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Oryza sativa
cluster # 13008 cluster # 13008       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13008#0 length = 1710 sequences # 11  
consensus_13008#1 length = 545 sequences # 1  

consensusID : consensus_13008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1710
fasta sequence
                              [CCATCCATCCGGCGAGC--GAGCGAGCGAGGAGGGTCGCCGTCGCTCGCCCTGCTGCTTCCGCCGCATCCGTTCCCTACTTATATTATTTTGAAGAGATGGGTAGATCTCCAAGGGGCCGGAACCTCCCAGCTCGTCGACGTGGATCATCTTCATCTTCTAGTGATTTACCTTCCTGCTGCTGGAAGATGAAAGGAACATGCGAGCAAAATGATATAGCATTGGTCTCTGAGAAAAAAGAATGGAAAGGAGCTTCTTGCCCAGTTTGCCTGGAGCATCCACATGATGCTGTCCTCCTCCTCTGTACTTCTCACCACAAGGGTTGCCGGCCATATATGTGTGGTACCAACCACCAGCATTCTAACTGCCTCGAACACTTCAAAGAAGCTTACGCAAAGGAGAAGTTGGCCCACAGTGTATTAATTGAGTCTTCACCTGGCCTTTCATTATCTTTGAATTCTCAGCCAGCCAGCAAGCAACAATGTGCAATGGAACTTGCATGCCCTCTTTGTCGT-GGGGATGT-CAAAGGATGGACTGTGGTCGAACCAGCTCGCCAGTATCTCAATCGCAAGAAAAGAGCCTGTATGCATGATGGCTGCTCATTCATTGGTTCATACAAAGAACTTTGCAAGCATGTGAATTCCAAGCATCCTTCAGCAAAACCTCGTGAAGTTGATCCTGCACATGCAGATGAGTGGAAAAAGTTTGAATGTGAAAGAGAGCGGCAGGATGCCATTAGCACTATCAGAAGCATGACCCCAGGGGCTGTCATTATGGGAGATTATGTGGTTGAGTTTAATGGTGGCAGCAACAACAATTTACTTTCTGATGGAGATGACTTGGAGGAGAGGCTCAACTTCTTCACATCCTTAGATCGCACTCTGAATGAGAGGCTTGACTTCTATGAGTCATCAGATAGTAGTTTGGATGACAGCATTGACTTCTTGGCATCCTTATTTGGCCATGGCAGGAGAATTGCCAGTGGTGATTCATACACCAGAGCTTACAGAAGGTACAGGGAGAGGCCTAGGCGTAATGTCACAGCTAGCTCGGTCGCTGCCTCTGATATCCAGCATGATTCAGCTAACACTCGAAGGGGACGTGTCAGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGTACCATCC-TGTGGTGACT-CATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCACGGGTTCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGATGCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTG-AGACAGG-CAGCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAGGGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTTGTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCATCCATGAGCAAATCTTTTGTTTGTTGTTACCATGCTGCAACCTGTTACTGTTGATTTGACAGGAACGCTACAGCAGTCATATCAGTTTGT]

[+] EMBL AK071355             [CCATCCATCCGGCGAGC  GAGCGAGCGAGGAGGGTCGCCGTCGCTCGCCCTGCTGCTTCCGCCGCATCCGTTCCCTACTTATATTATTTTGAAGAGATGGGTAGATCTCCAAGGGGCCGGAACCTCCCAGCTCGTCGACGTGGATCATCTTCATCTTCTAGTGATTTACCTTCCTGCTGCTGGAAGATGAAAGGAACATGCGAGCAAAATGATATAGCATTGGTCTCTGAGAAAAAAGAATGGAAAGGAGCTTCTTGCCCAGTTTGCCTGGAGCATCCACATGATGCTGTCCTCCTCCTCTGTACTTCTCACCACAAGGGTTGCCGGCCATATATGTGTGGTACCAACCACCAGCATTCTAACTGCCTCGAACACTTCAAAGAAGCTTACGCAAAGGAGAAGTTGGCCCACAGTGTATTAATTGAGTCTTCACCTGGCCTTTCATTATCTTTGAATTCTCAGCCAGCCAGCAAGCAACAATGTGCAATGGAACTTGCATGCCCTCTTTGTCGT GGGGATGT CAAAGGATGGACTGTGGTCGAACCAGCTCGCCAGTATCTCAATCGCAAGAAAAGAGCCTGTATGCATGATGGCTGCTCATTCATTGGTTCATACAAAGAACTTTGCAAGCATGTGAATTCCAAGCATCCTTCAGCAAAACCTCGTGAAGTTGATCCTGCACATGCAGATGAGTGGAAAAAGTTTGAATGTGAAAGAGAGCGGCAGGATGCCATTAGCACTATCAGAAGCATGACCCCAGGGGCTGTCATTATGGGAGATTATGTGGTTGAGTTTAATGGTGGCAGCAACAACAATTTACTTTCTGATGGAGATGACTTGGAGGAGAGGCTCAACTTCTTCACATCCTTAGATCGCACTCTGAATGAGAGGCTTGACTTCTATGAGTCATCAGATAGTAGTTTGGATGACAGCATTGACTTCTTGGCATCCTTATTTGGCCATGGCAGGAGAATTGCCAGTGGTGATTCATACACCAGAGCTTACAGAAGGTACAGGGAGAGGCCTAGGCGTAATGTCACAGCTAGCTCGGTCGCTGCCTCTGATATCCAGCATGATTCAGCTAACACTCGAAGGGGACGTGTCAGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGTACCATCC TGTGGTGACT CATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCACGGGTTCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGATGCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTG AGACAGG CAGCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAGGGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTTGTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCATCCATGAGCATATCTTTTGTTTGTTGTTACCATGCTGCAACCTGTTACTGTTGATTTGACAGGAACGCTACAGCAGTCATATCAGTTTGT]
[+] EMBL AK120966             [CCATCCATCCGGCGAGCGAGAGCGAGCGAGGAGGGTCGCCGTCGCTCGCCCTGCTGCTTCCGCCGCATCCGTTCCCTACTTATATTATTTTGAAGAGATGGGTAGATCTCCAAGGGGCCGGAACCTCCCAGCTCGTCGACGTGGATCATCTTCATCTTCTAGTGATTTACCTTCCTGCTGCTGGAAGATGAAAGGAACATGCGAGCAAAATGATATAGCATTGGTCTCTGAGAAAAAAGAATGGAAAGGAGCTTCTTGCCCAGTTTGCCTGGAGCATCCACATGATGCTGTCCTCCTCCTCTGTACTTCTCACCACAAGGGTTGCCGGCCATATATGTGTGGTACCAACCACCAGCATTCTAACTGCCTCGAACACTTCAAAGAAGCTTACGCAAAGGAGAAGTTGGCCCACAGTGTATTAATTGAGTCTTCACCTGGCCTTTCATTATCTTTGAATTCTCAGCCAGCCAGCAAGCAACAATGTGCAATGGAACTTGCATGCCCTCTTTGTCGT GGGGATGT CAAAGGATGGACTGTGGTCGAACCAGCTCGCCAGTATCTCAATCGCAAGAAAAGAGCCTGTATGCATGATGGCTGCTCATTCATTGGTTCATACAAAGAACTTTGCAAGCATGTGAATTCCAAGCATCCTTCAGCAAAACCTCGTGAAGTTGATCCTGCACATGCAGATGAGTGGAAAAAGTTTGAATGTGAAAGAGAGCGGCAGGATGCCATTAGCACTATCAGAAGCATGACCCCAGGGGCTGTCATTATGGGAGATTATGTGGTTGAGTTTAATGGTGGCAGCAACAACAATTTACTTTCTGATGGAGATGACTTGGAGGAGAGGCTCAACTTCTTCACATCCTTAGATCGCACTCTGAATGAGAGGCTTGACTTCTATGAGTCATCAGATAGTAGTTTGGATGACAGCATTGACTTCTTGGCATCCTTATTTGGCCATGGCAGGAGAATTGCCAGTGGTGATTCATACACCAGAGCTTACAGAAGGTACAGGGAGAGGCCTAGGCGTAATGTCACAGCTAGCTCGGTCGCTGCCTCTGATATCCAGCATGATTCAGCTAACACTCGAAGGGGACGTGTCAGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGTACCATCC TGTGGTGACT CATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCACGGGTTCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGATGCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTG AGACAGG CAGCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAGGGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTTGTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATT                                                                                                 ]
[+] EMBL CF331865             [      ATCCGGCGAGC  GAGCGAGCGAGGAGGGTCGCCGTCGCTCGCCCTGCTGCTTCCGCCGCATCCGTTCCCTACTTATATTATTTTGAAGAGATGGGTAGATCTCCAAGGGGCCGGAACCTCCCAGCTCGTCGACGTGGATCATCTTCATCTTCTAGTGATTTACCTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU058380             [                                                                                                                                                                                                                        AGCATTGGTCTCTGAGAAAAAAGAATGGAAAGGAGCTTCTTGCCCAGTTTGCCTGGAGCATCCACATGATGCTGTCCTCCTCCTCTGTACTTCTCACCACAAGGGTTGCCGGCCATATATGTGTGGTACCAACCACCAGCATTCTAACTGCCTCGAACACTTCAAAGAAGCTTACGCAAAGGAGAAGTTGGCCCACAGTGTATTAATTGAGTCTTCACCTGGCCTTTCATTATCTTTGAATTCTCAGCCAGCCAGCAAGCAACAATGTGCAATGGNACTTGCATGCCCTCTTTGTCGTGGGGGATGTCCAAAGGATGGACTGTGGTCGAACCAGCTCGCCAGTATCTCAATCGCAAGAAAAGAGCCTGTATGCATGATGGCTGCTCAATCA TGGGTCATACNAAG ACTTTGC AGCATGTGAATTCCAgcncc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU166205             [                                                                                                                                                                                                                        AGCATTGGTCTCTGAGAAAAAAGAATGGAAAGGAGCTTCTTGCCCAGTTTGCCTGGAGCATCCACATGATGCTGTCCTCCTCCTCTGTACTTCTCACCACAAGGGTTGCCGGCCATATATGTGTGGTACCAACCACCAGCATTCTAACTGCCTCGAACACTTCAAAGAAGCTTACGCAAAGGAGAAGTTGGCCCACAGTGTATTAATTGAGTCTTCACCTGGCCTTTCATTATCTTTGAATTCTCAGCCAGCCAGCAAGCAACAATGTGCAATGGGACTTGCATGCCCTCTTTGTCGT GGGGATGT CAAA GATGGACTGTGG CG ACCAG TCG CAG ATCTC ATCGC AGAAAgngctg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C96973               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TATGAGTCATCAGATAGTAGTTTGGATGACAGCATTGACTTCTTGGCATCCTTATTTGGCCATGGCAGGAGAATTGCCAGTGGTGATTCATACACCAGAGCTTACAGAAGGTACAGGGAGAGGCCTAGGCGTAATGTCACAGCTAGCTCGGTCGCTGCCTCTGATATCCAGCATGATTCAGCTAACACTCGAAGGGGACGTGTCAGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGTACCATCC TGTGGTGACT CATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCACGGGTTCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGATGCCTGGTTTTCAGAGGATCATCATGTT                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU058382             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TACAGGGAGAGGCCTAGGCGTAATGTCACAGCTAGCTCGGTCGCTGCCTCTGATATCCAGCATGATTCAGCTAACACTCGAAGGGGACNTGTCAGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGTACCATCC TGTGGTGACT CATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCACGGGTTCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGATGCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTG AGACAGG CAGCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAGGGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTTGTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCATCaaaaa                                                                                   ]
[+] EMBL C96974               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tTACAGGAAGAGCCTTAGNCGTAATGTCACAGCTAGCTCGGTCGCTGCCTCTGATATCCAGCATGATTCAGCTAACACTCGAAGGGGACGTGTCAGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGTACCATCC TGTGGTGACT CATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCACGGGTTCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGATGCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTG AGACAGG CAGCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAGGGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTTGTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCAaaaaa                                                                                     ]
[-] EMBL BE228978             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       anAGGGAGAGCCCTAGG GTAATGTCACAGNTAGTTCGTTCGCTGCTTNTGATATCCAGCNNGATTCAGNTAACATTCGAA GGGANGTGTCGGTGGTATTCGGGCCATAGGGAGGANTTNGCGGCGGCACCATCCNNGTGG GANTCCATGTAAGGTCAACACATGGCATTTAAGAAAGGGAGCTACCACGGGTTCTGTTCATTCTATCCATCCGCANGGGAGGCAAAANAACATACCGCGGCATTTGATGCCTGGTTTTCAGAGGATCATCATGTTCTTCCGGNACCTTTTTCTTTGTTG AGACAGG CAGCAACCGAGGATACAGGTTGGANGGAGATNTCTGTTAGGGCACTGCTCATGCCTATATAGGGCAAAAACAGTGNTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTTGTATCCATGTTNTAGTGGATCGCACGTTTGATCCTAGNGACTTATTAGCTATTATTATCATCCATGAGCAA                                                                               ]
[-] EMBL CF331866             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGGTGACT CATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCCACCACGGGTTCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGATGCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTG AGACAGG CAGCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGC CATGCCTATATAGGGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTTGTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCATCCATGAGCAAAaaa                                                                           ]
[+] EMBL AU095032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGAAGACAGGCCAGCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAGGGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTTGTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCATCaaaaa                                                                                   ]


>consensus_13008#0 CCATCCATCCGGCGAGCGAGCGAGCGAGGAGGGTCGCCGTCGCTCGCCCTGCTGCTTCCG CCGCATCCGTTCCCTACTTATATTATTTTGAAGAGATGGGTAGATCTCCAAGGGGCCGGA ACCTCCCAGCTCGTCGACGTGGATCATCTTCATCTTCTAGTGATTTACCTTCCTGCTGCT GGAAGATGAAAGGAACATGCGAGCAAAATGATATAGCATTGGTCTCTGAGAAAAAAGAAT GGAAAGGAGCTTCTTGCCCAGTTTGCCTGGAGCATCCACATGATGCTGTCCTCCTCCTCT GTACTTCTCACCACAAGGGTTGCCGGCCATATATGTGTGGTACCAACCACCAGCATTCTA ACTGCCTCGAACACTTCAAAGAAGCTTACGCAAAGGAGAAGTTGGCCCACAGTGTATTAA TTGAGTCTTCACCTGGCCTTTCATTATCTTTGAATTCTCAGCCAGCCAGCAAGCAACAAT GTGCAATGGAACTTGCATGCCCTCTTTGTCGTGGGGATGTCAAAGGATGGACTGTGGTCG AACCAGCTCGCCAGTATCTCAATCGCAAGAAAAGAGCCTGTATGCATGATGGCTGCTCAT TCATTGGTTCATACAAAGAACTTTGCAAGCATGTGAATTCCAAGCATCCTTCAGCAAAAC CTCGTGAAGTTGATCCTGCACATGCAGATGAGTGGAAAAAGTTTGAATGTGAAAGAGAGC GGCAGGATGCCATTAGCACTATCAGAAGCATGACCCCAGGGGCTGTCATTATGGGAGATT ATGTGGTTGAGTTTAATGGTGGCAGCAACAACAATTTACTTTCTGATGGAGATGACTTGG AGGAGAGGCTCAACTTCTTCACATCCTTAGATCGCACTCTGAATGAGAGGCTTGACTTCT ATGAGTCATCAGATAGTAGTTTGGATGACAGCATTGACTTCTTGGCATCCTTATTTGGCC ATGGCAGGAGAATTGCCAGTGGTGATTCATACACCAGAGCTTACAGAAGGTACAGGGAGA GGCCTAGGCGTAATGTCACAGCTAGCTCGGTCGCTGCCTCTGATATCCAGCATGATTCAG CTAACACTCGAAGGGGACGTGTCAGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGT ACCATCCTGTGGTGACTCATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCAC GGGTTCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGAT GCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTGAGACAGGCA GCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAG GGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTT TCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTC CAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTT GTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCA TCCATGAGCAAATCTTTTGTTTGTTGTTACCATGCTGCAACCTGTTACTGTTGATTTGAC AGGAACGCTACAGCAGTCATATCAGTTTGT



consensusID : consensus_13008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence
                              [GACGAGACAAGGGGGAAGGGGACGTGTCGGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGCACCATCCTGTGGTGACTCATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCACGGGTCCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGATGCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTGAGACAGGCAGCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAGGGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTTGTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCA]

[+] EMBL CA766698             [GACGAGACAAGGGGGAAGGGGACGTGTCGGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGCACCATCCTGTGGTGACTCATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCACGGGTCCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGATGCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTGAGACAGGCAGCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAGGGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTTGTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCA]


>consensus_13008#1 GACGAGACAAGGGGGAAGGGGACGTGTCGGTGGTATTCGGGCCATAGGGAGGACTTCGCG GCGGCACCATCCTGTGGTGACTCATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCT ACCACGGGTCCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCAT TTGATGCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTGAGAC AGGCAGCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTA TATAGGGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGC CCTTTTCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGC TGTTCCAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCC GTTTTGTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTAT TATCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13008#0      CCATCCATCCGGCGAGCGAGCGAGCGAGGAGGGTCGCCGTCGCTCGCCCTGCTGCTTCCG 60
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      CCGCATCCGTTCCCTACTTATATTATTTTGAAGAGATGGGTAGATCTCCAAGGGGCCGGA 120
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      ACCTCCCAGCTCGTCGACGTGGATCATCTTCATCTTCTAGTGATTTACCTTCCTGCTGCT 180
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      GGAAGATGAAAGGAACATGCGAGCAAAATGATATAGCATTGGTCTCTGAGAAAAAAGAAT 240
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      GGAAAGGAGCTTCTTGCCCAGTTTGCCTGGAGCATCCACATGATGCTGTCCTCCTCCTCT 300
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      GTACTTCTCACCACAAGGGTTGCCGGCCATATATGTGTGGTACCAACCACCAGCATTCTA 360
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      ACTGCCTCGAACACTTCAAAGAAGCTTACGCAAAGGAGAAGTTGGCCCACAGTGTATTAA 420
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      TTGAGTCTTCACCTGGCCTTTCATTATCTTTGAATTCTCAGCCAGCCAGCAAGCAACAAT 480
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      GTGCAATGGAACTTGCATGCCCTCTTTGTCGTGGGGATGTCAAAGGATGGACTGTGGTCG 540
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      AACCAGCTCGCCAGTATCTCAATCGCAAGAAAAGAGCCTGTATGCATGATGGCTGCTCAT 600
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      TCATTGGTTCATACAAAGAACTTTGCAAGCATGTGAATTCCAAGCATCCTTCAGCAAAAC 660
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      CTCGTGAAGTTGATCCTGCACATGCAGATGAGTGGAAAAAGTTTGAATGTGAAAGAGAGC 720
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      GGCAGGATGCCATTAGCACTATCAGAAGCATGACCCCAGGGGCTGTCATTATGGGAGATT 780
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      ATGTGGTTGAGTTTAATGGTGGCAGCAACAACAATTTACTTTCTGATGGAGATGACTTGG 840
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      AGGAGAGGCTCAACTTCTTCACATCCTTAGATCGCACTCTGAATGAGAGGCTTGACTTCT 900
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      ATGAGTCATCAGATAGTAGTTTGGATGACAGCATTGACTTCTTGGCATCCTTATTTGGCC 960
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      ATGGCAGGAGAATTGCCAGTGGTGATTCATACACCAGAGCTTACAGAAGGTACAGGGAGA 1020
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      GGCCTAGGCGTAATGTCACAGCTAGCTCGGTCGCTGCCTCTGATATCCAGCATGATTCAG 1080
consensus_13008#1      -----------------------------------------------------GACGAGA 7
                                                                            **     

consensus_13008#0      CTAACACTCGAAGGGGACGTGTCAGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGT 1140
consensus_13008#1      CAAGGGG--GAAGGGGACGTGTCGGTGGTATTCGGGCCATAGGGAGGACTTCGCGGCGGC 65
                       * *      ************** *********************************** 

consensus_13008#0      ACCATCCTGTGGTGACTCATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCAC 1200
consensus_13008#1      ACCATCCTGTGGTGACTCATGTAAGGTCAACACATGGCATCTAAGAAAGGGAGCTACCAC 125
                       ************************************************************

consensus_13008#0      GGGTTCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGAT 1260
consensus_13008#1      GGGTCCTGTTCATTCTATCCATCCGCAAGGGAGGCAAAATAACATACCGCGGCATTTGAT 185
                       **** *******************************************************

consensus_13008#0      GCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTGAGACAGGCA 1320
consensus_13008#1      GCCTGGTTTTCAGAGGATCATCATGTTCTTCCAGTACCTTTTTCTTTGCTGAGACAGGCA 245
                       ************************************************************

consensus_13008#0      GCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAG 1380
consensus_13008#1      GCAACCGAGGATACAGGTTGGACGGAGATCTCTGTTAGGGCACTGCTCATGCCTATATAG 305
                       ************************************************************

consensus_13008#0      GGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTT 1440
consensus_13008#1      GGCAAAAACAGTGCTGCTTTTTTCCGGTGCTGCCTTGCATGGATTTTGTGAATGCCCTTT 365
                       ************************************************************

consensus_13008#0      TCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTC 1500
consensus_13008#1      TCTTTTCCTTCCATTGGATCGACGCAAATGGGTTTTTTTGTTTGGCAGCGATTGCTGTTC 425
                       ************************************************************

consensus_13008#0      CAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTT 1560
consensus_13008#1      CAAAACATGAACATCATGAAAACTTATTGGGCATATTTGCTTGTCATGTGCTGCCGTTTT 485
                       ************************************************************

consensus_13008#0      GTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCA 1620
consensus_13008#1      GTATCCATGTTCTAGTGGATCGCACGTTTGATCCTAGCGACTTATTAGCTATTATTATCA 545
                       ************************************************************

consensus_13008#0      TCCATGAGCAAATCTTTTGTTTGTTGTTACCATGCTGCAACCTGTTACTGTTGATTTGAC 1680
consensus_13008#1      ------------------------------------------------------------
                                                                                   

consensus_13008#0      AGGAACGCTACAGCAGTCATATCAGTTTGT 1710
consensus_13008#1      ------------------------------
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)