|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1203 fasta sequence
[ATTAATCAGTTAAGCAACACTTCGATTCCTCGCCGCCGTTNCCGCCGCCGCCGACCGGAAAGATGCCGGGAGCCGTGAAGGTGTTCGGGTCGCCGTCGTCGGCCGAGGTGGCCCGCGTGCTGGCTTGCCTGTTCGAGAAGGACGTCGAGTTCCAGCTCATCCGCGTCGACTCCTTTCGCGGGTCCAAACGCATGCCCCAGTATCTNAAACTCCAGCCTCACGGCGAGGCTCTCACCTTCGAGGACGGCAATNTNACGCTCGTCGAGTCGAGGAAGATCATAAGGCACATTGCGGACAAGTACAAGAACCAGGGGAACCGGGACCTGATCGGGATGGGGGCGTTGGAGAGGTCGTCGATCGAGCAGTGGCTGCAGACGGAGGCGCAGAGCTTCGACGTGCCCAGCGCCGACGTGGTCTACAGCCTCGCCTACCTGCCGGCGGCGACGACGCAGCCTAACAAGGGCGCCGCCGCCGCCGACGGTGGCCGCTGCGAGGAGGAGAAGAACGACGACGGCGGCCGTGACCGGCAGTACAGCAGCCAGAGGCAGGGCGGCGCCGGCGCCGGAGGAGGAAGGGATGGCCAGATGGCGGCGGCGCACCGGCAGAAGGTGGAGGAGATGAAGCAGCTGTTCGAGAAGAGCAGCAAGGAGCTGAGCAAGGTGCTGGACATCTACGAGCAGCGGCTGGAGGAGGCGGAGTACCTCGCCGGCGACAAGTTCACCCTCGCCGACCTTTCGCACCTCCCCAACGCCGACCGCCTCGCCGCCGACCCGCGCACGCTCCGGATGCTGCAGTCCCGCCGCAACGTCAGCCGGTGGTGGGCCGACGTCTCCGGCCGCGAGTCGTGGAAGCAGGTCAAGAGCCTCAACCGCCCGCCCTCCGCCGAGGCTCCCTTCTGATGATGAGGTCAGCCACCGTGCTCTT-CCGGCCGCCGGCGGCGGCGGC-GGCGGCCGGCG-AGAGGAGGAGGAGGAGGAGAAGGGGGTCGCTTTGCTTTATGATTCGTGCTGCGTACACATTTTCCAATGTCGTCGTCGTCGTCGTCAATAACCGGACACGTACGTTCGTGTTCGCGCCATATATATCCTGCTGCTGTTGGTGAATTCCGAGTGGTCACATTATTATATTATATAACTGTCAGTCTTGTAACAAGTTCAATAAAATGCTTGCCCCTTTGTCGTGAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSS13415A [ATTAATCAGTTAAGCAACACTTCGATTCCTCGCCGCCGTTNCCGCCGCCGCCGACCGGAAANATGCCGGGAGCCGTGAAGGTGTTCGGNTCGCCGTCGTCGGCCGAGGTGGCCCGTGTGCTGGCTTGCCTGTTCGANAAGGACGTCGAGTTCCAGCTCATCCGCGTCGACTCCTTTCGCGGGTCCAAACGCATGCCCCAGTATCTNAAACTCCAGCCTCACGGCGAGGCTCTCACCTTCGAGGACGGCAATNTNACGCTCGTCGAGTCGAGGAAGATCATAAGGCACATTGCGGACAAGTACAAGAACCAGGGGAACCGG ]
[+] EMBL AB103350 [ AAAGATGCCGGGAGCCGTGAAGGTGTTCGGGTCGCCGTCGTCGGCCGAGGTGGCCCGCGTGCTGGCTTGCCTGTTCGAGAAGGACGTCGAGTTCCAGCTCATCCGCGTCGACTCCTTTCGCGGGTCCAAACGCATGCCCCAGTATCTCAAACTCCAGCCTCACGGCGAGGCTCTCACCTTCGAGGACGGCAATGTGACGCTCGTCGAGTCGAGGAAGATCATAAGGCACATTGCGGACAAGTACAAGAACCAGGGGAACCCGGACCTGATCGGGATGGGGGCGTTGGAGAGGTCGTCGATCGAGCAGTGGCTGCAGACGGAGGCGCAGAGCTTCGACGTGCCCAGCGCCGACGTGGTCTACAGCCTCGCCTACCTGCCGGCGGCGACGACGCAGCCTAACAAGGGCGCCGCCGCCGCCGACGGTGGCCGCTGCGAGGAGGAGAAGAACGACGACGGCGGCCGTGACCGGCAGTACAGCAGCCAGAGGCAGGGCGGCGCCGGCGCCGGAGGAGGAAGGGATGGCCAGATGGCGGCGGCGCACCGGCAGAAGGTGGAGGAGATGAAGCAGCTGTTCGAGAAGAGCAGCAAGGAGCTGAGCAAGGTGCTGGACATCTACGAGCAGCGGCTGGAGGAGGCGGAGTACCTCGCCGGCGACAAGTTCACCCTCGCCGACCTTTCGCACCTCCCCAACGCCGACCGCCTCGCCGCCGACCCGCGCACGCTCCGGATGCTGCAGTCCCGCCGCAACGTCAGCCGGTGGTGGGCCGACGTCTCCGGCCGCGAGTCGTGGAAGCAGGTCAAGAGCCTCAACCGCCCGCCCTCCGCCGAGGCTCCCTTCTGATGATGAGGTCAGCCACCGTGCTCTT CCGGCCGCCGGCGGCGGCGGC GGCGGCCGGCG AGAGGAGGAGGAGGAGGAGAAGGGGGTCGCTTTGCTTTATGATTCGTGCTGCGTACACATTTTCCAATGTCGTCGTCGTCGTCGTCAATAACCGGACACGTACGTTCGTGTTCGCGCCATATATATCCTGCTGCTGTTGGTGAATTCCGAGTGGTCACATTATTATATTATATAACTGTCAGTCTTGTAACAAGTTCAATAAAATGCTTGCCCCTTTGTCGTGAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSR20871A [ AAAGATGCCGGGAGCCGTGAAGGTGTTCGGGTCGCCGTCGTCGGCCGAGGTGGCCCGCGTNCTGGCTTGCCTGTTCGAGAAGGACGTCGAGTTCCAGCTCATCCGCGTCGACTCCTTTCGCGGGTCCAAACGCATGCCCCAGTAT ]
[+] EMBL C74282 [ GCTGAGCAAGGTGCTGGACATCTACGAGCAGCGGCTGGAGGAGGCGGAGTACCTCGCCGGCGACAAGTTCACCCTCGCCGACCTTTCGCACCTCCCCAACGCCGACCGCCTCGCCGCCGACCCGCGCACGCTCCGGATGCTGCAGTNCCGCCGCAACGTCAGCCGGTGGTGGGCCGACGTCTCCGGCCGCGAGTNGTGGAAGCAGGTCAAGAGCCTCAACCGCCCGCCCTCCGCCGAGGCTCCCTTCTGATGATGAGGTCAG CAACGTGCTCTT CCGGCCGCC GCNG GGGGGCGGGCGGCCGGCGAAAAGGAGGAGGA GANGAAAAGGGGGTC CTTT CTTAAT ATTCGTGCTGg ]
[+] EMBL AU082410 [ CTGAGCAAGGTGCTGGACATCTACGAGCAGCGGCTGAAGGAGNCGGAGTACCTCGCCGGCGACAAGTTCACCCTCGCCGACCTTTCGCACCTCCCCAACGCCGACCGCCTCGCCGCCGACCCGCGCACGCTCCGGATGCTGCAGTCCCGCCGCAACGTCAGCCGGTGGTGGGCCGACGTCTCCGGCCGCGAGTCGTGGAAGCAGGTCAAGAGCCTCAACCGCCCGCCCTCCGCCGAGGCTCCCTTCTGATGATGAGGTCAGCCACCGTGCTCTT CCGGCCGCCGGCGGCGGCGGC GGCGGCCGGCG AGAGGAGGAGGAGGAGGAGAAGGGGGTCGCTTTGCTTTATGATTCGTGCTGCGTACACATTTTCCAATGTCGTCGTCGTCGTCGTCAATAACCGGACACGTACGTTCGTGTTCGCGCCATATATATCCTGCTGCTGTTGGTGAATTCCGAGTGGTCACATTATTATATTATATAACTGTCAGTCTTGTAACAAGTTCAATAAAATGCTTGCCCCTTTGTCGTGATAAAAA ]
[+] EMBL AU082434 [ CGTGGAAGCAGGTCAAGAGCTTNAACCGCCCGCCCTCCGCCGAGGCTCCCTTCTGATGATGAGGTCAGCCACCGTGCTCTTNCCTGGCGCCGGCGGCGGCGGC GGCGGCCGGCG AGAGGAGGAGGAGGAGGAGAAGGGGGTCGCTTTGCTTTATGATTCGTGCTGCGTACACATTTTCCAATGTCGTCGTCGTCGTCGTCAATAACCGGACACGTACGTTCGTGTTCGCGCCATATATATCCTGCTGCTGTTGGTGAATTCCGAGTGGTCACATTATTATATTATATAACTGTCAGTCTTGTAACAAGTTCAATAAAATGCTTGCCCCTTTGTCGTGATAAAAAA ]
[-] EMBL CF298409 [ TTATATAACTGTCAGTCTTGTAACAAGTTCAATAAAATGCTTGCCCCTTTGTCGTGAAAAAAAAAA ]
[+] EMBL CF298410 [ CTGTCAGTCTTGTCACAAGTTCAATAAAATGCTTGCCCCTTTGTCGTGAAAAAAAAA ]
consensusID : consensus_12986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 905 fasta sequence
[CACACCACCATCTGCATAATACTTCCTTCTCAAATCCCAACCAACAGTTGCAGTAGAGTCACTAGCCGCCCACTGCAACTGAAATGGCGCCGGCGAGCGTGAAGGTTTTCGGGTCACCCACCTCGGCGGAGGTTGCCCGCGTGCTCATGTGCCTCTTCGAGAAGGACGTCGAGTTCCAGCTCGTCCGTGTCGACGCGTACCGCGGCACGCAGCGCATGCCCCAATATCTCAAGCTTCAGCCGCTCGGCGAGGCGCTCACGTTCGAAGATGACAACCTCACCCTGTCCGAGTCGAGGGGGATCCTTCGCCACATAGCGCACAAGTACGCG-AGGCAGGGAAACCCGGACCTGATCGGCAC-GGGCGCGCTGGGAGCGC-CGTTCCATCGAGCAGT-GGCTGCAGAC-GGAGGCGCAG-AGC-TTC-GACGTGCCCAGCGCCGAG-ATGGTCTACAGCCTCGCCTTCCTGCCGCCCAACATGCCCAAGCAGAACGACAACGGGAACGGGAACGGCAACGGCTACGGCAACAGCAATGGCAGGGAGGTCCAGGTGGCGAACGCGTCGAGCAAGCGCGTGGTGGCCGGCGCGACGGACGGGAAGACGGCGGCGAGCGGCGCCAACGGCAACAAGCAGCAGCAGAAGGAGGAGGAGATGCGGAAGGTGTTCGAGAAGAGCAAGAAGGACCTGGAGAAGCTGCTGGACATCTACGAGCAGCGGCTGGAGGAGGCGGCGTACCTGGCCGGCGACAAGTTCACCATCGCCGACCTGTCCCACCTCCCCAACGCCGACCGCCTCGCCTCCGACCCGCGCTCCCGCCGCATGTTCGAGGCGCGCAAGAACGTGAGCAGGTGGTGGAACAACATCTCCAGCCGCGAGTCGTGGGAGTACGTCAAGAGCCTGCAGCGCCCGCCGTC]
[+] EMBL AK102889 [CACACCACCATCTGCATAATACTTCCTTCTCAAATCCCAACCAACAGTTGCAGTAGAGTCACTAGCCGCCCACTGCAACTGAAATGGCGCCGGCGAGCGTGAAGGTTTTCGGGTCACCCACCTCGGCGGAGGTTGCCCGCGTGCTCACGTGCCTCTTCGAGAAGGACGTCGAGTTCCAGCTCGTCCGTGTCGACGCGTACCGCGGCACGCAGCGCATGCCCCAATATCTCAAGCTTCAGCCGCTCGGCGAGGCGCTCACGTTCGAAGATGACAACCTCACCCTGTCCGAGTCGAGGGGGATCCTTCGCCACATAGCGCACAAGTACGCG AGGCAGGGAAACCCGGACCTGATCGGCAC GGGCGCGCT GGAGCGCGCG TCCATCGAGCAGT GGCTGCAGAC GGAGGCGCAG AGC TTC GACGTGCCCAGCGCCGAG ATGGTCTACAGCCTCGCCTTCCTGCCGCCCAACATGCCCAAGCAGAACGACAACGGGAACGGGAACGGCAACGGCTACGGCAACAGCAATGGCAGGGAGGTCCAGGTGGCGAACGCGTCGAGCAAGCGCGTGGTGGCCGGCGCGACGGACGGGAAGACGGCGGCGAGCGGCGCCAACGGCAACAAGCAGCAGCAGAAGGAGGAGGAGATGCGGAAGGTGTTCGAGAAGAGCAAGAAGGACCTGGAGAAGCTGCTGGACATCTACGAGCAGCGGCTGGAGGAGGCGGCGTACCTGGCCGGCGACAAGTTCACCATCGCCGACCTGTCCCACCTCCCCAACGCCGACCGCCTCGCCTCCGACCCGCGCTCCCGCCGCATGTTCGAGGCGCGCAAGAACGTGAGCAGGTGGTGGAACAACATCTCCAGCCGCGAGTCGTGGGAGTACGTCAAGAGCCTGCAGCGCCCGCCGTC]
[+] EMBL C74918 [ CTGCATAATACTTCCTTCTCAAATCCCAACCAACAGTTGCAGTAGAGTCACTAGCCGCCCACTGCAACTGAAATGGCGCCGGCGAGCGTGAAGGTTTTCGGGTCACCCACCTCGGCGGAGGTTGCCCGCGTGCTCATGTGCCTCTTCGAGAAGGACGTCGAGTTCCAGCTCGTCCGTGTCGACGCGTACCGCGGCACGCAGCGCATGCCCCAATATCTCAAGCTTCAGCCGCTCGGCGAGGCGCTCACGTTCGAAGATGACAACCTCACCCTGTCCGAGTCGAGGGGGATCCTTCGCCACATAGCGCACAAGTACGCG AGGCAGGGAAACCCGGACCTGATCGGCAC GGGCGCGCTGGGAGCGG GNTNCCATCGAGCAGT GGCTGCAGACGGGAAGCGCAG AGC TTC GACGTGCCCAGCGCCGAGAATGGTCTAAAGCCTCG ]
[+] EMBL AU065313 [ TTCCTTCTCAAATCCCAACCAACAGTTGCAGTAGAGTCACTAGCCGCCCACTGCAACTGAAATGGCGCCGGCGAGCGTGAAGGTTTTCGGGTCACCCACCTCGGCGGAGGTTGCCCGCGTGCTCATGTGCCTCTTCGAGAAGGACGTCGAGTTCCAGCTCGTCCGTGTCGACGCGTACCGCGGCACGCAGCGCATGCCCCAATATCTCAAGCTTCAGCCGCTCGGCGAGGCGCTCACGTTCGAAGATGACAACCTCACCCTGTCCGAGTCGAGGGGGATCCTTCGCCACATAGCGCACAAGTACGCG AGGCAGGGAAACCCGGACCTGATCGGCACGGGGCGCGCTGGGAGCGC CGTTCCATCGAGCAGTGGGCTGNAGAC GGAGGCGCAGNAGCTTTCGGANGTGCCCAGC ]
[+] EMBL C74575 [ TTCCTTCTCAAATCCCAACCAACAGTTGCAGTAGAGTCACTAGCCGCCCACTGCAACTGAAATGGCGCCGGCGAGCGTGAAGGTTTTCGGGTCACCCACCTCGGCGGAGGTTGCCCGCGTGCTCATGTGCCTCTTCGAGAAGGACGTCGAGTTCCAGCTCGTCCGTGTCGACGCGTACCG GGCACGCAGCGCATGCCCCAATATCTCAAGCTTCAGCCGCTCGGCGAGGCGCTCACGTTCGAAGATGACAACCTCAACCTGTCCGAGTCGAGGGGGATCCTTCGCCACATAGCGCACAAGTACGCGAAGGAAGGGAAAnc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12986#0 --------------------ATTAATCAGTTAAG---CAACACTTCGATTCCTCGCCGCC 37
consensus_12986#1 CACACCACCATCTGCATAATACTTCCTTCTCAAATCCCAACCAACAGTTGCAGTAGAGTC 60
* * * ** **** * * * * *
consensus_12986#0 GTTN-CCGCCGCCGCCGACCGGAAAGATGCCGGGAGCCGTGAAGGTGTTCGGGTCGCCGT 96
consensus_12986#1 ACTAGCCGCCCACTGCAACTGAAATGGCGCCGGCGAGCGTGAAGGTTTTCGGGTCACCCA 120
* ***** * * ** * ** * ***** ********* ******** **
consensus_12986#0 CGTCGGCCGAGGTGGCCCGCGTGCTGGCTTGCCTGTTCGAGAAGGACGTCGAGTTCCAGC 156
consensus_12986#1 CCTCGGCGGAGGTTGCCCGCGTGCTCATGTGCCTCTTCGAGAAGGACGTCGAGTTCCAGC 180
* ***** ***** *********** ***** *************************
consensus_12986#0 TCATCCGCGTCGACTCCTTTCGCGGGTCCAAACGCATGCCCCAGTATCTNAAACTCCAGC 216
consensus_12986#1 TCGTCCGTGTCGACGCGTACCGCGGCACGCAGCGCATGCCCCAATATCTCAAGCTTCAGC 240
** **** ****** * * ***** * * *********** ***** ** ** ****
consensus_12986#0 CTCACGGCGAGGCTCTCACCTTCGAGGACGGCAATNTNACGCTCGTCGAGTCGAGGAAGA 276
consensus_12986#1 CGCTCGGCGAGGCGCTCACGTTCGAAGATGACAACCTCACCCTGTCCGAGTCGAGGGGGA 300
* * ********* ***** ***** ** * *** * ** ** ********** **
consensus_12986#0 TCATAAGGCACATTGCGGACAAGTACAAGAACCAGGGGAACCGGGACCTGATCGGGATGG 336
consensus_12986#1 TCCTTCGCCACATAGCGCACAAGTACGCGAGGCAGGGAAACCCGGACCTGATCGGCACGG 360
** * * ***** *** ******** ** ***** **** ************ * **
consensus_12986#0 GGGCGTTGGAGAGGTCGT-CGATCGAGCAGTGGCTGCAGACGGAGGCGCAGAGCTTCGAC 395
consensus_12986#1 GCGCGCTGGGAGCGCCGTTCCATCGAGCAGTGGCTGCAGACGGAGGCGCAGAGCTTCGAC 420
* *** *** * *** * ***************************************
consensus_12986#0 GTGCCCAGCGCCGACGTGGTCTACAGCCTCGCCTACCTGCCGGCGGCGACGACGCAGCCT 455
consensus_12986#1 GTGCCCAGCGCCGAGATGGTCTACAGCCTCGCCTTCCTGCCGCC-----CAACAT-GCCC 474
************** ****************** ******* * * ** ***
consensus_12986#0 AACAAGGGCGCCGCCGCCGCCGACGGTGGCCGCTGCGAGGAGGAGAAGAACGACGACGGC 515
consensus_12986#1 AAGCAGAACGACAACGGGAACGGGAACGGCAACGGCTACGGCAACAGCAATGGC-AGGGA 533
** ** ** * ** ** *** * ** * * * * ** * * * **
consensus_12986#0 GGCCGTGACCGGCAGTACAGCAGCCAGAGGCAGGGCGGCGCCGGCGCCGGAGGAGGAAGG 575
consensus_12986#1 GGTCCAGGTGGCGAACGCGTCGAGCAAGCGCGTGGTGGCCGGCGCGACGGACGGGAAGAC 593
** * * * * * * ** ** ** *** *** **** * * *
consensus_12986#0 GATGGCCAG--ATGGCGGCGGC-----GCACCGGCAGAAGGTGGAGGAGATGAAGCAGCT 628
consensus_12986#1 GGCGGCGAGCGGCGCCAACGGCAACAAGCAGCAGCAGAAGGAGGAGGAGATGCGGAAGGT 653
* *** ** * * **** *** * ******** ********** * ** *
consensus_12986#0 GTTCGAGAAGAGCAGCAAGGAGCTGAGCAAGGTGCTGGACATCTACGAGCAGCGGCTGGA 688
consensus_12986#1 GTTCGAGAAGAGCAAGAAGGACCTGGAGAAGCTGCTGGACATCTACGAGCAGCGGCTGGA 713
************** ***** *** *** ****************************
consensus_12986#0 GGAGGCGGAGTACCTCGCCGGCGACAAGTTCACCCTCGCCGACCTTTCGCACCTCCCCAA 748
consensus_12986#1 GGAGGCGGCGTACCTGGCCGGCGACAAGTTCACCATCGCCGACCTGTCCCACCTCCCCAA 773
******** ****** ****************** ********** ** ***********
consensus_12986#0 CGCCGACCGCCTCGCCGCCGACCCGCGCACGCTCCGGATGCTGCAGTCCCGCCGCAACGT 808
consensus_12986#1 CGCCGACCGCCTCGCCTCCGACCCGCGCTCCCGCCGCATGTTCGAGGCGCGCAAGAACGT 833
**************** *********** * * *** *** * ** * *** *****
consensus_12986#0 CAGCCGGTGGTGGGCCGACGTCTCCGGCCGCGAGTCGTGGAAGCAGGTCAAGAGCCTCAA 868
consensus_12986#1 GAGCAGGTGGTGGAACAACATCTCCAGCCGCGAGTCGTGGGAGTACGTCAAGAGCCTGCA 893
*** ******** * ** ***** ************** ** * *********** *
consensus_12986#0 CCGCCCGCCCTCCGCCGAGGCTCCCTTCTGATGATGAGGTCAGCCACCGTGCTCTTCCGG 928
consensus_12986#1 GCGCCCGCCGTC------------------------------------------------ 905
******** **
consensus_12986#0 CCGCCGGCGGCGGCGGCGGCGGCCGGCGAGAGGAGGAGGAGGAGGAGAAGGGGGTCGCTT 988
consensus_12986#1 ------------------------------------------------------------
consensus_12986#0 TGCTTTATGATTCGTGCTGCGTACACATTTTCCAATGTCGTCGTCGTCGTCGTCAATAAC 1048
consensus_12986#1 ------------------------------------------------------------
consensus_12986#0 CGGACACGTACGTTCGTGTTCGCGCCATATATATCCTGCTGCTGTTGGTGAATTCCGAGT 1108
consensus_12986#1 ------------------------------------------------------------
consensus_12986#0 GGTCACATTATTATATTATATAACTGTCAGTCTTGTAACAAGTTCAATAAAATGCTTGCC 1168
consensus_12986#1 ------------------------------------------------------------
consensus_12986#0 CCTTTGTCGTGAAAAAAAAAAAAAAAAAAAAAAAA 1203
consensus_12986#1 -----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||