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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 930 fasta sequence
[CATGGACTGACGGAGTAGAAATCTCACACACAGCAGGAGAAACCAACTCATAGTAGCTTAGCTAATTAACACGATGGCCTCCTCTTCTTCCTTGTATCTCCTAGCTGCTCTGCTTGCGCTGGCCTCATGGCAGGCCATTGCTTTTGATCCTAGCCCACTCCAAGATTTTTGTGTTGCTGACATGAAATCACCTGTGAGGGTAAATGGATTCCCTTGCAAGA-ACCCAATGGAGGTGAACTCGGA-CGACTTTTTCAA-CGCGGC-CAAGTTTGACATGCC-TAGGAGTACCATGAACAAGGTTGGATCCAACGTC-ACCAACCTCAACGTTCTAAATTTCCCGGGGCTCAACACCCTCGGCATCTCGCTGGCCCGCATCGACTATGCG-CCTTTA-GGTGTGAACCCACCACACATTCACCCACGTGCTACCGAGCTCCTCACTGTGCTTGAGGGAACACTCTATGTTGGCTTTGTCACGTCTAACCCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCAATGATCCACTTCCAAATGAATTTAGACCACAATAAACCAGCAGTTGCCCAGTCATCACTCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCACCAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGCTCAAATCTCAGTTCTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAATTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGGCTTTTGTCCTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAATAAATGTTATTCAATGGAAAAAAAAAAAAAAAAA]
[+] EMBL CF312040 [CATGGACTGACGGAGTAGAAATCTCACACACAGCAGGAGAAACCAACTCATAGTAGCTTAGCTAATTAACACGATGGCCTCCTCTTCTTCCTTGTATCTCCTAGCTGCTCTGCTTGCGCTGGCCTCATGGCAGGCCATTGCTTTTGATCCTAGCCCACTCCAAGATTTTTGTGTTGCTGACATGAAATCACCTGTGAGGGTAAATGGATTCCCTTGCAAGA ACCCAATGGAGGTGAACTCGGA CGACTTTTTCAA CGCGGC CAAGTTTGACATGCC TAGGAGTACCATGAACAAGGTTGGATCCAACGTC ACCAACCTCAACGTTCTAAATTTCCCGGGGCTCAACACCCTCGGCATCTCGCTGGCCCGCATCGACTATGCG CCTTTA GGTGTGAACCCACCACACATTCACCCACGTGCTACCGAGCTCCTCACTGTGCTTGAGGGAACACTCTATGTTGGCTTTGTCACGTCTAACCCAAACAG ]
[+] EMBL CF312087 [ TCACACACAGCAGGAGAAACCAACTCATAGTAGCTTAGCTAATTAACACGATGGCCTCCTCTTCTTCCTTGTATCTCCTAGCTGCTCTGCTTGCGCTGGCCTCATGGCAGGCCATTGCTTTTGATCCTAGCCCACTCCAAGATTTTTGTGTTGCTGACATGAAATCACCTGTGAGGGTAAATGGATTCCCTTGCAAGA ACCCAATGGAGGTGAACTCGGA CGACTTTTTCAA CGCGGC CAAGTTTGACATGCC TAGGAGTACCATGAACAAGGTTGGATCCAACGTC ACCAACCTCAACGTTCTAAATTTCCCGGGGCTCAACACCCTCGGCATCTCGCTGGCCCGCATCGACTATGCG CCTTTA GGTGTGAACCCACCACACATTCACCCACGTGCTACCGAGCTCCTCACTGTGCTTGAGGGAACACT ]
[+] EMBL AK059338 [ ACAGCAGGAGAAACCAACTCATAGTAGCTTAGCTAATTAACACGATGGCCTCCTCTTCTTCCTTGTATCTCCTAGCTGCTCTGCTTGCGCTGGCCTCATGGCAGGCCATTGCTTTTGATCCTAGCCCACTCCAAGATTTTTGTGTTGCTGACATGAAATCACCTGTGAGGGTAAATGGATTCCCTTGCAAGA ACCCAATGGAGGTGAACTCGGA CGACTTTTTCAA CGCGGC CAAGTTTGACATGCC TAGGAGTACCATGAACAAGGTTGGATCCAACGTC ACCAACCTCAACGTTCTAAATTTCCCGGGGCTCAACACCCTCGGCATCTCGCTGGCCCGCATCGACTATGCG CCTTTA GGTGTGAACCCACCACACATTCACCCACGTGCTACCGAGCTCCTCACTGTGCTTGAGGGAACACTCTATGTTGGCTTTGTCACGTCTAACCCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCAATGATCCACTTCCAAATGAATTTAGACCACAATAAACCAGCAGTTGCCCAGTCATCACTCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCACCAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGCTCAAATCTCAGTTCTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAATTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGGCTTTTGTCCTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAATAAATGT ]
[+] EMBL OSS4853A [ AACTCATAGTAGCTTAGCTAATTAACACGATGGCCTCCTCTTCTTCCTTGTATCTCCTAGCTGCTCTGCTTGCGCTGGCCTCATGGCAGGCCATTGCTTTTGATCCTAGCCCACTCCAAGATTTTNGTGTTGCTGACATGAAATCACCTGTGAGGGTAAATGGATTCCCTTGCAAGA ACCCAATGGAGGTGAACTCGGA CGACTTTTTCAA CGCGGC CAAGTTTGACATGCC TAGGAGTACCATGAACAAGGTTGGATCC ACGTC ACCAACCTC ACGTTCTAAATTTCCCGGGGCTTAACA CCTCGGCATCTCGCTGGNCCGNATCG CTATGCG CTTTAGGGTGT ]
[+] EMBL CA755895 [ ACTCATAGTAGCTTAGCTAATTAACACGATGGCCTCCTCTTCTTCCTTGTATCTCCTAGCTGCTCTGCTTGCGCTGGCCTCATGGCAGGCCATTGCTTTTGATCCTAGCCCACTCCAAGATTTTTGTGTTGCTGACATGAAATCACCTGTGAGGGTAAATGGATTCCCTTGCAAGA ACCCAATGGAGGTGAACTCGGA CGACTTTTTCAA CGCGGC CAAGTTTGACATGCC TAGGAGTACCATGAACAAGGTTGGATCCAACGTC ACCAACCTCAACGTTCTAAATTTCCCGGGGCTCAACACCCTCGGCATCTCGCTGGCCCGCATCGACTATGCG CCTTTA GGTGTGAACCCACCACACATTCACCCACGTGCTACCGAGCTCCTCACTGTGCTTGAGGGAACACTCTATGTTGGCTTTGTCACGTCTAACCCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCAATGATCCACTTCCAAATGAATTTAGACCACAATAAACCAGCAGTTGCCCAGTCATCACTCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCCCCAATCTTTGATGATGTTTTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGCTCAAATTTCAGTTTTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAATTGATGCAAGTTTGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGGCTTTTGTTTTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAATAAATGTTATTCAATGGAAAAAAAAAAAAAAAAA]
[+] EMBL OSS2819A [ GCTTAGCTAATTAACACGATGGCCTCCTCTTCTTCCTTGTATCTCCTAGCTGCTCTGCTTGCGCTGGCCTCATGGCAGGCCATTGCTTTTGATCCTAGCCCACTCCAAGATTTTTGTGTTGCTGACATGAAATCACCTGTGAGGGTAAATGGATTCCCTTGCAAGA ACCCAATGGAGGTGAACTCGGA CGACTTTTTCAA CGCGGC CAAGTTTGACATGCC TAGGAGTACCATGAACAAGGTTGGATCCAACGTC ACCAACCTCAACGTTCTAAATTTCCCGGGGCTCAACACCCTCGGCATCTCGCTGGCCCGCATCGACTATGCG CCTTTA GGTGTNAACCCACCACACATTCACCCACGTG ]
[+] EMBL AF032971 [ GCTTAGCTAATTAACACGATGGCCTCCTCTTCTTCCTTGTATCTCCTAGCTGCTCTGCTTGCGCTGGCCTCATGGCAGGCCATTGCTTTTGATCCTAGCCCACTCCAAGATTTTTGTGTTGCTGACATGAAATCACCTGTGAGGGTAAATGGATTCCCTTGCAAGA ACCCAATGGAGGTGAACTCGGA CGACTTTTTCAA CGCGGC CAAGTTTGACATGCC TAGGAGTACCATGAACAAGGTTGGATCCAACGTC ACCAACCTCAACGTTCTAAATTTCCCGGGGCTCAACACCCTCGGCATCTCGCTGGCCCGCATCGACTATGCG CCTTTA GGTGTGAACCCACCACACATTCACCCACGTGCTACCGAGCTCCTCACTGTGCTTGAGGGAACACTCTATGTTGGCTTTGTCACGTCTAACCCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCAATGATCCACTTCCAAATGAATTTAGACCACAATAAACCAGCAGTTGCCCAGTCATCACTCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCACCAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGCTCAAATCTCAGTTTTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAATTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGGCTTTTGTCCTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAATAAATGTTA ]
[+] EMBL AU102006 [ AAGACCCCCAATGGAGGTGAACTCGGACCGACTTTTTCAACCGCGGCAAAAGTTTGACATGCCTTAGGAGTACCATGAACAAGGTTGGATCCAACGTCAACCAACCTCAACGTNCTAAATTTCCCGGGGNTCAACACCCTCGGCATNTCGCTGGCCCGCATCGACTATGCGCCCTTTA GGTGTGAACCCACCACACATTCACCCACGTGCTACCGAGCTCCTCACTGTGCTTGAGGGAACACTCTATGTTGGCTTTGTCACGTCTAACCCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCAATGATCCACTTCCAAATGAATTTAGNCCACAATAANCCAGCAGTTGCCCAGTCATCACTCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCACCAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGCTCAAATCTCAGTTCTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAATTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGGCTTTTGTCCTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAAAAAAaa ]
[+] EMBL OSC0671 [ GCATCGACTATGCG TCTTTA GGTGTGAACCCACCACACATTCACCCACGTGCTACCGAGCTCCTCACTGTGCTTGAGGGAACACTCTATGTTGGCTTTGTNACGTCTAACCCAAACAGGCTCTTCTCTAAGGNGGTTCATAAGGGTNACACATTTGTNTTTCCTAAGGCAATGNTCCACTTCCAAATGANTTTAGACCACANTAAACCAGCAGTTGCCCAGTNATCACTCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTG ]
consensusID : consensus_12984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 517 fasta sequence
[GTGTACCGAGCTCCTCACTGTGCTTGAGGGAACACTCNTATGTTGGCTTTGTCACGTCTAAACCCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCAATGATCCACTTCCAAAATGAATTTAGACCACACATAAACCAGCAGTTGCCCAGTCATCACTCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCACCAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGCTCAAATCTCAGTTCTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAATTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGGCTTTTGTCCTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAATAAATGTTATACAATGGAAAAAGTGCCCAAAAAA]
[-] EMBL CF312088 [GTGTACCGAGCTCCTCACTGTGCTTGAGGGAACACTCNTATGTTGGCTTTGTCACGTCTAAACCCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCAATGATCCACTTCC AAATGAATTTAGACCACACATAAACCAGCAGTTGCCCAGTCATCACTCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCACCAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGCTCAAATCTCAGTTCTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAATTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGGCTTTTGTCCTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAATAAATGTTATACAATGGAAAAA ]
[-] EMBL CF312041 [ TACCGAGCTCCTCACTGTGCTTGAGGGAACACTC TATGTTGGCTTTGTCACGTCTAAACCCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCAATGATCCACTTCCAAAATGAATTTAGACCACATATAAACCAGCAGTTGCCCAGTCATCACTCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCACCAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGCTCAAATCTCAGTTCTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAATTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGGCTTTTGTCCTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAATAAATGTTATACAATGGAAGTGGTGCCCAAAAAA]
[-] EMBL CF311796 [ GTCACGTCTAAACCCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCAATGATCCACTTTCCAAATGAATTTAGACCACACATAAACCAGCAGTTGCCCAGTCATCACTCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCACCAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGCTCAAATCTCAGTTCTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAATTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGGCTTTTGTCCTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAATAAATGTTATACAATGGAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12984#0 CATGGACTGACGGAGTAGAAATCTCACACACAGCAGGAGAAACCAACTCATAGTAGCTTA 60
consensus_12984#1 ------------------------------------------------------------
consensus_12984#0 GCTAATTAACACGATGGCCTCCTCTTCTTCCTTGTATCTCCTAGCTGCTCTGCTTGCGCT 120
consensus_12984#1 ------------------------------------------------------------
consensus_12984#0 GGCCTCATGGCAGGCCATTGCTTTTGATCCTAGCCCACTCCAAGATTTTTGTGTTGCTGA 180
consensus_12984#1 ------------------------------------------------------------
consensus_12984#0 CATGAAATCACCTGTGAGGGTAAATGGATTCCCTTGCAAGAACCCAATGGAGGTGAACTC 240
consensus_12984#1 ------------------------------------------------------------
consensus_12984#0 GGACGACTTTTTCAACGCGGCCAAGTTTGACATGCCTAGGAGTACCATGAACAAGGTTGG 300
consensus_12984#1 ------------------------------------------------------------
consensus_12984#0 ATCCAACGTCACCAACCTCAACGTTCTAAATTTCCCGGGGCTCAACACCCTCGGCATCTC 360
consensus_12984#1 ------------------------------------------------------------
consensus_12984#0 GCTGGCCCGCATCGACTATGCGCCTTTAGGTGTGAACCCACCACACATTCACCCACGTGC 420
consensus_12984#1 --------------------------------------------------------GTG- 3
***
consensus_12984#0 TACCGAGCTCCTCACTGTGCTTGAGGGAACACTCT-ATGTTGGCTTTGTCACGTCTAA-C 478
consensus_12984#1 TACCGAGCTCCTCACTGTGCTTGAGGGAACACTCNTATGTTGGCTTTGTCACGTCTAAAC 63
********************************** ********************** *
consensus_12984#0 CCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCA 538
consensus_12984#1 CCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAGGCA 123
************************************************************
consensus_12984#0 ATGATCCACTTCCAAA-TGAATTTAGACCACA-ATAAACCAGCAGTTGCCCAGTCATCAC 596
consensus_12984#1 ATGATCCACTTCCAAAATGAATTTAGACCACACATAAACCAGCAGTTGCCCAGTCATCAC 183
**************** *************** ***************************
consensus_12984#0 TCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCAC 656
consensus_12984#1 TCAACAGTCAAAACCCTGGAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCAC 243
************************************************************
consensus_12984#0 CAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGC 716
consensus_12984#1 CAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTGGAAAAGAAGGTGATTGATTGGC 303
************************************************************
consensus_12984#0 TCAAATCTCAGTTCTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAA 776
consensus_12984#1 TCAAATCTCAGTTCTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATCAA 363
************************************************************
consensus_12984#0 TTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGG 836
consensus_12984#1 TTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGG 423
************************************************************
consensus_12984#0 CTTTTGTCCTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAA 896
consensus_12984#1 CTTTTGTCCTATCAAAAATGTCATAATATGTTGTACGTGTGCTTTCTTGCTCATGTTTAA 483
************************************************************
consensus_12984#0 TAAATGTTATTCAATGGAAAAAAAAAAAAAAAAA 930
consensus_12984#1 TAAATGTTATACAATGGAAAAAGTGCCCAAAAAA 517
********** *********** ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||