These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2113 fasta sequence [AGTAAGGAACACAGGCGCCGCGGCCACAACCCACACGCGAACCGGCGAACACGAGCGAGAGTGCGAGAGCGAGACGCATCCTGCCACCACCGGCGACCAAGGCCCGCAGCGAGCCGGTCGCACGGTGGCACCTCGCGTCCTCGGCCCCTCCTCCTCGCCATCCGCCCATCCCTCGTCGGTCGCGGCCTCCCCGAACGAGCTGGCTCCGAGCCGAGCCAGCTCGGTACACTAACGAGCTGGAGCGAGCCGAGCCGAGCCAAGATATCCACCCCTAGTGTGGCCACAAACAACAAGAGAGAGCAGACACCACCACACCATCCAACCAACCAAATTCCTCTCTCCTCCGCCGCGCCCGCGCCGCAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGGCGGCCCGGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTTCCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGTTCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGATGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCCCATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGCAAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGAATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCACATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATCAATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAAAGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGACCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTCAGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATTTCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTTTCTTCCTGGCATCAAGCAACGGTTGTTGTCATTTATTTTTCGCAAGACATGGAATGAGGAATCTGATCAGACCTTGAGAGTCCAGCATCTGAAGAAGAAGTTCTATTTTCACTTTCAAGACTATGTTGATCTTATCATATGGAAGGTGCAGTTTTTGGATCGTCATCACCTATTTATCAAGTTTGGTAGTGTGGATGGAGGGGTTTCTCGCAGCACTGAACAGAATTCAGCATTCTTTGCTGTGTACAACATGGAGACGACAGATATTGTTTCACTCTATCAGAATTCTTCGGAGGAGCTCTATTCATTGTTTGAATATTTTTATGACCATTTTCACACAAATCCACAAAATTCATCGCATGGAAATTTTATCTCGTCACATTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCACCTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCGCCATACTTTGACCTATCATTGTTTCGGTATGATGAGAAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTAAAAAAACTCGAGACTAGTT] [+] EMBL AK100613 [AGTAAGGAACACAGGCGCCGCGGCCACAACCCACACGCGAACCGGCGAACACGAGCGAGAGTGCGAGAGCGAGACGCATCCTGCCACCACCGGCGACCAAGGCCCGCAGCGAGCCGGTCGCACGGTGGCACCTCGCGTCCTCGGCCCCTCCTCCTCGCCATCCGCCCATCCCTCGTCGGTCGCGGCCTCCCCGAACGAGCTGGCTCCGAGCCGAGCCAGCTCGGTACACTAACGAGCTGGAGCGAGCCGAGCCGAGCCAAGATATCCACCCCTAGTGTGGCCACAAACAACAAGAGAGAGCAGACACCACCACACCATCCAACCAACCAAATTCCTCTCTCCTCCGCCGCGCCCGCGCCGCAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGGCGGCCCGGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTTCCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGTTCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGATGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCCCATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGCAAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGAATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCACATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATCAATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAAAGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGACCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTCAGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATTTCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTTTCTTCCTGGCATCAAGCAACGGTTGTTGTCATTTATTTTTCGCAAGACATGGAATGAGGAATCTGATCAGACCTTGAGAGTCCAGCATCTGAAGAAGAAGTTCTATTTTCACTTTCAAGACTATGTTGATCTTATCATATGGAAGGTGCAGTTTTTGGATCGTCATCACCTATTTATCAAGTTTGGTAGTGTGGATGGAGGGGTTTCTCGCAGCACTGAACAGAATTCAGCATTCTTTGCTGTGTACAACATGGAGACGACAGATATTGTTTCACTCTATCAGAATTCTTCGGAGGAGCTCTATTCATTGTTTGAATATTTTTATGACCATTTTCACACAAATCCACAAAATTCATCGCATGGAAATTTTATCTCGTCACATTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCACCTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCGCCATACTTTGACCTATCATTGTTTCGGTATGATGAGAAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGT ] [+] EMBL AK058683 [ ACACCACCACACCATCCAACCAACCAAATTCCTCTCTCCTCCGCCGCGCCCGCGCCGCAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGGCGGCCCGGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTTCCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGTTCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGATGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCCCATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGCAAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGAATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCACATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATCAATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAAAGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGACCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTCAGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATTTCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTTTCTTCCTGGCATCAAGCAACGGTTGTTGTCATTTATTTTTCGCAAGACATGGAATGAGGAATCTGATCAGACCTTGAGAGTCCAGCATCTGAAGAAGAAGTTCTATTTTCACTTTCAAGACTATGTTGATCTTATCATATGGAAGGTGCAGTTTTTGGATCGTCATCACCTATTTATCAAGTTTGGTAGTGTGGATGGAGGGGTTTCTCGCAGCACTGAACAGAATTCAGCATTCTTTGCTGTGTACAACATGGAGACGACAGATATTGTTTCACTCTATCAGAATTCTTCGGAGGAGCTCTATTCATTGTTTGAATATTTTTATGACCATTTTCACACAAATCCACAAAATTCATCGCATGGAAATTTTATCTCGTCACATTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCACCTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCGCCATACTTTGACCTATCATTGTTTCGGTATGATGAGAAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGT ] [+] EMBL CB635144 [ CGCCCGCGCCGCAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGGCGGCCCGGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTTCCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGTTCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGATGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCCCATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGCAAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGAATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCACATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATCAATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAAAGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGACCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTCAGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATTTCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTT ] [-] EMBL CF325866 [ ATGGAAATTTTATCTCGTCACATTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCACCTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCGCCATACTTTGACCTATCATTGTTTCGGTATGATGAGAAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATAAAACAGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAAAAAAAAAAAAAAAACTCGAGACTAGTT] consensusID : consensus_12988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 842 fasta sequence [ATTTTCAAAATTTCACAGTTTACAGTCAAGTTCAAACTTCAAACACATAGAAGATGCTACCTTGACTAACAAATATGTGACACAATCTTCTCTAAATATAAGCCACGCGAGGCGCTTTTGTCTATTTTCTCCCCCTTTTGCCCCTGGTAAATAAAAACTACAACTCGCATGAATTATGGTTGTTCTTTTCCGTGTGGGCATAACTGAAGGGTAAGAAAATCATCTACCCCCTTTTGTAGGTCCCTTTGATCCACTCCTATGAATAAATGGCAGTTTTTTTTTTTTCTTATTGTTATTTAGTTCTTGACATTTCCTTGTCCCTCGTTTTCAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAGCAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTTTAGGTTCTCCTTGCTTCGAGTATGCTGGAATGTACATTTTGTAGGAATATGGCTGTCTGAAGGTAAATGTAGTTCATCTAAAAAAGGAAGGTAAAATAGAGTTAACAAAATGAGCTTTTATTTTGAATTCAAAAAAAAAA] [-] EMBL CB673009 [ATTTTCAAAATTTCACAGTTTACAGTCAAGTTCAAACTTCAAACACATAGAAGATGCTACCTTGACTAACAAATATGTGACACAATCTTCTCTAAATATAAGCCACGCGAGGCGCTTTTGTCTATTTTCTCCCCCTTTTGCCCCTGGTAAATAAAAACTACAACTCGCATGAATTATGGTTGTTCTTTTCCGTGTGGGCATAACTGAAGGGTAAGAAAATCATCTACCCCCTTTTGTAGGTCCCTTTGATCCACTCCTATGAATAAATGGCAGTTTTTTTTTTTTCTTATTGTTATTTAGTTCTTGACATTTCCTTGTCCCTCGTTTTCAGCTGATTTCAGCGATTGATAGGCACTGACACTGTACAGAGCATCCAATAAAATTCATATCAGTGAAGCAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTTTGGTGCTTTTGACAGCAGGGCAAAAAGAATTTTTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTTTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAAAGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTATGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCCTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATTTCTAAGGGAAAAATGTGGTTTTAG ] [-] EMBL CB635145 [ AACACATAGAAGATGCTACCTTGACTAACAAATATGTGACACAATCTTCTCTAAATATAAGCCATGCGAGGCACTTTTGTCTATTTTATCCCCCTTTTGACTTTGCTAAATAAAAACTACCACTGGCATGAATTATGGTTGTTCTTTTCCATGTGGGCATAACTGAAGGGTAAGAAAATCATCTACCCACTTTCATAGGTCCCTTTGATCCACTCCTATGAATAAAT GTTAGTTTTTTTTCTTATTGTTATTTAGTTCTTGACATTTCCTTGTCCCTCGTTTTCAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTTTAGGTTCTCCTTGCTTCGAGTATGCTGGAATGTACATTTTGTAGGAATATGGCTGTCTGAAGGTAAATGTAGTTCATCTAAAAAAGGAAGGTAAAATAGAGTTAACAAAATGAGCTTTTATTTTGAATT ] [-] EMBL CA998417 [ GCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATATAATTTATATCAGTGAACCAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTATGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCGTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAGCGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTCAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTTTAGGTTCTCCTTGCTTCGAGTATGCTGGAATGTACATTTAGTAGGAATATGGCTGTCTGAAGGTAAATGTAGTTCATATCAA ] [-] EMBL CA998418 [ CAAATTCATGATAAACCCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTGTATTCAGCAGACATATATGCAGCCAACTGTTGTCTATTTACATTTCAGGAGATAGAGCGATATTGCCGTTCCGTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTCGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAACGTGGGTTTAGGTTCTCTTTGCTTGGAGTATGCTGGCATGTACATTTTGTAGGAATATGGCTGTGTGAAGGTAAATGTAGTTCATATAA ] [+] EMBL BI813816 [ CCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTT GCCGCCTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTTTAGGTTCTCCTTGCTTCGATTATGCTGGAATATACATTTTGTAGGAATATGGCTGTCTGAAGGTAAATGTAGTTCATCTAAAAAAGGAAGGTAAAATAGAGTTAAC AAATGAGCTTTTATTTTGAATTCAAAAAAAAAA] consensusID : consensus_12988#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence [AGGGTATTATTTTTTTTGACTCACTACAGTTCTTGGCTCTGTTATTCTGTTTTTATTGTTTCCACAAGGTGTGAGGTTGTTTGAAAGTTATTGTGCTAATTCCTACATCTTTTGCAATGTTCTGATTAAAAACCGCACGAGTTTCAATTATTAAGTCAATACTGCTCAGTTCTACATGCTTGGATATAATGTACAGCAACACTAAATCACCAACATTGTACTGAATAATACACTAAATCCCAAATGCATAATGAAAGTTTTCTTATTTTCTGAATCGTCTTGGCATTGAACTGTCTATGATGTGAGGAATTTAAAAGGTATCCCTGTATTACCCTTAAGCCTTGAACCTTGTGAGCTTGAGCAGTCTTCCAGTAAGGGCCTTTTTTTATGTCTGCTTTCTATTAACACCAGGACAAGTGGTTTGCTTGTGAAAATTGTAGAATGAGCCAGATCTTTGTTACGGAAAGCTAGAGGTGTGAAATTACTAGTTGATGATCTTGGATATTTCTTGAAATCCACATTTATTTAATGTTATCTTACTATTTATATATGGCATAAGGCATATGCTAACTAATTTGTGATGCTGACTTTTGGTAAATGCCTGCTCTATATTTAGCAGTTTGTTAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCACCATACTTTGACCTATCATTGTTTCGGTATGATAAGGTACACTCTTCAACTTGTTTGAAATAACTATACATCAGACAGCAGTTGATATTTTCAAAATTTCACAGTTTACAGTCAAGTTCAAA] [+] EMBL CB673008 [AGGGTATTATTTTTTTTGACTCACTACAGTTCTTGGCTCTGTTATTCTGTTTTTATTGTTTCCACAAGGTGTGAGGTTGTTTGAAAGTTATTGTGCTAATTCCTACATCTTTTGCAATGTTCTGATTAAAAACCGCACGAGTTTCAATTATTAAGTCAATACTGCTCAGTTCTACATGCTTGGATATAATGTACAGCAACACTAAATCACCAACATTGTACTGAATAATACACTAAATCCCAAATGCATAATGAAAGTTTTCTTATTTTCTGAATCGTCTTGGCATTGAACTGTCTATGATGTGAGGAATTTAAAAGGTATCCCTGTATTACCCTTAAGCCTTGAACCTTGTGAGCTTGAGCAGTCTTCCAGTAAGGGCCTTTTTTTATGTCTGCTTTCTATTAACACCAGGACAAGTGGTTTGCTTGTGAAAATTGTAGAATGAGCCAGATCTTTGTTACGGAAAGCTAGAGGTGTGAAATTACTAGTTGATGATCTTGGATATTTCTTGAAATCCACATTTATTTAATGTTATCTTACTATTTATATATGGCATAAGGCATATGCTAACTAATTTGTGATGCTGACTTTTGGTAAATGCCTGCTCTATATTTAGCAGTTTGTTAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCACCATACTTTGACCTATCATTGTTTCGGTATGATAAGGTACACTCTTCAACTTGTTTGAAATAACTATACATCAGACAGCAGTTGATATTTTCAAAATTTCACAGTTTACAGTCAAGTTCAAA] consensusID : consensus_12988#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [TAGATGAACANCATCTGGTGCTTCTGACAGCAGGGGCAAAAAGAAATATCTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGGAGATAGAAACGATATTGCCGTTCCCTCAATTGTATTTGTTTACAGTTGTGNAGCGGTGCACAGCTCAANTAAAAATTTTGGGNCGCCTGTNATTAGGATGTTTTATCGGCCAAAGATCTTATTATANGGCCAAAGGAAAAATGTGGGTTTTAAGGTTCTCCTTGCTTCNAATTATGCTGGAAATATACATTTTTGTTATGAAATATGGGCTGTCTGAAAGGTAAATGTTANTT] [+] EMBL AA754616 [TAGATGAACANCATCTGGTGCTTCTGACAGCAGGGGCAAAAAGAAATATCTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGGAGATAGAAACGATATTGCCGTTCCCTCAATTGTATTTGTTTACAGTTGTGNAGCGGTGCACAGCTCAANTAAAAATTTTGGGNCGCCTGTNATTAGGATGTTTTATCGGCCAAAGATCTTATTATANGGCCAAAGGAAAAATGTGGGTTTTAAGGTTCTCCTTGCTTCNAATTATGCTGGAAATATACATTTTTGTTATGAAATATGGGCTGTCTGAAAGGTAAATGTTANTT] consensusID : consensus_12988#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [GGGTCGACCCACGGCGTCCGCACCACGCGTCCGGTTACTAGTGGTCTGTGGCCGATCAAATCGGCTGGAGAATTTATATCAAGTGGAAACTAGCCAAATGTTGTCAAAATTCATAGATANAAACCAAGGTTCTAGATTCTGGTGCNTTCTGACAAGCAGGGCCAAAAGAGAATATCGTTCCTTCTTGTTTCAACACCAATTTTTCCACTCCNTCTGCACTTTCTATTCGAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCCTGTAAAAAAAAAA] [+] EMBL BQ906741 [GGGTCGACCCACGGCGTCCGCACCACGCGTCCGGTTACTAGTGGTCTGTGGCCGATCAAATCGGCTGGAGAATTTATATCAAGTGGAAACTAGCCAAATGTTGTCAAAATTCATAGATANAAACCAAGGTTCTAGATTCTGGTGCNTTCTGACAAGCAGGGCCAAAAGAGAATATCGTTCCTTCTTGTTTCAACACCAATTTTTCCACTCCNTCTGCACTTTCTATTCGAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCCTGTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 AGTAAGGAACACAGGCGCCGCGGCCACAACCCACACGCGAACCGGCGAACACGAGCGAGA 60 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 GTGCGAGAGCGAGACGCATCCTGCCACCACCGGCGACCAAGGCCCGCAGCGAGCCGGTCG 120 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 CACGGTGGCACCTCGCGTCCTCGGCCCCTCCTCCTCGCCATCCGCCCATCCCTCGTCGGT 180 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 CGCGGCCTCCCCGAACGAGCTGGCTCCGAGCCGAGCCAGCTCGGTACACTAACGAGCTGG 240 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 AGCGAGCCGAGCCGAGCCAAGATATCCACCCCTAGTGTGGCCACAAACAACAAGAGAGAG 300 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 CAGACACCACCACACCATCCAACCAACCAAATTCCTCTCTCCTCCGCCGCGCCCGCGCCG 360 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 CAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGGCGGCCC 420 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 GGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTT 480 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 CCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGT 540 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 TCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGA 600 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 TGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCC 660 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 CATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGC 720 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 AAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGA 780 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 ATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCAC 840 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 ATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATC 900 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 AATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAA 960 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 AGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGA 1020 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 CCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTC 1080 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 AGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATT 1140 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 TCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTTTCTTCCTGGCATCAAGCAACG 1200 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 GTTGTTGTCATTTATTTTTCGCAAGACATGGAATGAGGAATCTGATCAGACCTTGAGAGT 1260 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 CCAGCATCTGAAGAAGAAGTTCTATTTTCACTTTCAAGACTATGTTGATCTTATCATATG 1320 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 ------------------------------------------------------------ consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 GAAGGTGCAGTTTTTGGATCGTCATCACCTATTTATCAAGTTTGGTAGTGTGGATGGAGG 1380 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ---------------------------------------AGGGTATTATTTTTTTTGACT 21 consensus_12988#1 -------------ATTTTCAAAATTTCACAGTTTACAGTCAAGTTCAAACTTCAAACACA 47 consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 GGTTTCTCGCAGCACTGAACAGAATTCAGCATTCTTTGCTGTGTACAACATGGAGACGAC 1440 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 CACTACAGTTCTTGGCTCTGTTATTCTGTTTTTATTGTTTCCACAAGGTGTGAGGTTGTT 81 consensus_12988#1 TAGAAGATGCTACCTTGACTAACAAATATGTGACACAATCTTCTCTAAATATAAGCCACG 107 consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 AGATATTGTTTCACTCTATCAGAATTCTTCGGAGGAGCTCTATTCATTGTTTGAATATTT 1500 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 TGAAAGTTATTGTGCTAATTCCTACATCTTTTGCAATGTTCTGATTAAAAACCGCACGAG 141 consensus_12988#1 CGAGG--CGCTTTTGTCTATTTTCTCCCCCTTTTGCCCCTGGTAAATAAAAACTACAACT 165 consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 TTATGACCATTTTCACACAAATCCACAAAATTCATCGCATGGAAATTTTATCTCGTCACA 1560 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 TTTCAATTATTAAGTCAATACTGCTCAGTTCTACATGCTTGGATATAATGTACAGCAACA 201 consensus_12988#1 CGCATGAATTATGGTTGTTCTTTTCCGTGTGGGCATAACTGAAGGGTAAGAAAATCATCT 225 consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 TTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCAC 1620 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 CTAAATCACCAACATTGTACTGAATAATACACTAAATCCCAAATGCATAATGAA--AGTT 259 consensus_12988#1 ACCCCCTTTTGTAGGTCCCTTTGATCCACTCCTATGAATAAATGGCAGTTTTTTTTTTTT 285 consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 CTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCC 1680 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 TTCTTATTTTCTGAATCGTCTTGGCATTGAACTGTCTATGATGTGAGGAATTTAAAAGGT 319 consensus_12988#1 CTTATTGTTATTTAGTTCTTGACATTTCCTTGTCCCTCGTTTTCAGCTGATTTCAGCGAT 345 consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 TTCGCCATACTTTGACCTATCATTGTTTCGG---TATGATGAGAAGCTGATTTCAGCGAT 1737 consensus_12988#4 --------GGGTCGACC---CACGGCGTCCG---CACCACGCG--TCCGGTT---ACTAG 41 consensus_12988#2 ATCCCTGTATTACCCTTAAGCCTTGAACCTTGTGAGCTTGAGCAGTCTTCCAGTAAGGGC 379 consensus_12988#1 TGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCA-GTGAAG--CAGCC 402 consensus_12988#3 ------------------------------------------------------------ consensus_12988#0 TGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCA-GTGAAA--CAGCC 1794 consensus_12988#4 TGGTCTGTG-----GCCGATCAAATCGGCTGG-AGAATTTATATCAAGTGGAAACTAGCC 95 consensus_12988#2 CTTTTTTTATGTCTGCTTTCTATTAACACCAGGACAAGTGGTTTGCTTGTGAAAATTGTA 439 consensus_12988#1 AAATGTTGTCAAA-TTCA--AGATAAAACC--AGGTTC-AGATT-CTGGTGCTT-CTGAC 454 consensus_12988#3 -----------------T--AGATGAA----------C-ANCAT-CTGGTGCTT-CTGAC 28 consensus_12988#0 AAATGTTGTCAAA-TTCA--AGATAAAACC--AGGTTC-AGATT-CTGGTGCTT-CTGAC 1846 consensus_12988#4 AAATGTTGTCAAAATTCAT-AGATANAAACCAAGGTTCTAGATT-CTGGTGCNTTCTGAC 153 consensus_12988#2 GAATGAGCCAGATCTTTGTTACGGAAAGCTAGAGGTGTGAAATTACTAGTTGATGATCTT 499 * * * * ** ** * * consensus_12988#1 A-GCAGGG-C-AAAAAGAATATC--TTCCTTCTTGTTTCA---CCCATTTTTCC----C- 501 consensus_12988#3 A-GCAGGGGC-AAAAAGAAATAT--CTCCTTCTTGTTTCA---CCCATTTTTCC----C- 76 consensus_12988#0 A-GCAGGGC--AAAAAGAATATC--TTCCTTCTTGTTTCA---CCCATTTTTCC----C- 1893 consensus_12988#4 AAGCAGGGCCAAAAGAGAATATCG-TTCCTTCTTGTTTCAACACCAATTTTTCCACTCC- 211 consensus_12988#2 GGATATTTCTTGAAATCCACATTTATTTAATGTTATCTTA----CTATTTATATATGGCA 555 * ** * * * ** * * * * **** * * consensus_12988#1 TCTCGCACTTTCTATTC-AGCAGACATATATGCAGCCAACTGTTGTCAATT-TACATTT- 558 consensus_12988#3 TCTCGCACTTTCTATTC-AGCAGACATATATGCAGCCAACTGTTGTCAATT-TACATTT- 133 consensus_12988#0 TCTCGCACTTTCTATTC-AGCAGACATATATGCAGCCAACTGTTGTCAATT-TACATTT- 1950 consensus_12988#4 NTCTGCACTTTCTATTCGAGCAGACATATATGCAGCCAACTGTTGTCAATT-TACATTT- 269 consensus_12988#2 TAAGGCATATGCTAACTAATTTGTGATGCTGACTTTTGGTAAATGCCTGCTCTATATTTA 615 *** * *** * * ** * ** * * ** **** consensus_12988#1 -CAGG-AGATAGAA-CGATATTGCCGTTCCCTCAATTGTATTTGTA-ACAGTTGTGA-GC 613 consensus_12988#3 -CAGGGAGATAGAAACGATATTGCCGTTCCCTCAATTGTATTTGTTTACAGTTGTGNAGC 192 consensus_12988#0 -CAGG-AGATAGAA-CGATATTGCCGTTCCCTCAATTGTATTTGTA-ACAGTTGTGA-GC 2005 consensus_12988#4 -CAGG-AGATAGAA-CGATATTGCCGTTCCCTCAATTGTATTTGTA-ACAGTTGTGA-GC 324 consensus_12988#2 GCAGTTTGTTAAAA-AGATGATGGCGT-CACTACCTTACACTTGT---CAATCACAAAGT 670 *** * ** ** *** ** *** * ** ** * **** ** * * consensus_12988#1 GGTGCACAGCTCA-GTAAAAATTTTGG-CCGCTTGTAGT-AGGATGTTTTATCGGC---A 667 consensus_12988#3 GGTGCACAGCTCAANTAAAAATTTTGGGNCGCCTGTNATTAGGATGTTTTATCGGCC--A 250 consensus_12988#0 GGTGCACAGCTCA-GTAAAAATTTTGG-CCGCTTGTAGT-AGGATGTTTTATCGGC---A 2059 consensus_12988#4 GGTGCACAGCTCA-GTAAAAATTTTGG-CCGCCTGTAAA-AAAAAAA------------- 368 consensus_12988#2 CCTTCACCATACTTTGACCTATCATTGTTTCGGTATGATAAGGTACACTCTTCAACTTGT 730 * *** * * ** * * * * * consensus_12988#1 AAGATCTTATTATAGG--CAAAGGAAAAATGTGGGTTT--AGGTTCTCCTTGCTTCGAGT 723 consensus_12988#3 AAGATCTTATTATANGGCCAAAGGAAAAATGTGGGTTTTAAGGTTCTCCTTGCTTCNAAT 310 consensus_12988#0 AAGATCTTATTATAGG--CAAAGGAAAAATGTGGGTAAAAAAACTCGAGACTAGTT---- 2113 consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 TTGAAATAACTATACA--TCAGACAGCAGTTGATATTTTCAAAATTTCACAGTTTACAGT 788 consensus_12988#1 -ATGCTGGAA-TGTACATTTT-GTA--GGAATATGG-CTGTCTGAA-GGTAAATGTAGTT 776 consensus_12988#3 TATGCTGGAAATATACATTTTTGTTATGAAATATGGGCTGTCTGAAAGGTAAATGTTANT 370 consensus_12988#0 ------------------------------------------------------------ consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 CAAGTTCAAA-------------------------------------------------- 798 consensus_12988#1 CATCTAAAAAAGGAAGGTAAAATAGAGTTAACAAAATGAGCTTTTATTTTGAATTCAAAA 836 consensus_12988#3 T----------------------------------------------------------- 371 consensus_12988#0 ------------------------------------------------------------ consensus_12988#4 ------------------------------------------------------------ consensus_12988#2 ------------------------------------------------------------ consensus_12988#1 AAAAAA 842 consensus_12988#3 ------ consensus_12988#0 ------ consensus_12988#4 ------ consensus_12988#2 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||