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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2196 fasta sequence
[GCGCGGTGGTATAATATCTTCGCCATCGCGTGCCGGTTGCATTGCACCTCGTGATTGACCGTGCTACGACGTACGTACCATCATGGCTGCTACTATCCCCGCTTCTCCGGCCACTCTGCAGCCATGCAAGAAAAACGTGAGCGGCAGCATGCTCATCCGGTCGCCTCCGCGCCCTTGGAGGAGGAGGCTCCCCCAGCACGTTGTAATAGTTGATGCGAGCTCATCGTCTCGTGGCCCGAAGGCAGCGACGGGTGGCCGGCTCGAGACGTCGACTGACGCTGCAGCGGTGGCCGGGGAGGATGGAGACGTGATCCGGAGGCTGCAGAACGGACCGGACGTGCGTGGCGTTGCGCTGGAAGGGGAGAACGGCCGGGCCGTGGACCTCACGCCGCTGGCGGTCGAGGTGATCGCCGAGAGCTTCGGGGAGTGGCTGCGGGAGGAGCTCCAGCAGCTGGAGAGCGGGAGGGACGGCGGCGAGGTGCGGGTGTCCGTCGGAAGGGACCCCCGCCTGTCTGGCGCGCGGCTCGGCGCAGCACTGTTCGCGGGGCTGGCGAGGGCAGGGTGTTCCGTGTTCGACGTGGGGCTCGCCACCACGCCGGCTTGCTTCATGAGCACCAAGCTCCCACGGTTCAGCTATGACGCCTCCATCATGATGACTGCATCACATCTCCCATACACTCGCAACGGCCTCAAGTTCTTCATGAAGCGCGGTGGTCTCACGTCCGGCGAGGTGGAAGGGGTCTGCGACCGTGCGGCGCGGAAGTACGTGGCCAGGAAGATGGGCCTTGGCGGCGGGCGAGGCATGCCGCCGGTGGTGATGCGCGTCGACTTGATGAGCGCCTATG-CGCAGCACCTCCGCAACATAATCAAGGAGCGTGTTGCCCACCCGACACACTACGACACCCCCCTAAAGGGCTTCAAGGTGATCGTGAATGCCGGCAACGGCTGCGGAGGGTTCTTCACGTGGGACGTCCTGGAGAAGCTGGGAGCCGACACGACGGGGAGCCTCCACCTGGAGCCCGACGGCAAGTTCCCTCACCACATGCCCAACCCGGGGGACACGACCGCGATGTCCCTCACGCGCGATGCGGTCCTGGACCACGGCGCGGACCTCGGCGTGGTGTTCGACACCGACGTGGACCGCAGCGGCGTGGTGGACGCCACGGGCGCGGCCATCAACGGCGATCGGCTCATCGCGCTCATGTCCGCCATCGTGCTGGACGAGCACCCCGGCACGACGGTGGTCACGGACGCGCGGACCAGCGACGGGCTCACCCGCTTCATCCAGGCCAGGGGCGGCCACCACTGCCTCTACCGCGTCGGCTACCGAAACGTCATTGACAAGGGCGTGCAGCTCAACGCCGACGGCGTCGAGACGCACCTCATGATGGAGACCACCGGCCACGGCGCGCTCAAGGAGAACAACTTTCTCGACGACGGTGCGTACATGGTGGTGAAGATTATTATCGAGATGGTCAGGATGAGACTCGTGGGATTGGAGGGAAGCGTAGGAACACTCATCATGGACCTTGAGGAGCCGGCTGAGTCCAAGCTGATGAGGATGAACATTCTGGGAGAAGCCAAGTATGCAAAACAAAGGGGCACTCAAGCAGTCGAGACTTTTAGGA-ACCATATCCA-GGAAGGGAAACTAAATGGTTGGGTTCTCGATGACT-GTGGGGATTGCTCGGTTAGCCA-AGGAT-G-CCTCGTGGACACGAATGATGATCCTTTTGATGTTGA-TGCGTAC-ATGTA-CA-GGGCT-AAATTTTTTGATGAGT-ACAAGGGAGAACTGGGGTGGGTCCACATTCGC--CA-AAGTGTACATAACCCCAACATAGCAATAAATATGCAGTCTTCTAT-CCCTGGTGGATGCAAATCCATGGCAAAGGATCTTCTTGACAGGTATCTACTGACGAGTGGAGTCAATGAGTTTGTTGACATCACCGAAGTACAAAAGTTTGTAAAGTAGATATTATATT-ATAATCATTAGCTTTCTACAC-TTTGTATGTATAACTTTTACATCCCTACTGGAAGATCGAACAAGAGCTTTGCTCTTTCTGTAGAGTATGTAGAGACTATAATATTTTGATATCCTTTCAATAGAAACCTGCATTAGTTTAAGAAAGAATAATTACTAATGTTATGTTTATTAAGGNACAAAAACANGTTTA-TGATTCTATT-AACATACCAGATTC-GTTAAAAAAA]
[+] EMBL AK068502 [GCGCGGTGGTATAATATCTTCGCCATCGCGTGCCGGTTGCATTGCACCTCGTGATTGACCGTGCTACGACGTACGTACCATCATGGCTGCTACTATCCCCGCTTCTCCGGCCACTCTGCAGCCATGCAAGAAAAACGTGAGCGGCAGCATGCTCATCCGGTCGCCTCCGCGCCCTTGGAGGAGGAGGCTCCCCCAGCACGTTGTAATAGTTGATGCGAGCTCATCGTCTCGTGGCCCGAAGGCAGCGACGGGTGGCCGGCTCGAGACGTCGACTGACGCTGCAGCGGTGGCCGGGGAGGATGGAGACGTGATCCGGAGGCTGCAGAACGGACCGGACGTGCGTGGCGTTGCGCTGGAAGGGGAGAACGGCCGGGCCGTGGACCTCACGCCGCTGGCGGTCGAGGTGATCGCCGAGAGCTTCGGGGAGTGGCTGCGGGAGGAGCTCCAGCAGCTGGAGAGCGGGAGGGACGGCGGCGAGGTGCGGGTGTCCGTCGGAAGGGACCCCCGCCTGTCTGGCGCGCGGCTCGGCGCAGCACTGTTCGCGGGGCTGGCGAGGGCAGGGTGTTCCGTGTTCGACGTGGGGCTCGCCACCACGCCGGCTTGCTTCATGAGCACCAAGCTCCCACGGTTCAGCTATGACGCCTCCATCATGATGACTGCATCACATCTCCCATACACTCGCAACGGCCTCAAGTTCTTCATGAAGCGCGGTGGTCTCACGTCCGGCGAGGTGGAAGGGGTCTGCGACCGTGCGGCGCGGAAGTACGTGGCCAGGAAGATGGGCCTTGGCGGCGGGCGAGGCATGCCGCCGGTGGTGATGCGCGTCGACTTGATGAGCGCCTATG CGCAGCACCTCCGCAACATAATCAAGGAGCGTGTTGCCCACCCGACACACTACGACACCCCCCTAAAGGGCTTCAAGGTGATCGTGAATGCCGGCAACGGCTGCGGAGGGTTCTTCACGTGGGACGTCCTGGAGAAGCTGGGAGCCGACACGACGGGGAGCCTCCACCTGGAGCCCGACGGCAAGTTCCCTCACCACATGCCCAACCCGGGGGACACGACCGCGATGTCCCTCACGCGCGATGCGGTCCTGGACCACGGCGCGGACCTCGGCGTGGTGTTCGACACCGACGTGGACCGCAGCGGCGTGGTGGACGCCACGGGCGCGGCCATCAACGGCGATCGGCTCATCGCGCTCATGTCCGCCATCGTGCTGGACGAGCACCCCGGCACGACGGTGGTCACGGACGCGCGGACCAGCGACGGGCTCACCCGCTTCATCCAGGCCAGGGGCGGCCACCACTGCCTCTACCGCGTCGGCTACCGAAACGTCATTGACAAGGGCGTGCAGCTCAACGCCGACGGCGTCGAGACGCACCTCATGATGGAGACCACCGGCCACGGCGCGCTCAAGGAGAACAACTTTCTCGACGACGGTGCGTACATGGTGGTGAAGATTATTATCGAGATGGTCAGGATGAGACTCGTGGGATTGGAGGGAAGCGTAGGAACACTCATCATGGACCTTGAGGAGCCGGCTGAGTCCAAGCTGATGAGGATGAACATTCTGGGAGAAGCCAAGTATGCAAAACAAAGGGGCACTCAAGCAGTCGAGACTTTTAGGA ACCATATCCA GGAAGGGAAACTAAATGGTTGGGTTCTCGATGACT GTGGGGATTGCTCGGTTAGCCA AGGAT G CCTCGTGGACACGAATGATGATCCTTTTGATGTTGA TGCGTAC ATGTA CA GGGCT AAATTTTTTGATGAGT ACAAGGGAGAACTGGGGTGGGTCCACATTCGC CA AAGTGTACATAACCCCAACATAGCAATAAATATGCAGTCTTCTAT CCCTGGTGGATGCAAATCCACGGCAAAGGATCTTCTTGACAGGTATCTACTGACGAGTGGAGTCAATGAGTTTGTTGACATCACCGAAGTACAAAAGTTTGTAAAGTAGATATTATATT ATAATCATTAGCTTTCTACAC TTTGTATGTATAACTTTTACATCCCTACTGGAAGATCGAACAAGAGCTTTGCTCTTTCTGTAGAGTATGTAGAGACTATAATATTTTGATATCCTTTCAATAGAAACCT ]
[+] EMBL CB683878 [ TCGCCATCGCGTGCCGGTTGCATTGCACCTCGTGATTGACCGTGCTACGACGTACGTACCATCATGGCTGCTACTATCCCCGCTTCTCCGGCCACTCTGCAGCCATGCAAGAAAAACGTGAGCGGCAGCATGCTCATCCGGTCGCCTCCGCGCCCTTGGAGGAGGAGGCTCCCCCAGCACGTTGTAATAGTTGATGCGAGCTCATCGTCTCGTGGCCCGAAGGCAGCGACGGGTGGCCGGCTCGAGACGTCGACTGACGCTGCAGCGGTGGCCGGGGAGGATGGAGACGTGATCCGGAGGCTGCAGAACGGACCGGACGTGCGTGGCGTTGCGCTGGAAGGGGAGAACGGCCGGGCCGTGGACCTCACGCCGCTGGCGGTCGAGGTGATCGCCGAGAGCTTCGGGGAGTGGCTGCGGGAGGAGCTCCAGCAGCTGGAGAGCGGGAGGGACGGCGGCGAGGTGCGGGTGTCCGTCGGAAGGGACCCCCGCCTGTCTGGCGCGCGGCTCGGCGCAGCACTGTTCGCGGGGCTGGCGAGGGCAGGGTGTTCCGTGTTCGACGTGGGGCTCGCCACCACGCCGGCTTGCTTCATGAGCACCAAGCTCCCACGGTTCAGCTATGACGCCTCCATCATGATGACTGCATCACATCTCCCATACACTCGCAACGGCCTCAAGTTCTTCATGAAGCGCGGTGGTCTCACGTCCGGCGAGGTGGAAGGGGTCTGCGACCGTGCGGCGCGGAAGTACGTGGCCAGGAAGATGGGCCTTGGCGGCG ]
[+] EMBL CB640970 [ CATCATGGCTGCTACTATCCCCGCTTCTCCGGCCACTCTGCAGCCATGCAAGAAAAACGTGAGCGGCAGCATGCTCATCCGGTCGCCTCCGCGCCCTTGGAGGAGGAGGCTCCCCCAGCACGTTGTAATAGTTGATGCGAGCTCATCGTCTCGTGGCCCGAAGGCAGCGACGGGTGGCCGGCTCGAGACGTCGACTGACGCTGCAGCGGTGGCCGGGGAGGATGGAGACGTGATCCGGAGGCTGCAGAACGGACCGGACGTGCGTGGCGTTGCGCTGGAAGGGGAGAACGGCCGGGCCGTGGACCTCACGCCGCTGGCGGTCGAGGTGATCGCCGATAGCTTCCGGGAGTGGCTGCGGGAGGAGCTCCAGCAG ]
[+] EMBL CB618217 [ ATCATGCCCTTAAGGATCCCCGCTTCTCCGGCCACTCTGCAGCCATGCAAGAAAAACGTGAGCGGCAGCATGCTCATCCGGCCGCCTCCGCGCACTTGGAGGAGGAGGCTCCCCCAGCACGTTGTAATAGCTGATGCGAGCTCATCGTCTCGTGGCCCGAAGGCAGCGACGGGTGGCCGGCTCGAGACGTCGACTGACGCTGCAGCGGTGGCCGGGGAGGATGGAGACGTGATCCGGAGGCTGCAGAACGGACCGGACGTGCGTGGCGTTGCGCTGGAAGGGGAGAACGGCCGGGCCGTGGACCTCACGCCGCTGGCGGTCGAGGTGATCGCCGAGAGCTTCGGGGAGTGGCTGCGGGAGGAGCTCCAGCAGCTGGAGAGCGGGAGGGACGGCGGCGAGGTGCGGGTGTCCGTCGGAAGGGACCCCCGCCTGTCTGGCGCGCGGCTCGGCGCAGCACTGTTCGCGGGGCTGGCGAGGGCAGGGTGTTCCGTGTTCGACGTGGGGCTCGCCACCACGCCGGCTTGCTTCATGAGCACCAAGCTCCCACGGTTCAGCTATGACGCCTCCATCATGATGACTGCATCACATCTCCCATACACTCGCAACGGCCTCAAGTTATTCATGAAGCGCGGTGGTCTCACGTCCGGCGAGGTGGAAGGGGTCTGCGACCGTGCGGCGCGGAAGTACGTGGCCATGAAGATGGGCCTTGGCGGCGGGCGAGGCATGCCGCCGGTGGTGATGCGCGTCGACTTGATGAGCGCCTATGCCGCA CA CTCCGCAACATAATCAAGGAGCGTGTTGCCCACCCGA ]
[+] EMBL BI812945 [ atcgcAAAC AAGGGGCACTCAA CCGTCGAGACTTTTAGGACACCATATCCACGGAAGGGAAACTAAATGGTTGGGTTCTCGATGACT GTGGGGATTGCTCGGTTAGCCA AGGAT GCCCTCGTGGACCCGAATGATGATCCTTTTGATGTTGACTGCGTAC ATGTACCACGGGCT AAATTTTTTGATGAGT AC AGGGAGAACTGGGGTGGGTCCACATTCGC CC AAGTGTACATAACCCCTACATAGCAATAAATATCCAGTCTTCTAT CCCTGGTGGATGCAAATCCATGGCCAAGGATCTTCTTGACAGGTATCTACTGACGAGTGGAGTCAATGAGTTTGTTGACATCACCGAAGTACCAAAGTTTGTAAAGTAGATATTATATT ATAATCATTAGCTTTCTAC C TTTGTATGTATAACTTTTACATCCCTACTGGAAGATCGAAC AGAGCTTTGCTCTTTCTGTAGAGTATGTAGAGACTATAATATTTTGATATCCTTTCCATAGAAACCTGCCTTAGTTTAAAAAAa ]
[+] EMBL BI811770 [ ACTTTTAGGA ACCATATCCACGGAAGGGAAACTAAAT GTTGGGTTCTCGATGACT GTGGGGATTGCTCGGTTACCCA AGGAT G CCTCGTGGACACGAATGATGATCCTTTTGATGTTGA TGCGTAC ATGTA CA GGGCT AAATTTTTTGATGAGT ACAAGGGAGAACTGGGGTGGGTCCACATTCGC CACAAGTGTACATAACCCCCACATAGCAATAAATATGCAGTCTTCTAT CCCTGGTGGATGCAAATCCATGGCAAAGGATCTTCTTGACAGGTATCTACTGACGAGTGGAGTCAATGAGTTTGTTGACATCACCGAAGTACCAAAGTTTGTAAAGTAGATATTATATT ATAATCATTAGCTTTCTACAC TTTGTATGTATAACTTTTACATCCCTACTGGAAGATCGAACAAGAGCTTTGCTCTTGCTGTAGAGTATGTAGAGACTATAATATTTTGATATCCTTTCAATAGAAACCTGCATTAGTTTAAGAAAGAATAAaaaaaaaa ]
[+] EMBL BQ907802 [ CTCGATGACTGGTGGGGATTGCTCGGTTACCCATAGGATGG CCTCGTGGACACGAATGATGATCCTTTGGATGTTGA TGCGTACAATGTA CA GGGCT AAATTTTTTGATGAGT ACAAGGGAGAACTGGGGTGGGTCCACATTCGC CA AAGTGTACATAACCCCGACATAGC ATAAATAT CAGTCTTCTATCCCCTGGTGGATGCAAATCCATGGCAAAGGATCTTCTTGACAGGTATCTACTGACGAGTGGAGTCAATGAGTTTGTTGACATCACCGAAGTACAAAAGTTTGTAAAGTAGATATTATATTGATAATCATTAGCTTTCTACAC TTTGTATGTATAACTTTTACATCCCTACTGGAAGATCGAACAAGAGCTTTGCTCTTTCTGTAGAGTATGTAGAGACTATAATATNNGGATATCCNTTCAATAGAAACCGCCATTAGTTTAAGAAAGAATAATTACTAATGTTATGTTTATTAAGGNACAAAAACANGTTTA TGATTCTATT AACATACCAGATTC GTTAAAAA ]
[+] EMBL BI812819 [ A CA GGGCTAAAATTTTTTGATGAGTAACAAGGGAGAACTGGGGTGGGTCCACATTCGCCACA AAGTGTACATAACCCCAACATA CAATAAATAT CAGTCTTCTATCCCCTGGTGGAT CAAATCCATGGCAAAGGATCTTCTTGACAGGTATCTACTGACGAGTGGAGTCAATGAGTTTGTTGACATCACCGAAGTACAAAAGTTTGTAAAGTAGATATTATATT ATAATCATTAGCTTTCTACAC TTTGTATGTATAACTTTTACATCCCTACTGGAAGATCGAACAAGAGCTTTGCTCTTTCTGTAGAGTATGTAGAGACTATAATATTTTGATATCCTTTCAATAGAAACCTGCATTAGTTTAAAAAAAAA ]
[+] EMBL BQ907569 [ AGC ATAAATATGCAGTCTTCTAT CCCTGGTGGATGCAAATCCATGGCAAAGGATCTTCTTGACAGGTATCTACTGACGAGTGGAGTCAATGAGTTTGTTGACATCACCGAAGTAC AAAGTTTGTAAAGTAGATATTATATT ATAATCATTAGCTTTCTACACGTTTGTATGTATAACTTTTACATCCCTACTGGAAGATCGAACAAGAGCTTTGCTCTTTCTGTAGAGTATGTAGAGACTATAATATTTTGATATCCTTTCAATAGAAACCTGCATTAGTTTAAGAAAGAATAATTACTAATGTTATGTTTATTAATGTACATATACATGTTTATTGATTCTATTAAACATACAAGATTCAGTTAAAAAAA]
consensusID : consensus_12991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1426 fasta sequence
[GCATGCTCATCCGGTCGCCTCCGCGCCCTTGGAGGAGGAGGCTCCCCCAGCACGTTGTAATAGTTGATGCGAGCTCATCGTCTCGTGGCCCGAAGGCAGCGACGGGTGGCCGGCTCGAGACGTCGACTGACGCTGCAGCGGTGGCCGGGGAGGATGGAGACGTGATCCGGAGGCTGCAGAACGGACCGGACGTGCGTGGCGTTGCGCTGGAAGGGGAGAACGGCCGGGCCGTGGACCTCACGCCGCTGGCGGTCGAGGTGATCGCCGAGAGCTTCGGGGAGTGGCTGCGGGAGGAGCTCCAGCAGCTGGAGAGCGGGAGGGACGGCGGCGAGGTGCGGGTGTCCGTCGGAAGGGACCCCCGCCTGTCTGGCGCGCGGCTCGGCGCAGCACTGTTCGCGGGGCTGGCGAGGGCAGGGTGTTCCGTGTTCGACGTGGGGCTCGCCACCACGCCGGCTTGCTTCATGAGCACCAAGCTCCCACGGTTCAGCTATGACGCCTCCATCATGATGACTGCATCACATCTCCCATACACTCGCAACGGCCTCAAGTTCTTCATGAAGCGCGGTGGTCTCACGTCCGGCGAGGTGGAAGGGGTCTGCGACCGTGCGGCGCGGAAGTACGTGGCCAGGAAGATGGGCCTTGGCGGCGGGCGAGGCATGCCGCCGGTGGTGATGCGCGTCGACTTGATGAGCGCCTATGCGCAGCACCTCCGCAACATAATCAAGGAGCGTGTTGCCCACCCGACACACTACGACACCCCCCTAAAGGGCTTCAAGGTGATCGTGAATGCCGGCAACGGCTGCGGAGGGTTCTTCACGTGGGACGTCCTGGAGAAGCTGGGAGCCGACACGACGGGGAGCCTCCACCTGGAGCCCGACGGCAAGTTCCCTCACCACATGCCCAACCCGGAGGACACGACCGCGATGTCCCTCACGCGCGATGCGGTCCTGGACCACGGCGCGGACCTCGGCGTGGTGTTCGACACCGACGTGGACCGCAGCGGCGTGGTGGACGCCACGGGCGCGGCCATCAACGGCGATCGGCTCATCGCGCTCATGTCCGCCATCGTGCTGGACGAGCACCCCGGCACGACGGTGGTCACGGACGCGCGGACCAGCGACGGGCTCACCCGCTTCATCCAGGCCAGGGGCGGCCACCACTGCCTCTACCGCGTCGGCTACCGAAACGTCATTGACAAGGGCGTGCAGCTCAACGCCGACGGCGTCGAGACGCACCTCATGATGGAGACCACCGGCCACGGCGCGCTCAAGGAGAACAACTTTCTCGACGACGGTACGCCTAGCTACGTCCATATCCACACATACATACGTCATCTGCTTGGAGTCTTAATAGCATATATAACGTCGAATTTAACAAGATTTACAAATGTTGATCTCTTGTACTACATCCTATATATATGCTAATT]
[+] EMBL AK065566 [GCATGCTCATCCGGTCGCCTCCGCGCCCTTGGAGGAGGAGGCTCCCCCAGCACGTTGTAATAGTTGATGCGAGCTCATCGTCTCGTGGCCCGAAGGCAGCGACGGGTGGCCGGCTCGAGACGTCGACTGACGCTGCAGCGGTGGCCGGGGAGGATGGAGACGTGATCCGGAGGCTGCAGAACGGACCGGACGTGCGTGGCGTTGCGCTGGAAGGGGAGAACGGCCGGGCCGTGGACCTCACGCCGCTGGCGGTCGAGGTGATCGCCGAGAGCTTCGGGGAGTGGCTGCGGGAGGAGCTCCAGCAGCTGGAGAGCGGGAGGGACGGCGGCGAGGTGCGGGTGTCCGTCGGAAGGGACCCCCGCCTGTCTGGCGCGCGGCTCGGCGCAGCACTGTTCGCGGGGCTGGCGAGGGCAGGGTGTTCCGTGTTCGACGTGGGGCTCGCCACCACGCCGGCTTGCTTCATGAGCACCAAGCTCCCACGGTTCAGCTATGACGCCTCCATCATGATGACTGCATCACATCTCCCATACACTCGCAACGGCCTCAAGTTCTTCATGAAGCGCGGTGGTCTCACGTCCGGCGAGGTGGAAGGGGTCTGCGACCGTGCGGCGCGGAAGTACGTGGCCAGGAAGATGGGCCTTGGCGGCGGGCGAGGCATGCCGCCGGTGGTGATGCGCGTCGACTTGATGAGCGCCTATGCGCAGCACCTCCGCAACATAATCAAGGAGCGTGTTGCCCACCCGACACACTACGACACCCCCCTAAAGGGCTTCAAGGTGATCGTGAATGCCGGCAACGGCTGCGGAGGGTTCTTCACGTGGGACGTCCTGGAGAAGCTGGGAGCCGACACGACGGGGAGCCTCCACCTGGAGCCCGACGGCAAGTTCCCTCACCACATGCCCAACCCGGAGGACACGACCGCGATGTCCCTCACGCGCGATGCGGTCCTGGACCACGGCGCGGACCTCGGCGTGGTGTTCGACACCGACGTGGACCGCAGCGGCGTGGTGGACGCCACGGGCGCGGCCATCAACGGCGATCGGCTCATCGCGCTCATGTCCGCCATCGTGCTGGACGAGCACCCCGGCACGACGGTGGTCACGGACGCGCGGACCAGCGACGGGCTCACCCGCTTCATCCAGGCCAGGGGCGGCCACCACTGCCTCTACCGCGTCGGCTACCGAAACGTCATTGACAAGGGCGTGCAGCTCAACGCCGACGGCGTCGAGACGCACCTCATGATGGAGACCACCGGCCACGGCGCGCTCAAGGAGAACAACTTTCTCGACGACGGTACGCCTAGCTACGTCCATATCCACACATACATACGTCATCTGCTTGGAGTCTTAATAGCATATATAACGTCGAATTTAACAAGATTTACAAATGTTGATCTCTTGTACTACATCCTATATATATGCTAATT]
[+] EMBL BI118819 [ GGAAGATGGGCCTTGGCGGCGGGCGAGGCATGCCGCCGGTGGTGATGCGCGTCGACTTGATGAGCGCCTATGCGCAGCACCTCCGCAACATAATCAAGGAGCGTGTTGCCCACCCGACACACTACGACACCCCCCTAAAGGGCTTCAAGGTGATCGTGAATGCCGGCAACGGCTGCGGAGGGTTCTTCACGTGGGACGTCCTGGAGAAGCTGGGAGCCGACACGACGGGGAGCCTCCACCTGGAGCCCGACGGCAAGTTCCCTCACCACATGCCCAACCCGGAGGACACGACCGCGACGTCCCTCACGCGCGATGCGGTCCTGGACCACGGCGCGGACCTCGGCGTGGTGTTCGACACCGACGTGGACCGCAGCGGCGTGGTGGACGCCACGGGAGCGGCCATCAACGGCGATCGGCTCATCGCGCTCATGTCCGCCATCGTGCTGGACGAGCACCCCGGCACGACGGTGGTCACGGACGCGCGGACCAGCGACGGGCTCACCCGCTTCATCCAGGCCAGGGGCGGCCACCACTGCCTCTACCGCGTCGGCTACCGAAACGTCATTGACAAGGGCGTGCAGCTCAACGCCGACGGC ]
consensusID : consensus_12991#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence
[GCGTGGTGTTCGACACCGACGTGGACCGCAGCGGCGTGGTGGACGCCACGGGAGCGGCCATCAACGGCGATCGGCTCATCGCGCTCATGTCCGCCATCGTGCTGGACGAGCACCCCGGCACGACGGTGGTCACGGACGCGCGGACCAGCGACGGGCTCACCCGCTTCATCCAGGCCAGGGGCGGCCACCACTGCCTCTACCGCGTCGGCTACCGAAACGTCATTGACAAGGGCGTGCAGCTCAACGCCGACGGCGTCGAGACGCACCTCATGATGGAGACCACCGGCCACGGCGCGCTCAAGGAGAACAACTTTCTCGACGACGGTGCGTACATAGTGGTGAAGATTATTATCGAGATGGTCAGGATGAGACTCGTGGGATTGGAGGGAAGCGTAGGAACACTCATCATGGACCTCGAGGAGCCGGCTGAGTCCAAGCTGATGAGGATGAACATTCTGGGAGAAGCCAAGTATGCAAAACAAAGGGGCACTCAAGCAGTCGAGACTTTTAGGAACCATATCCAGGAAGGGAAACTAAATGGTTGGGTTCTCGATGACTGTGGGGATTGCTCGGTTAGCCAAGGATGCCTCGTGGACACGAATGATGATCCTTTTGATGTTGATGCGTACATGTACAGGTATGCGAGTGCTTGCATTGTTGCACATCTCAATGATTATATTCTATTTCTTTTTCCTATATTAACTTTATTTAAGCTTCTTTGGTTCCTTTTTATTACGGGAAGCTTTCAATTGATTGGTAAATAGTAATTATTTTTCAACTGAACTCAATGTGAACTAT]
[-] EMBL CB618218 [GCGTGGTGTTCGACACCGACGTGGACCGCAGCGGCGTGGTGGACGCCACGGGAGCGGCCATCAACGGCGATCGGCTCATCGCGCTCATGTCCGCCATCGTGCTGGACGAGCACCCCGGCACGACGGTGGTCACGGACGCGCGGACCAGCGACGGGCTCACCCGCTTCATCCAGGCCAGGGGCGGCCACCACTGCCTCTACCGCGTCGGCTACCGAAACGTCATTGACAAGGGCGTGCAGCTCAACGCCGACGGCGTCGAGACGCACCTCATGATGGAGACCACCGGCCACGGCGCGCTCAAGGAGAACAACTTTCTCGACGACGGTGCGTACATAGTGGTGAAGATTATTATCGAGATGGTCAGGATGAGACTCGTGGGATTGGAGGGAAGCGTAGGAACACTCATCATGGACCTCGAGGAGCCGGCTGAGTCCAAGCTGATGAGGATGAACATTCTGGGAGAAGCCAAGTATGCAAAACAAAGGGGCACTCAAGCAGTCGAGACTTTTAGGAACCATATCCAGGAAGGGAAACTAAATGGTTGGGTTCTCGATGACTGTGGGGATTGCTCGGTTAGCCAAGGATGCCTCGTGGACACGAATGATGATCCTTTTGATGTTGATGCGTACATGTACAGGTATGCGAGTGCTTGCATTGTTGCACATCTCAATGATTATATTCTATTTCTTTTTCCTATATTAACTTTATTTAAGCTTCTTTGGTTCCTTTTTATTACGGGAAGCTTTCAATTGATTGGTAAATAGTAATTATTTTTCAACTGAACTCAATGTGAACTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12991#0 GCGCGGTGGTATAATATCTTCGCCATCGCGTGCCGGTTGCATTGCACCTCGTGATTGACC 60
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 GTGCTACGACGTACGTACCATCATGGCTGCTACTATCCCCGCTTCTCCGGCCACTCTGCA 120
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 GCCATGCAAGAAAAACGTGAGCGGCAGCATGCTCATCCGGTCGCCTCCGCGCCCTTGGAG 180
consensus_12991#1 --------------------------GCATGCTCATCCGGTCGCCTCCGCGCCCTTGGAG 34
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 GAGGAGGCTCCCCCAGCACGTTGTAATAGTTGATGCGAGCTCATCGTCTCGTGGCCCGAA 240
consensus_12991#1 GAGGAGGCTCCCCCAGCACGTTGTAATAGTTGATGCGAGCTCATCGTCTCGTGGCCCGAA 94
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 GGCAGCGACGGGTGGCCGGCTCGAGACGTCGACTGACGCTGCAGCGGTGGCCGGGGAGGA 300
consensus_12991#1 GGCAGCGACGGGTGGCCGGCTCGAGACGTCGACTGACGCTGCAGCGGTGGCCGGGGAGGA 154
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 TGGAGACGTGATCCGGAGGCTGCAGAACGGACCGGACGTGCGTGGCGTTGCGCTGGAAGG 360
consensus_12991#1 TGGAGACGTGATCCGGAGGCTGCAGAACGGACCGGACGTGCGTGGCGTTGCGCTGGAAGG 214
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 GGAGAACGGCCGGGCCGTGGACCTCACGCCGCTGGCGGTCGAGGTGATCGCCGAGAGCTT 420
consensus_12991#1 GGAGAACGGCCGGGCCGTGGACCTCACGCCGCTGGCGGTCGAGGTGATCGCCGAGAGCTT 274
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 CGGGGAGTGGCTGCGGGAGGAGCTCCAGCAGCTGGAGAGCGGGAGGGACGGCGGCGAGGT 480
consensus_12991#1 CGGGGAGTGGCTGCGGGAGGAGCTCCAGCAGCTGGAGAGCGGGAGGGACGGCGGCGAGGT 334
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 GCGGGTGTCCGTCGGAAGGGACCCCCGCCTGTCTGGCGCGCGGCTCGGCGCAGCACTGTT 540
consensus_12991#1 GCGGGTGTCCGTCGGAAGGGACCCCCGCCTGTCTGGCGCGCGGCTCGGCGCAGCACTGTT 394
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 CGCGGGGCTGGCGAGGGCAGGGTGTTCCGTGTTCGACGTGGGGCTCGCCACCACGCCGGC 600
consensus_12991#1 CGCGGGGCTGGCGAGGGCAGGGTGTTCCGTGTTCGACGTGGGGCTCGCCACCACGCCGGC 454
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 TTGCTTCATGAGCACCAAGCTCCCACGGTTCAGCTATGACGCCTCCATCATGATGACTGC 660
consensus_12991#1 TTGCTTCATGAGCACCAAGCTCCCACGGTTCAGCTATGACGCCTCCATCATGATGACTGC 514
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 ATCACATCTCCCATACACTCGCAACGGCCTCAAGTTCTTCATGAAGCGCGGTGGTCTCAC 720
consensus_12991#1 ATCACATCTCCCATACACTCGCAACGGCCTCAAGTTCTTCATGAAGCGCGGTGGTCTCAC 574
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 GTCCGGCGAGGTGGAAGGGGTCTGCGACCGTGCGGCGCGGAAGTACGTGGCCAGGAAGAT 780
consensus_12991#1 GTCCGGCGAGGTGGAAGGGGTCTGCGACCGTGCGGCGCGGAAGTACGTGGCCAGGAAGAT 634
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 GGGCCTTGGCGGCGGGCGAGGCATGCCGCCGGTGGTGATGCGCGTCGACTTGATGAGCGC 840
consensus_12991#1 GGGCCTTGGCGGCGGGCGAGGCATGCCGCCGGTGGTGATGCGCGTCGACTTGATGAGCGC 694
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 CTATGCGCAGCACCTCCGCAACATAATCAAGGAGCGTGTTGCCCACCCGACACACTACGA 900
consensus_12991#1 CTATGCGCAGCACCTCCGCAACATAATCAAGGAGCGTGTTGCCCACCCGACACACTACGA 754
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 CACCCCCCTAAAGGGCTTCAAGGTGATCGTGAATGCCGGCAACGGCTGCGGAGGGTTCTT 960
consensus_12991#1 CACCCCCCTAAAGGGCTTCAAGGTGATCGTGAATGCCGGCAACGGCTGCGGAGGGTTCTT 814
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 CACGTGGGACGTCCTGGAGAAGCTGGGAGCCGACACGACGGGGAGCCTCCACCTGGAGCC 1020
consensus_12991#1 CACGTGGGACGTCCTGGAGAAGCTGGGAGCCGACACGACGGGGAGCCTCCACCTGGAGCC 874
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 CGACGGCAAGTTCCCTCACCACATGCCCAACCCGGGGGACACGACCGCGATGTCCCTCAC 1080
consensus_12991#1 CGACGGCAAGTTCCCTCACCACATGCCCAACCCGGAGGACACGACCGCGATGTCCCTCAC 934
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 GCGCGATGCGGTCCTGGACCACGGCGCGGACCTCGGCGTGGTGTTCGACACCGACGTGGA 1140
consensus_12991#1 GCGCGATGCGGTCCTGGACCACGGCGCGGACCTCGGCGTGGTGTTCGACACCGACGTGGA 994
consensus_12991#2 -----------------------------------GCGTGGTGTTCGACACCGACGTGGA 25
*************************
consensus_12991#0 CCGCAGCGGCGTGGTGGACGCCACGGGCGCGGCCATCAACGGCGATCGGCTCATCGCGCT 1200
consensus_12991#1 CCGCAGCGGCGTGGTGGACGCCACGGGCGCGGCCATCAACGGCGATCGGCTCATCGCGCT 1054
consensus_12991#2 CCGCAGCGGCGTGGTGGACGCCACGGGAGCGGCCATCAACGGCGATCGGCTCATCGCGCT 85
*************************** ********************************
consensus_12991#0 CATGTCCGCCATCGTGCTGGACGAGCACCCCGGCACGACGGTGGTCACGGACGCGCGGAC 1260
consensus_12991#1 CATGTCCGCCATCGTGCTGGACGAGCACCCCGGCACGACGGTGGTCACGGACGCGCGGAC 1114
consensus_12991#2 CATGTCCGCCATCGTGCTGGACGAGCACCCCGGCACGACGGTGGTCACGGACGCGCGGAC 145
************************************************************
consensus_12991#0 CAGCGACGGGCTCACCCGCTTCATCCAGGCCAGGGGCGGCCACCACTGCCTCTACCGCGT 1320
consensus_12991#1 CAGCGACGGGCTCACCCGCTTCATCCAGGCCAGGGGCGGCCACCACTGCCTCTACCGCGT 1174
consensus_12991#2 CAGCGACGGGCTCACCCGCTTCATCCAGGCCAGGGGCGGCCACCACTGCCTCTACCGCGT 205
************************************************************
consensus_12991#0 CGGCTACCGAAACGTCATTGACAAGGGCGTGCAGCTCAACGCCGACGGCGTCGAGACGCA 1380
consensus_12991#1 CGGCTACCGAAACGTCATTGACAAGGGCGTGCAGCTCAACGCCGACGGCGTCGAGACGCA 1234
consensus_12991#2 CGGCTACCGAAACGTCATTGACAAGGGCGTGCAGCTCAACGCCGACGGCGTCGAGACGCA 265
************************************************************
consensus_12991#0 CCTCATGATGGAGACCACCGGCCACGGCGCGCTCAAGGAGAACAACTTTCTCGACGACGG 1440
consensus_12991#1 CCTCATGATGGAGACCACCGGCCACGGCGCGCTCAAGGAGAACAACTTTCTCGACGACGG 1294
consensus_12991#2 CCTCATGATGGAGACCACCGGCCACGGCGCGCTCAAGGAGAACAACTTTCTCGACGACGG 325
************************************************************
consensus_12991#0 TGCGTACATGGTGGTGAAGATTATTATCGAGATGGTCAGGATGAGACTCGTGGGATTGGA 1500
consensus_12991#1 TACGCCTA-----GCTACGTCCAT-ATCCACACATACA---TACG--TCATCTGCTTGGA 1343
consensus_12991#2 TGCGTACATAGTGGTGAAGATTATTATCGAGATGGTCAGGATGAGACTCGTGGGATTGGA 385
* ** * * * * ** *** * * ** * * ** * * *****
consensus_12991#0 GGGAAGCGTAGGAACACTCATCATG--GACCTTGAGGAGCCGGCTGAGTCCAAGCTGATG 1558
consensus_12991#1 GT----CTTAATAGCATATATAACGTCGAATTTAACAAGATTTACAAATGTTGATCTCTT 1399
consensus_12991#2 GGGAAGCGTAGGAACACTCATCATG--GACCTCGAGGAGCCGGCTGAGTCCAAGCTGATG 443
* * ** * ** ** * * ** * * ** * * *
consensus_12991#0 AGGATGAACATTCTGGG-AGAAGCCAAGTATGCAAAACAAAGGGGCACTCAAGCAGTCGA 1617
consensus_12991#1 GTACT--ACATCCTATATATATGCTAATT------------------------------- 1426
consensus_12991#2 AGGATGAACATTCTGGG-AGAAGCCAAGTATGCAAAACAAAGGGGCACTCAAGCAGTCGA 502
* **** ** * * ** ** *
consensus_12991#0 GACTTTTAGGAACCATATCCAGGAAGGGAAACTAAATGGTTGGGTTCTCGATGACTGTGG 1677
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 GACTTTTAGGAACCATATCCAGGAAGGGAAACTAAATGGTTGGGTTCTCGATGACTGTGG 562
consensus_12991#0 GGATTGCTCGGTTAGCCAAGGATGCCTCGTGGACACGAATGATGATCCTTTTGATGTTGA 1737
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 GGATTGCTCGGTTAGCCAAGGATGCCTCGTGGACACGAATGATGATCCTTTTGATGTTGA 622
consensus_12991#0 TGCGTACATGTACAGGGCTAAATTTTTTGATGAGTACAAGGGAGAACTGGGGTGGGTCCA 1797
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 TGCGTACATGTACAGGTATGCGAGTGCTTGCATTGTTGCACATCTCAATGATTATATTCT 682
consensus_12991#0 CATTCGCCAAAGTGTACATAACCCCAACATAGCAATAAATATGCAGTCTTCTATCCCTGG 1857
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 ATTTCTTTTTCCTATATTAACTTTATTTAAGCTTCTTTGGTTCCTTTTTATTACGGGAAG 742
consensus_12991#0 TGGATGCAAATCCATGGCAAAGGATCTTCTTGACAGGTATCTACTGACGAGTGGAGTCAA 1917
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 CTTTCAATTGATTGGTAAATAGTAATTATTTTTCAACTGAACTCAATGTGAACTAT---- 798
consensus_12991#0 TGAGTTTGTTGACATCACCGAAGTACAAAAGTTTGTAAAGTAGATATTATATTATAATCA 1977
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 TTAGCTTTCTACACTTTGTATGTATAACTTTTACATCCCTACTGGAAGATCGAACAAGAG 2037
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 CTTTGCTCTTTCTGTAGAGTATGTAGAGACTATAATATTTTGATATCCTTTCAATAGAAA 2097
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 CCTGCATTAGTTTAAGAAAGAATAATTACTAATGTTATGTTTATTAAGGNACAAAAACAN 2157
consensus_12991#1 ------------------------------------------------------------
consensus_12991#2 ------------------------------------------------------------
consensus_12991#0 GTTTATGATTCTATTAACATACCAGATTCGTTAAAAAAA 2196
consensus_12991#1 ---------------------------------------
consensus_12991#2 ---------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||