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Oryza sativa
cluster # 12990 cluster # 12990       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12990#0 length = 1343 sequences # 8  
consensus_12990#1 length = 424 sequences # 1  
consensus_12990#2 length = 321 sequences # 2  
consensus_12990#3 length = 261 sequences # 1  

consensusID : consensus_12990#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1343
fasta sequence
                              [CCTGCCCACCGCCCTCCCTCTCCTCCTCCTCGACTACTAGAACCCAAAGAGGAGCACGAATCCGCCTCCTTCAATCCCCTCAAAAACCCTCGTTAACCCCCGCATCGATCTCGCCGGCAGATCGCGGAACTCGCAAAGATCGGCGGCTTTTCTTTTCTTTTCTTTTTCTTGCAGCAAAGATCGGATTTTCTGTCTCTTTTCATCGGGAGGAGATAGATGGCGGGGGGAGGCAGCAGGAGGGGCGCGGCGGCNGCNGCNGANGAGGCGAGGATCGGCACCATCAACGTGTTCGCGGCGCTCGACACGCTCAAGAGGAGGAATAAGCCTTCGTCGTCGTCGAACAAGCACTCGGAGAAAGATAAGGAGGTGCTGTGGGCCCCCGCGCCGCTCACCACCAGGTCCTGGGCCGACGTCGAGAACGACGACGACGACGACTACTTCGCCACCTCCGCGCCGCCGCGCCCCGTCTGGGGGACACACCACCACGCCGCTGACGCCCACGACGACGACCACGACGAGCAAGCTGCCCTTGAACAGGAACTTGAAAGTGAAGATGAGGAGGTTGATGATGATGCTGAGGATGAACACGAACATGAAACAGAGGATGCTACCCCTGCTGAACCTGCAATGAATAAAGCTGCAGCTCCTCCTGCACCACCGAAAGATACTGAAAGACAACTCTCCAAGAAGGAGTTAAAGAAAAAGGAACTGGAAGAGCTTGATGCTATTTTGGCTGAGTTGGAACTTTCTAGCAAATCAAACAATGATGCTCAAAATGAAACAAACGGCAAGAAAGGTGCAGAGCAAGCTGCTGATGGAGAGAATAAAGAAGGTGCACCTGCCCCTGCAGAGAGCAAGAGCTCAAAGAAGAAGAAAGCTAAGAAAGACAAGTCTGCAAAGGAGGCGAAAGAAACACAGGAACTTAATGGTGGGGTGGAAGAAGCTGCTGGTGCTGAGCCTGATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCAATGAAGAAAAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTGAGGCCGCAGCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCTGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGATTACATGCAAAAATACAGTACA-TTAAAAAAAAGA]

[+] EMBL AK101047             [CCTGCCCACCGCCATCCCTCTCCTCCTCCTCGACTACTAGAACCCAAAGAGGAGCACGAATCCGCCTCCTTCAATCCCCTCAAAAACCCTCGTTAACCCCCGCATCGATCTCGCCGGCAGATCGCGGAACTCGCAAAGATCGGCGGCTTTTCTTTTCTTTTCTTTTTCTTGCAGCAAAGATCGGATTTTCTGTCTCTTTTCATCGGGAGGAGATAGATGGCGGGGGGAGGCAGCAGGAGGGGCGCGGCGGCNGCNGCNGANGAGGCGAGGATCGGCACCATCAACGTGTTCGCGGCGCTCGACACGCTCAAGAGGAGGAATAAGCCTTCGTCGTCGTCGAACAAGCACTCGGAGAAAGATAAGGAGGTGCTGTGGGCCCCCGCGCCGCTCACCACCAGGTCCTGGGCCGACGTCGAGAACGACGACGACGACGACTACTTCGCCACCTCCGCGCCGCCGCGCCCCGTCTGGGGGACACACCACCACGCCGCTGACGCCCACGACGACGACCACGACGAGCAAGCTGCCCTTGAACAGGAACTTGAAAGTGAAGATGAGGAGGTTGATGATGATGCTGAGGATGAACACGAACATGAAACAGAGGATGCTACCCCTGCTGAACCTGCAATGAATAAAGCTGCAGCTCCTCCTGCACCACCGAAAGATACTGAAAGACAACTCTCCAAGAAGGAGTTAAAGAAAAAGGAACTGGAAGAGCTTGATGCTATTTTGGCTGAGTTGGAACTTTCTAGCAAATCAAACAATGATGCTCAAAATGAAACAAACGGCAAGAAAGGTGCAGAGCAAGCTGCTGATGGAGAGAATAAAGAAGGTGCACCTGCCCCTGCAGAGAGCAAGAGCTCAAAGAAGAAGAAAGCTAAGAAAGACAAGTCTGCAAAGGAGGCGAAAGAAACACAGGAACTTAATGGTGGGGTGGGAGAAGCTGCTGGTGCTGAGCCTGATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCAATGAAGAAAAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTGAGGCCGCAGCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCTGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGATTACATGCA                          ]
[+] EMBL CB657788             [            CCTCCCTCTCCTCCTCCTCGACTACTAGAACCCAAAGAGGAGCACGAATCCGCCTCCTTCAATCCCCTCAAAAACCCTCGTTAACCCCCGCATCGATCTCGCCGGCAGATCGCGGAACTCGCAAAGATCGGCGGCTTTTCTTTTCTTTTCTTTTTCTTGCAGCAAAGATCGGATTTTCTGTCTCTTTTCATCGGGAGGAGATAGATGGCGGGGGGAGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB657793             [            CCTCCCTCTCCTCCTCCTCGACTACTAGAACCCAAAGAGGAGCACGAATCCGCCTCCTTCAATCCCCTCAAAAACCCTCGTTAACCCCCGCATCGATCTCGCCGGCAGATCGCGGAACTCGCAAAGATCGGCGGCTTTTCTTTTCTTTTCTTTTTCTTGCAGCAAAGATCGGATTTTCTGTCTCTTTTCATCGGGAGGAGATAGATGGCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB657789             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCTGNAACAGGAACTTGAAAGTGAAGATGAGGAGGTTGATGATGATGCTGAGGATGAACACGAACATGAAACAGAGGATGCTACCCCTGCTGAACCTGCAATGAATAAAGCTGCAGCTCCTCCTGCACCACCGAAAGATACTGAAAGACAACTCTCCAAGAAGGAGTTAAAGAAAAAGGAACTGGAAGAGCTTGATGCTATTTTGGCTGAGTTGGAACTTTCTAGCAAATCAAACAATGATGCTCAAAATGAAACAAACGGCAAGAAAGGTGCAGAGCAAGCTGCTGATGGAGAGAATAAAGAAGGTGCACCTGCCCCTGCAGAGAGCAAGAGCTCAAAGAAGAAGAAAGCTAAGAAAGACAAGTCTGCAAAGGAGGCGAAAGAAACACAGGAACTTAATGGTGGGGTGGAAGAAGCTGCTGGTGCTGAGCCTGATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCAATGAAGAAAAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTGAGGCCGCAGCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCTGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGATTACATGCAAAAATACAGTACA TTAAAAAAAAGA]
[-] EMBL CB657794             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAAGATGAGGAGGTTGATGATGATGCTGAGGATGAACACGAACATGAAACAGAGGATGCTACCCCTGCTGAACCTGCAATGAATAAAGCTGCAGCTCCTCCTGCACCACCGAAAGATACTGAAAGACAACTCTCCAAGAAGGAGTTAAAGAAAAAGGAACTGGAAGAGCTTGATGCTATTTTGGCTGAGTTGGAACTTTCTAGCAAATCAAACAATGATGCTCAAAATGAAACAAACGGCAAGAAAGGTGCAGAGCAAGCTGCTGATGGAGAGAATAAAGAAGGTGCACCTGCCCCTGCAGAGAGCAAGAGCTCAAAGAAGAAGAAAGCTAAGAAAGACAAGTCTGCAAAGGAGGCGAAAGAAACACAGGAACTTAATGGTGGGGTGGAAGAAGCTGCTGGTGCTGAGCCTGATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCAATGAAGAAAAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTGAGGCCGCAGCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCTGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGATTACATGCAAAAATACAGTACATTTAAAAAAAAGA]
[-] EMBL CB657827             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGTTGATGATGATGCTGAGGATGAACACGAACATGAAACAGAGGATGCTACCCCTGCTGAACCTGCAATGAATAAAGCTGCAGCTCCTCCTGCACCACCGAAAGATACTGAAAGACAACTCTCCAAGAAGGAGTTAAAGAAAAAGGAACTGGAAGAGCTTGATGCTATTTTGGCTGAGTTGGAACTTTCTAGCAAATCAAACAATGATGCTCAAAATGAAACAAACGGCAAGAAAGGTGCAGAGCAAGCTGCTGATGGAGAGAATAAAGAAGGTGCACCTGCCCCTGCAGAGAGCAAGAGCTCAAAGAAGAAGAAAGCTAAGAAAGACAAGTCTGCAAAGGAGGCGAAAGAAACACAGGAACTTAATGGTGGGGTGGAAGAAGCTGCTGGTGCTGAGCCTGATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCAATGAAGAAAAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTGAGGCCGCAGCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCTGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACC TTAGGATCTTGATTACATGCAAAAATACAGTACA TTAAAAAAAAGA]
[-] EMBL CB657826             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATGCTATTTTGGCTGAGTTGGAACTTTCTAGCAAATCAACCAATGATGCTCAAAATGAAACAAACGGCAAGAAAGGTGCAGAGCAAGCTGCTGATGGAGAGAATAAAGAAGGTGCACCTGCCCCTGCAGAGAGCAAGAGCTCAAAGAAGAAGAAAGCTAAGAAAGTCAAGTTTGCAAAGGAGGTGAAAGAAACCCAGGAACTTAATGGTGGGGTGGAAGAAGCTGCTGGTCACGACCTTGATGAAGAGGTAGTTTTTATGGATGTCAAGGATGGTATAAAGATGGTAGCGTGAATGAAGAAAAAGAAGTAAAGg                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK063809             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGCGAAAGAAACACAGGAACTTAATGGTGGGGTGGAAGAAGCTGCTGGTGCTGAGCCTGATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCAATGAAGAAAAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTGAGGCCGCAGCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCTGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGATTACATGCAAAAATACAGTAC              ]


>consensus_12990#0 CCTGCCCACCGCCCTCCCTCTCCTCCTCCTCGACTACTAGAACCCAAAGAGGAGCACGAA TCCGCCTCCTTCAATCCCCTCAAAAACCCTCGTTAACCCCCGCATCGATCTCGCCGGCAG ATCGCGGAACTCGCAAAGATCGGCGGCTTTTCTTTTCTTTTCTTTTTCTTGCAGCAAAGA TCGGATTTTCTGTCTCTTTTCATCGGGAGGAGATAGATGGCGGGGGGAGGCAGCAGGAGG GGCGCGGCGGCNGCNGCNGANGAGGCGAGGATCGGCACCATCAACGTGTTCGCGGCGCTC GACACGCTCAAGAGGAGGAATAAGCCTTCGTCGTCGTCGAACAAGCACTCGGAGAAAGAT AAGGAGGTGCTGTGGGCCCCCGCGCCGCTCACCACCAGGTCCTGGGCCGACGTCGAGAAC GACGACGACGACGACTACTTCGCCACCTCCGCGCCGCCGCGCCCCGTCTGGGGGACACAC CACCACGCCGCTGACGCCCACGACGACGACCACGACGAGCAAGCTGCCCTTGAACAGGAA CTTGAAAGTGAAGATGAGGAGGTTGATGATGATGCTGAGGATGAACACGAACATGAAACA GAGGATGCTACCCCTGCTGAACCTGCAATGAATAAAGCTGCAGCTCCTCCTGCACCACCG AAAGATACTGAAAGACAACTCTCCAAGAAGGAGTTAAAGAAAAAGGAACTGGAAGAGCTT GATGCTATTTTGGCTGAGTTGGAACTTTCTAGCAAATCAAACAATGATGCTCAAAATGAA ACAAACGGCAAGAAAGGTGCAGAGCAAGCTGCTGATGGAGAGAATAAAGAAGGTGCACCT GCCCCTGCAGAGAGCAAGAGCTCAAAGAAGAAGAAAGCTAAGAAAGACAAGTCTGCAAAG GAGGCGAAAGAAACACAGGAACTTAATGGTGGGGTGGAAGAAGCTGCTGGTGCTGAGCCT GATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCAATGAAG AAAAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTGAGGCCGCA GCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAG CCTGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGT TCGCTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGT AGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGATTACATGCAAA AATACAGTACATTAAAAAAAAGA



consensusID : consensus_12990#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence
                              [AATGGTGGGGTGGAAGAAGCTGCTGGTCTGAGCCTGATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCATGAAGAAAAAGAAGTCAAGCAAGAGATGGACACAGCAGCAAGATTGCTGCATCTGAGGCCGCAGCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCCGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGATTACATGCATNCATACAGTACATTTCGCGCCTGGTTTCAAAAAA]

[+] EMBL BM420351             [AATGGTGGGGTGGAAGAAGCTGCTGGTCTGAGCCTGATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCATGAAGAAAAAGAAGTCAAGCAAGAGATGGACACAGCAGCAAGATTGCTGCATCTGAGGCCGCAGCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCCGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGATTACATGCATNCATACAGTACATTTCGCGCCTGGTTTCAAAAAA]


>consensus_12990#1 AATGGTGGGGTGGAAGAAGCTGCTGGTCTGAGCCTGATGAAGAGGTAGCTTCTATGGATG TCAAGGATCGTATAAAGAAGGTAGCCTCATGAAGAAAAAGAAGTCAAGCAAGAGATGGAC ACAGCAGCAAGATTGCTGCATCTGAGGCCGCAGCAAGGAGCGCGAAGCTTGCAGCTGCGA AGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCCGTGCGGTGAATTACTGCCCAGATTT TGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACATAGACAATGTTG GTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACA GGAAACCTTTTGAATCTTGATTACATGCATNCATACAGTACATTTCGCGCCTGGTTTCAA AAAA



consensusID : consensus_12990#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 321
fasta sequence
                              [AAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTNAGGCCGCAGCAAGGAGCGCGAAGTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCTGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGG-AACCTTTTGANTCTTGATTACATGCAAAAAAAAAAAAAAAGGGGGGGCCGCNA]

[+] EMBL AU063184             [AAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTNAGGCCGCAGCAAGGAGCGCGAAGTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCTGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGG AACCTTTTGANTCTTGATTACATGCAAAAAAAAAAAAAAAGGGGGGGCCGCNA]
[+] EMBL AU069240             [AAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTNAGGCCGCAGCAAGGAGCGCGAAGTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCTGTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCGCTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTNTTCATCACAGGAAACCTTTTGANTCTTGATTACATGCAAAAA                       ]


>consensus_12990#2 AAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTNAGGCCGCAGC AAGGAGCGCGAAGTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAACCAGCAGCCT GTGCGGTGAATTACTGCCCAGATTTTGGATGTCGAAAACTCCTAATACAATCCTTGTTCG CTCTGGACTCACAATAGACAATGTTGGTCCACTGTACTTATGTTGACTTGGGGTTGTAGG AGGTTCCTTCTGAACTGTTCATCACAGGAACCTTTTGANTCTTGATTACATGCAAAAAAA AAAAAAAAGGGGGGGCCGCNA



consensusID : consensus_12990#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence
                              [AAGCATGTCGGATATGATAGGATAAGTGATGAAGAGGCCAATTACAAATCCAAGCAGCCCGTGCGGGTGGAATNTGACTGCCCAGATTTTGGATGTCGAAAACTGCCTGAATGACAATCCTTGTTCGCTCTGGACTGCACAATAGACAATGTTGGGTGCCACTGGTGACTTGATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGATTACATGCATAAATACAGTACA]

[+] EMBL BQ907901             [AAGCATGTCGGATATGATAGGATAAGTGATGAAGAGGCCAATTACAAATCCAAGCAGCCCGTGCGGGTGGAATNTGACTGCCCAGATTTTGGATGTCGAAAACTGCCTGAATGACAATCCTTGTTCGCTCTGGACTGCACAATAGACAATGTTGGGTGCCACTGGTGACTTGATGTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGATTACATGCATAAATACAGTACA]


>consensus_12990#3 AAGCATGTCGGATATGATAGGATAAGTGATGAAGAGGCCAATTACAAATCCAAGCAGCCC GTGCGGGTGGAATNTGACTGCCCAGATTTTGGATGTCGAAAACTGCCTGAATGACAATCC TTGTTCGCTCTGGACTGCACAATAGACAATGTTGGGTGCCACTGGTGACTTGATGTTGAC TTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAATCTTGAT TACATGCATAAATACAGTACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12990#0      CCTGCCCACCGCCCTCCCTCTCCTCCTCCTCGACTACTAGAACCCAAAGAGGAGCACGAA 60
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      TCCGCCTCCTTCAATCCCCTCAAAAACCCTCGTTAACCCCCGCATCGATCTCGCCGGCAG 120
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      ATCGCGGAACTCGCAAAGATCGGCGGCTTTTCTTTTCTTTTCTTTTTCTTGCAGCAAAGA 180
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      TCGGATTTTCTGTCTCTTTTCATCGGGAGGAGATAGATGGCGGGGGGAGGCAGCAGGAGG 240
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      GGCGCGGCGGCNGCNGCNGANGAGGCGAGGATCGGCACCATCAACGTGTTCGCGGCGCTC 300
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      GACACGCTCAAGAGGAGGAATAAGCCTTCGTCGTCGTCGAACAAGCACTCGGAGAAAGAT 360
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      AAGGAGGTGCTGTGGGCCCCCGCGCCGCTCACCACCAGGTCCTGGGCCGACGTCGAGAAC 420
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      GACGACGACGACGACTACTTCGCCACCTCCGCGCCGCCGCGCCCCGTCTGGGGGACACAC 480
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      CACCACGCCGCTGACGCCCACGACGACGACCACGACGAGCAAGCTGCCCTTGAACAGGAA 540
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      CTTGAAAGTGAAGATGAGGAGGTTGATGATGATGCTGAGGATGAACACGAACATGAAACA 600
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      GAGGATGCTACCCCTGCTGAACCTGCAATGAATAAAGCTGCAGCTCCTCCTGCACCACCG 660
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      AAAGATACTGAAAGACAACTCTCCAAGAAGGAGTTAAAGAAAAAGGAACTGGAAGAGCTT 720
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      GATGCTATTTTGGCTGAGTTGGAACTTTCTAGCAAATCAAACAATGATGCTCAAAATGAA 780
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      ACAAACGGCAAGAAAGGTGCAGAGCAAGCTGCTGATGGAGAGAATAAAGAAGGTGCACCT 840
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      GCCCCTGCAGAGAGCAAGAGCTCAAAGAAGAAGAAAGCTAAGAAAGACAAGTCTGCAAAG 900
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------------------------------------------
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      GAGGCGAAAGAAACACAGGAACTTAATGGTGGGGTGGAAGAAGCTGCTGGTGCTGAGCCT 960
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      ------------------------AATGGTGGGGTGGAAGAAGCTGCTGGT-CTGAGCCT 35
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      GATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCAATGAAG 1020
consensus_12990#2      ------------------------------------------------------------
consensus_12990#1      GATGAAGAGGTAGCTTCTATGGATGTCAAGGATCGTATAAAGAAGGTAGCCTCA-TGAAG 94
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      AAAAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTGAGGCCGCA 1080
consensus_12990#2      --AAAGAAGTCAAGCAAAGAGATGGACACAGCAGCAAAGATTGCTGCATCTNAGGCCGCA 58
consensus_12990#1      AAAAAGAAGTCAAGCAA-GAGATGGACACAGCAGCAA-GATTGCTGCATCTGAGGCCGCA 152
consensus_12990#3      ------------------------------------------------------------
                                                                                   

consensus_12990#0      GCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAA---CCAG 1137
consensus_12990#2      GCAAGGAGCGCGAAG-TTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAA---CCAG 114
consensus_12990#1      GCAAGGAGCGCGAAGCTTGCAGCTGCGAAGAAGAAAGAGAAGAGCCATTACAA---CCAG 209
consensus_12990#3      -----AAGCATGTCGGATAT-GATAGGATAAGTGATGAAGAGGCCAATTACAAATCCAAG 54
                             ***  *  *  *   * *  **  *   * **  **  * *******   * **

consensus_12990#0      CAGCCTGTGCGGT--GAATT--ACTGCCCAGATTTTGGATGTCGAAAACT-CCTAAT--A 1190
consensus_12990#2      CAGCCTGTGCGGT--GAATT--ACTGCCCAGATTTTGGATGTCGAAAACT-CCTAAT--A 167
consensus_12990#1      CAGCCCGTGCGGT--GAATT--ACTGCCCAGATTTTGGATGTCGAAAACT-CCTAAT--A 262
consensus_12990#3      CAGCCCGTGCGGGTGGAATNTGACTGCCCAGATTTTGGATGTCGAAAACTGCCTGAATGA 114
                       ***** ******   ****   **************************** *** *   *

consensus_12990#0      CAATCCTTGTTCGCTCTGGACT-CACAATAGACAATGTTGGT--CCACTGT--ACTT-AT 1244
consensus_12990#2      CAATCCTTGTTCGCTCTGGACT-CACAATAGACAATGTTGGT--CCACTGT--ACTT-AT 221
consensus_12990#1      CAATCCTTGTTCGCTCTGGACT-CACA-TAGACAATGTTGGT--CCACTGT--ACTT-AT 315
consensus_12990#3      CAATCCTTGTTCGCTCTGGACTGCACAATAGACAATGTTGGGTGCCACTGGTGACTTGAT 174
                       ********************** **** *************   ******   **** **

consensus_12990#0      GTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAAT 1304
consensus_12990#2      GTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAA-CCTTTTGANT 280
consensus_12990#1      GTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAAT 375
consensus_12990#3      GTTGACTTGGGGTTGTAGGAGGTTCCTTCTGAACTGTTCATCACAGGAAACCTTTTGAAT 234
                       ************************************************* ******** *

consensus_12990#0      CTTGATTACATGCAAAAATACAGTACATTAAAAAAAAGA---------- 1343
consensus_12990#2      CTTGATTACATGCAAAAAAAAAAAAAAAGGGGGGGCCGCNA-------- 321
consensus_12990#1      CTTGATTACATGCATNCATACAGTACATTTCGCGCCTGGTTTCAAAAAA 424
consensus_12990#3      CTTGATTACATGCATAAATACAGTACA---------------------- 261
                       **************   * * *  * *                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)