAAAA          ]
[-] EMBL CF325012             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCCGCTCTCAGCTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACA CAAAACTGGCCTGCGAATGAGGGAAA CAGTGAGCTCT AATGGAGGCAGAACTGGAAATGC  AACA GAGAG CAA CTTGAGAAATGTAATGCCCAAGGGCTCTAGATCATGTTTGCA TTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAA CTGGATTTCTCA GCCTGTATGT TTCACCTGGTAGCA CCATGATA GGTTTCCTTTGGGACA GCGGTTCA TGCATTGCATTTTTCCA TTTGTGTGGTGTA CA TGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTTCTGGTAAAGAAAAGGGAAAGATTCAGTGCTTCAAAAAAAAAAAAAAAAAACTC]
[+] EMBL AU031695             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCCGCTCTCAGCTTTCCAGGCACTTGCAATATGTTTAAGTNGCTTCGACA CAAAACTGGCCTGCGAATGAGGGAAA CAGTGAGCTCTAAATGGAGGCAGAACTGGAAATGC  AACN GAGAG CAA CTTGAGAAATGTAATGCCCAAGGGCTCTAGATCATGTTTGCA TTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAA CTGGATTTCTCA GCCTGTATGT TTCACCTGGTAGCA CCATGATA GGTTTCCTTTGGGACA GCGGTTCA TGCATTGCATTTTTCCA TTTGTGTGGTGTA CA TGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTTCTGGTAAAGAAAAGGGAAAGATTCNGTGCTTCAAAAAAAAAAAAAAnnn    ]
[-] EMBL CF277242             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTCA GCCTGTATGT TTCACCTGGTAGCA CCATGATA GGTTTCCTTTGGGACA GCGGTTCA TGCATTGCATTTTTCCA TTTGTGTGGTGTA CA TGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTTCTGGTAAAGAAAAGGGAAAGATTCAGTGCTTCAAAAAAA              ]


>consensus_12982#0 TTGGAAAACTAAGGTCAAACTTCCTTGGCACAAAATTTATAATCTATGACACACAGCCCT CTTATAATGGGGCTGTAATCCCTCCTGTTGGACGGAGCAGCCGAAGATTCAACTCCAAGA AAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTGACATATGAGCTTA ATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCATGCACTCCATACCTGCCT CCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATTGTTCCCCGAGCTT TCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATCATGGATCGGTCCA TGGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGACATTGCTGGAGGCA CCATAAATGGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTGCTTCGCAACAAGG CCCCTAGGTGGCATGAGCAGCTCCAATGCTGGTGCCTTAATTTCCGTGGGCGTGTAACCA TTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCAGGGGCTC CAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAAGATTATTCTACAGTTTGGTAAGG TAGCAAAAGATATGTTCACAATGGATTACCGCTATCCGCTCTCAGCTTTCCAGGCATTTG CAATATGTTTAAGTAGCTTCGACACAAAACTGGCCTGCGAATGAGGGAAACAGTGAGCTC TAATGGAGGCAGAACTGGAAATGCAACAGAGAGCAACTTGAGAAATGTAATGCCCAAGGG CTCTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGG AACTGGATTTCTCAGCCTGTATGTTTCACCTGGTAGCACCATGATAGGTTTCCTTTGGGA CAGCGGTTCATGCATTGCATTTTTCCATTTGTGTGGTGTACATGCGGTTCCGGATTTAAG CTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTTCTGGTAAAGA AAAGGGAAAGATTCAGTGCTTCAAAAAAAAAAAAAAAAAACTC



consensusID : consensus_12982#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1010
fasta sequence
                              [TTCAACTCCAAGAAAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTGACATATGAGCTTAATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCGTGCACTCCATACCTGCCTCCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATTGTTCCCCGAGCTTTCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATCATGGATCGGTCCATGGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGACATTGCTGGAGGCACCATAAATGGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTGCTTCGCAACAAGGCCCCTAGGTGGCATGAGCAGCTCCAATGCTGGTGCCTTAATTTCCGTGGGCGTGTAACCATTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCAGGGGCTCCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAAGATTATTCTACAGTTTGGTAAGGTAGCAAAAGATATGTTCACAATGGATTACCGCTATCCGCTCTCAGCTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACACAAAACTGGCCTGCGAATGAGGGAAACAGTGAGCTCTAATGGAGGCAGAACTGGAAATGCAACAGGGAGCAACTTGAGAAATGTAATGCCCAAGGGCTCTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAACTGGATTTCTCAGCCTGTATGTTTCACCTGGTAGCACCATGATAGGTTTCCTTTGGGACAGCGGTTCATGCATTGCATTTTTCCATTTGTGTGGTGTACATGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTTCTGGTAAAGAAAAGGGAAAGATTCAGTGCTTCACTTATTTTGTGCCC]

[+] EMBL AK059586             [TTCAACTCCAAGAAAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTGACATATGAGCTTAATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCGTGCACTCCATACCTGCCTCCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATTGTTCCCCGAGCTTTCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATCATGGATCGGTCCATGGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGACATTGCTGGAGGCACCATAAATGGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTGCTTCGCAACAAGGCCCCTAGGTGGCATGAGCAGCTCCAATGCTGGTGCCTTAATTTCCGTGGGCGTGTAACCATTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCAGGGGCTCCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAAGATTATTCTACAGTTTGGTAAGGTAGCAAAAGATATGTTCACAATGGATTACCGCTATCCGCTCTCAGCTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACACAAAACTGGCCTGCGAATGAGGGAAACAGTGAGCTCTAATGGAGGCAGAACTGGAAATGCAACAGGGAGCAACTTGAGAAATGTAATGCCCAAGGGCTCTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAACTGGATTTCTCAGCCTGTATGTTTCACCTGGTAGCACCATGATAGGTTTCCTTTGGGACAGCGGTTCATGCATTGCATTTTTCCATTTGTGTGGTGTACATGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTTCTGGTAAAGAAAAGGGAAAGATTCAGTGCTTCACTTATTTTGTGCCC]


>consensus_12982#1 TTCAACTCCAAGAAAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTG ACATATGAGCTTAATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCGTGCAC TCCATACCTGCCTCCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATT GTTCCCCGAGCTTTCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATC ATGGATCGGTCCATGGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGAC ATTGCTGGAGGCACCATAAATGGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTG CTTCGCAACAAGGCCCCTAGGTGGCATGAGCAGCTCCAATGCTGGTGCCTTAATTTCCGT GGGCGTGTAACCATTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCT CCCGCAGGGGCTCCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAAGATTATTCTA CAGTTTGGTAAGGTAGCAAAAGATATGTTCACAATGGATTACCGCTATCCGCTCTCAGCT TTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACACAAAACTGGCCTGCGAATGAGGG AAACAGTGAGCTCTAATGGAGGCAGAACTGGAAATGCAACAGGGAGCAACTTGAGAAATG TAATGCCCAAGGGCTCTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCT GCTTGTAGCCTGGAACTGGATTTCTCAGCCTGTATGTTTCACCTGGTAGCACCATGATAG GTTTCCTTTGGGACAGCGGTTCATGCATTGCATTTTTCCATTTGTGTGGTGTACATGCGG TTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGT GTTCTGGTAAAGAAAAGGGAAAGATTCAGTGCTTCACTTATTTTGTGCCC



consensusID : consensus_12982#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 468
fasta sequence
                              [TGAGCAGCGTCCAATGCTGGTNCCTTAATTTCCGTGGGCGTGTAACCACTTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCCACGGGGCTCCAA-CTCCGTCACAACCTGCTCCACCAGAGCAGGACCACAGATTATTCTACA-GTTTGGTAAGGTAGCACAAAGATATGTTCA-CA-ATGGATTACCGCCTATCCGCTCTCAACTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACACNAAATCTGGCCTGCGAATAGAGGGAAACAGTGAGCTCTAATGGAGGCAGAACTGGAAATGCAACA-GAGAGCAACTTGAGAAATGTAATGCCCCAGGGCTNTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAACTGGATTTTTCAGCCTGTATGTTTCACCTGGTAGCACCCAAAAAAAAAA]

[+] EMBL BQ908991             [TGAGCAGCGTCCAATGCTGGTNCCTTAATTTCCGTGGGCGTGTAACCACTTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCCACGGGGCTCCAA CTCCGTCACAACCTGCTCCACCAGAGCAGGACCACAGATTATTCTACA GTTTGGTAAGGTAGCACAAAGATATGTTCA CA ATGGATTACCGCCTATCCGCTCTCAACTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACACNAAATCTGGCCTGCGAATAGAGGGAAACAGTGAGCTCTAATGGAGGCAGAACTGGAAATGCAACA GAGAGCAACTTGAGAAATGTAATGCCCCAGGGCTNTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAACTGGATTTTTCAGCCTGTATGTTTCACCTGGTAGCACCCAAAAAAAAAA]
[+] EMBL BQ908236             [                 ggtgcCCTTAATTTCCGTGGGCGTGTAACCACTTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCG CA GGGGCTCCAATCTCCGTCACAACCTGNTCCACCAGAGCAGGA CA AGATTATTCTACACGTTTGGTAAGGTAGCACAAAGATATGTTCACCANATGGATTACCG CTATCCGCTCTCAACTTTCCAGGCATTTGCAATATGTTTAAGTAGCTTCGACACCAAA CTGGCCTGCGAAT GAGGGAAACAGTGAGCTCTAATGGAGGCAGAACTGGAAATGCAACACGAGAGCAACTTGAGAAATGTAATG CCCAGGGCTCTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAACTGGATTTCTCAGCCTGTATGTTTCACCTGGTAGCNCCCAAAAAAAAAA]


>consensus_12982#2 TGAGCAGCGTCCAATGCTGGTNCCTTAATTTCCGTGGGCGTGTAACCACTTGCGTCGGTA AAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCCACGGGGCTCCAACTCCGT CACAACCTGCTCCACCAGAGCAGGACCACAGATTATTCTACAGTTTGGTAAGGTAGCACA AAGATATGTTCACAATGGATTACCGCCTATCCGCTCTCAACTTTCCAGGCATTTGCAATA TGTTTAAGTAGCTTCGACACNAAATCTGGCCTGCGAATAGAGGGAAACAGTGAGCTCTAA TGGAGGCAGAACTGGAAATGCAACAGAGAGCAACTTGAGAAATGTAATGCCCCAGGGCTN TAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTTGTAGCCTGGAAC TGGATTTTTCAGCCTGTATGTTTCACCTGGTAGCACCCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12982#0      TTGGAAAACTAAGGTCAAACTTCCTTGGCACAAAATTTATAATCTATGACACACAGCCCT 60
consensus_12982#1      ------------------------------------------------------------
consensus_12982#2      ------------------------------------------------------------
                                                                                   

consensus_12982#0      CTTATAATGGGGCTGTAATCCCTCCTGTTGGACGGAGCAGCCGAAGATTCAACTCCAAGA 120
consensus_12982#1      -----------------------------------------------TTCAACTCCAAGA 13
consensus_12982#2      ------------------------------------------------------------
                                                                                   

consensus_12982#0      AAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTGACATATGAGCTTA 180
consensus_12982#1      AAGTGTCTCCTAAGATGCCGTCTGGTAGTTATAACATAGCTCAGGTGACATATGAGCTTA 73
consensus_12982#2      ------------------------------------------------------------
                                                                                   

consensus_12982#0      ATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCATGCACTCCATACCTGCCT 240
consensus_12982#1      ATGTTCTTGGCACCAGGGGCCCTAGGCGGATGCACTGTGTCGTGCACTCCATACCTGCCT 133
consensus_12982#2      ------------------------------------------------------------
                                                                                   

consensus_12982#0      CCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATTGTTCCCCGAGCTT 300
consensus_12982#1      CCTCAGTCGAGCCTGGTGGCATTGTCCCTGGCCAGCCCGAGCAGATTGTTCCCCGAGCTT 193
consensus_12982#2      ------------------------------------------------------------
                                                                                   

consensus_12982#0      TCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATCATGGATCGGTCCA 360
consensus_12982#1      TCGAGGAGTCATTTCGCAGCACCACCTCCTTTTCTAAGTCATCCATCATGGATCGGTCCA 253
consensus_12982#2      ------------------------------------------------------------
                                                                                   

consensus_12982#0      TGGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGACATTGCTGGAGGCA 420
consensus_12982#1      TGGATTTCAGTAGTTCCCGTGATTTCAGCAGTGCTCGCTTTTCAGACATTGCTGGAGGCA 313
consensus_12982#2      ------------------------------------------------------------
                                                                                   

consensus_12982#0      CCATAAATGGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTGCTTCGCAACAAGG 480
consensus_12982#1      CCATAAATGGTGATGAAGAGGGGCAAAATAAGGAGAGGCCACTAGTGCTTCGCAACAAGG 373
consensus_12982#2      ------------------------------------------------------------
                                                                                   

consensus_12982#0      CCCCTAGGTGGCATGAGCAGC-TCCAATGCTGGTGCCTTAATTTCCGTGGGCGTGTAACC 539
consensus_12982#1      CCCCTAGGTGGCATGAGCAGC-TCCAATGCTGGTGCCTTAATTTCCGTGGGCGTGTAACC 432
consensus_12982#2      -------------TGAGCAGCGTCCAATGCTGGTNCCTTAATTTCCGTGGGCGTGTAACC 47
                                    ******** ************ *************************

consensus_12982#0      A-TTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCA--GGG 596
consensus_12982#1      A-TTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCA--GGG 489
consensus_12982#2      ACTTGCGTCGGTAAAGAATTTCCAGTTGATTGCTGCACCAGCACAGCCTCCCGCCACGGG 107
                       * ****************************************************   ***

consensus_12982#0      GCTCCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAA--GATTATTCTACAGTTTG 654
consensus_12982#1      GCTCCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACAA--GATTATTCTACAGTTTG 547
consensus_12982#2      GCTCCAACTCCGTCACAACCTGCTCCACCAGAGCAGGACCACAGATTATTCTACAGTTTG 167
                       *************************************** *  *****************

consensus_12982#0      GTAAGGTAGCA-AAAGATATGTTCACAATGGATTACCGC-TATCCGCTCTCAGCTTTCCA 712
consensus_12982#1      GTAAGGTAGCA-AAAGATATGTTCACAATGGATTACCGC-TATCCGCTCTCAGCTTTCCA 605
consensus_12982#2      GTAAGGTAGCACAAAGATATGTTCACAATGGATTACCGCCTATCCGCTCTCAACTTTCCA 227
                       *********** *************************** ************ *******

consensus_12982#0      GGCATTTGCAATATGTTTAAGTAGCTTCGACACAAAA-CTGGCCTGCGAAT-GAGGGAAA 770
consensus_12982#1      GGCATTTGCAATATGTTTAAGTAGCTTCGACACAAAA-CTGGCCTGCGAAT-GAGGGAAA 663
consensus_12982#2      GGCATTTGCAATATGTTTAAGTAGCTTCGACACNAAATCTGGCCTGCGAATAGAGGGAAA 287
                       ********************************* *** ************* ********

consensus_12982#0      CAGTGAGCTCTAATGGAGGCAGAACTGGAAATGCAACAGAGAGCAACTTGAGAAATGTAA 830
consensus_12982#1      CAGTGAGCTCTAATGGAGGCAGAACTGGAAATGCAACAGGGAGCAACTTGAGAAATGTAA 723
consensus_12982#2      CAGTGAGCTCTAATGGAGGCAGAACTGGAAATGCAACAGAGAGCAACTTGAGAAATGTAA 347
                       *************************************** ********************

consensus_12982#0      TGCCCAAGGGCTCTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCT 890
consensus_12982#1      TGCCCAAGGGCTCTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCT 783
consensus_12982#2      TGCCCCAGGGCTNTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCT 407
                       ***** ****** ***********************************************

consensus_12982#0      TGTAGCCTGGAACTGGATTTCTCAGCCTGTATGTTTCACCTGGTAGCACCATGATAGGTT 950
consensus_12982#1      TGTAGCCTGGAACTGGATTTCTCAGCCTGTATGTTTCACCTGGTAGCACCATGATAGGTT 843
consensus_12982#2      TGTAGCCTGGAACTGGATTTTTCAGCCTGTATGTTTCACCTGGTAGCACCCAAAAAAAAA 467
                       ******************** *****************************   * *    

consensus_12982#0      TCCTTTGGGACAGCGGTTCATGCATTGCATTTTTCCATTTGTGTGGTGTACATGCGGTTC 1010
consensus_12982#1      TCCTTTGGGACAGCGGTTCATGCATTGCATTTTTCCATTTGTGTGGTGTACATGCGGTTC 903
consensus_12982#2      A----------------------------------------------------------- 468
                                                                                   

consensus_12982#0      CGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTT 1070
consensus_12982#1      CGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGCTTTGCATGGATGCCGTGTT 963
consensus_12982#2      ------------------------------------------------------------
                                                                                   

consensus_12982#0      CTGGTAAAGAAAAGGGAAAGATTCAGTGCTTCAAAAAAAAAAAAAAAAAACTC 1123
consensus_12982#1      CTGGTAAAGAAAAGGGAAAGATTCAGTGCTTCACTTATTTTGTGCCC------ 1010
consensus_12982#2      -----------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)