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Oryza sativa
cluster # 12997 cluster # 12997       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12997#0 length = 866 sequences # 11  
consensus_12997#1 length = 601 sequences # 1  

consensusID : consensus_12997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 866
fasta sequence
                              [ACAAACCATT-GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT-CAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCATCGCCACCTGCGGGATCAAGTGCTTCCCCAAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGTGCTTCGCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATCGTTAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BP432978             [ACAAACCATTAGCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT CAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU162595             [      CATT GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCTNCAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCTAGGAGCTCGCCCNCNTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCATCGCCACCTGCGGGATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSR28361A            [        TT GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCNTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCNGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGNGNCGCTGCTGCGCTT CAAGGACCGNATCGAGCTGCAGGAGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF324921             [        TT GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT CAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA754826             [                TGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT CAAGGACCGCATCGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSR18231A            [                                                               TTAATCATCAATGGCTTCCGCCGTGGTGAAGANGGCCGTCGTCTGCCNGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCNGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCG CT CAAGNACCGCATCGAGCTGCAGNTGTAGGAGGCNCTGNTCCTCGCCGAGGAGCTCGNCCTCCTCGACGACGNCGCCGGCGACGCCGTCGGAGCCNGCTGCTCCTTCAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU070746             [                                                                                                                                                                                                                                                 CGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCATCGCCACCTGCGGGATCAAGTGCTTCCCCAAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGTGCTTCGCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATC ATTT                                                                                                                                                                                                   ]
[+] EMBL AU071133             [                                                                                                                                                                                                                                                                                                                                                                       AAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGTGCTTCGCCTTCGG GCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATCGTTAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU089718             [                                                                                                                                                                                                                                                                                                                                                                                                                      CACCAGCAAGTGCTT   CTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATC ATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATCGTTAATTAAA  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAA      ]
[+] EMBL OSR26291A            [                                                                                                                                                                                                                                                                                                                                                                                                                              AGTGCTTCGCCTTCGG GCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTT                                                                                                                                                    ]
[+] EMBL AU070918             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATNGTTNATTATATTAAAAAAAAAAAAAAAAA                                                   ]


>consensus_12997#0 ACAAACCATTGCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGT AATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTG TCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCG GCGGCGCTGCTGCGCCTCAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTC GCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCC TGCAGCACCACCAAGTGCAAGACGTGCATCGCCACCTGCGGGATCAAGTGCTTCCCCAAG GGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGTGCTTC GCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCG ATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAAC GAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGA TCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGT CTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGA TCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAA TCGATCGTTAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence
                              [TACACTGCAGCACACACACCCCGCACCCACCGAGGTAAGTAATTAATCCTCCATGCGTTCCCTCGTGGAGAACATGATCGACGACTGCCTGTTCCTCATGGCCACAGCACATCTAATGTCCTCCGCCGACGCCGCGCGTGCGGACATCATCAACAACACGAACAACGATGATGAGACTCAAGGACCGCTGCAAGTTTGCTAGAAGAAGAGGACCTGCCCCTCGCCTATGCACATCAATCTCATCGACGATCCCGGAGCTCACTGCATCGAACCCTGGTGCTCCTGATCATCCAGCAAGTGTCCAGACGAGAATCGCCACCTGCAGGATCACAGTGCTTCCCTACTTCTAATACAGGGTTCCCCACATGGTTCTTCGCCAGCGACTTCACCTACACGAGTGCTTCAGCTTCAGCGCCTAATCGAACAATCAATCACATCATCATTTCTCGTCGTCATCTATCAACTATCAATCTCACGTTGTCACCTACTAATGATATGATCGTATGAGAGAGTGCCTGCATATCGAATTAACTCCCCGACATTCATGTATGCATACATGCATGGATGGTGCATGTGTCCCTGATCATGCGTATATAGGGAG]

[+] EMBL CA753753             [TACACTGCAGCACACACACCCCGCACCCACCGAGGTAAGTAATTAATCCTCCATGCGTTCCCTCGTGGAGAACATGATCGACGACTGCCTGTTCCTCATGGCCACAGCACATCTAATGTCCTCCGCCGACGCCGCGCGTGCGGACATCATCAACAACACGAACAACGATGATGAGACTCAAGGACCGCTGCAAGTTTGCTAGAAGAAGAGGACCTGCCCCTCGCCTATGCACATCAATCTCATCGACGATCCCGGAGCTCACTGCATCGAACCCTGGTGCTCCTGATCATCCAGCAAGTGTCCAGACGAGAATCGCCACCTGCAGGATCACAGTGCTTCCCTACTTCTAATACAGGGTTCCCCACATGGTTCTTCGCCAGCGACTTCACCTACACGAGTGCTTCAGCTTCAGCGCCTAATCGAACAATCAATCACATCATCATTTCTCGTCGTCATCTATCAACTATCAATCTCACGTTGTCACCTACTAATGATATGATCGTATGAGAGAGTGCCTGCATATCGAATTAACTCCCCGACATTCATGTATGCATACATGCATGGATGGTGCATGTGTCCCTGATCATGCGTATATAGGGAG]


>consensus_12997#1 TACACTGCAGCACACACACCCCGCACCCACCGAGGTAAGTAATTAATCCTCCATGCGTTC CCTCGTGGAGAACATGATCGACGACTGCCTGTTCCTCATGGCCACAGCACATCTAATGTC CTCCGCCGACGCCGCGCGTGCGGACATCATCAACAACACGAACAACGATGATGAGACTCA AGGACCGCTGCAAGTTTGCTAGAAGAAGAGGACCTGCCCCTCGCCTATGCACATCAATCT CATCGACGATCCCGGAGCTCACTGCATCGAACCCTGGTGCTCCTGATCATCCAGCAAGTG TCCAGACGAGAATCGCCACCTGCAGGATCACAGTGCTTCCCTACTTCTAATACAGGGTTC CCCACATGGTTCTTCGCCAGCGACTTCACCTACACGAGTGCTTCAGCTTCAGCGCCTAAT CGAACAATCAATCACATCATCATTTCTCGTCGTCATCTATCAACTATCAATCTCACGTTG TCACCTACTAATGATATGATCGTATGAGAGAGTGCCTGCATATCGAATTAACTCCCCGAC ATTCATGTATGCATACATGCATGGATGGTGCATGTGTCCCTGATCATGCGTATATAGGGA G



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12997#0      ACAAACCATTGCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGT 60
consensus_12997#1      --------------------TACACTGCAGCACACACACCCCGCACCCACCGAGGTAAGT 40
                                           ******************************* ** *****

consensus_12997#0      AATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTG 120
consensus_12997#1      AATTAATCCTCCATGCGTTCCCTCGTGGAGAACATGATCGACGACTGCCTGTTCCTCATG 100
                       ******** ** ***  ****  ***** *** ***  ** ** ******* ***** **

consensus_12997#0      TCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCG 180
consensus_12997#1      GCCACAGCACATCTAATGTCCTCCGCCGACGCCGCGCGTGCGGACATCATCAACAACACG 160
                        ** * *  ***** *** ********* *********  ****** * ** ** ** **

consensus_12997#0      G-CGGCGCTGCTGCGCCTCAAGGACCGCATCGAGCT-GCAGGAGGAGGAGGCCCTGGCCC 238
consensus_12997#1      AACAACGATGATGAGACTCAAGGACCGCTGCAAGTTTGCTAGAAGAAGAGGACCTGCCCC 220
                         *  ** ** ** * ************  * ** * **  ** ** **** **** ***

consensus_12997#0      TCGCCGAGGAGC-TCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGC 297
consensus_12997#1      TCGCCTATGCACATCAATCTCATCGACGATCCCGGAGCTCACTGCATCGAACCCTGGTGC 280
                       ***** * *  * **   *** *******   **  *   **  * *** * ** * ***

consensus_12997#0      TCCTGCAGCACCACCAAGTG-CAAGACGTGCATCGCCACCTGCGGGATCA-AGTGCTTCC 355
consensus_12997#1      TCCTGATCATCCAGCAAGTGTCCAGACGAGAATCGCCACCTGCAGGATCACAGTGCTTCC 340
                       *****     *** ****** * ***** * ************ ****** *********

consensus_12997#0      CCAAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGT 415
consensus_12997#1      CTACTTCTAATACAGGGTTCCCCACATGGTTCTTCGCCAGCGACTTCACCTACA-CGAGT 399
                       * *     *  * *** ******** ** ********* *** *******  ** * ***

consensus_12997#0      GCTTCGCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAA 475
consensus_12997#1      GCTTCAGCTTCAGCGCCTAATCGAACAATCAATCACATCATCATTTCTCGTCGTCATCTA 459
                       *****  **** ************ ***** ***** ** ** * **   ******** *

consensus_12997#0      TCG-CGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAG 534
consensus_12997#1      TCAACTATCAATCTCACGTTGTCACCTACTAATGATATGATCGTATGAGAGAGTGCCT-G 518
                       **  * *** ***   **** ******* **** **** *** **** * * ****   *

consensus_12997#0      AATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGT 594
consensus_12997#1      CATATCGAATTAAC-TCCCCGACATTCATGTATGCATACATGCATGGATGGTGCATGTGT 577
                        *** ********* ***** *  ********************* * * **********

consensus_12997#0      CCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGT 654
consensus_12997#1      CCCTGATCATGCGTATATAGGGAG------------------------------------ 601
                       *********** ** * * ***                                      

consensus_12997#0      TATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGT 714
consensus_12997#1      ------------------------------------------------------------
                                                                                   

consensus_12997#0      ACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCC 774
consensus_12997#1      ------------------------------------------------------------
                                                                                   

consensus_12997#0      AATAAATCGATCGTTAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 834
consensus_12997#1      ------------------------------------------------------------
                                                                                   

consensus_12997#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 866
consensus_12997#1      --------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)