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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1761 fasta sequence
[ATTGATGACCTCCGCCGCCACCGCCGTAGATGCACAGGCTCTCCTTCCTCCAGGCCACCATCATTGACGCGCCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATGAGGAGGAGGAGGAGAAGCGGGGGGGCAGGGCGGGGGAGAGGAGGCTCAGAGGCGGCGGGAGCGCCGCGGCGGCGGCGGCGGCGGCGGGGAGCGGGGAGCTCCTCTCCATCCCCGGCGTGGGGCCTCGCAACCAGAGGAAGCTCGTGGACAACGGATTCGAGGGCGTCGCGCAGCTTAAGCAGCTCTATCGGGATAAGTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATCATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAGCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCTTTTGCGTGGAAGGGAATATTAGTGTTGGGAAGTCTACCTTTCTCCAAAGAATAGCTAATGAGACCATCGAACTGCGTGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCTGACCACTTCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTTCAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAACCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCTGTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCAGATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTTGACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCCTCCAGCAATTCGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCA-CTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTA-GGATCTTACAAATCCCAC-TCTCAC-TGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGTTAGCCACTGATGTAAGATAGTC-TGCCACCGCATC-TCCATCTTTTGT-AAATGAT-CATCTTCCACCCTTTCCGAGTTCCAT-GTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGATTGGTCATG]
[+] EMBL AK071740 [ATTGATGACCTCCGCCGCCACCGCCGTAGATGCACAGGCTCTCCTTCCTCCAGGCCACCATCATTGACGCGCCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATGAGGAGGAGGAGGAGAAGCGGGGGGGCAGGGCGGGGGAGAGGAGGCTCAGAGGCGGCGGGAGCGCCGCGGCGGCGGCGGCGGCGGCGGGGAGCGGGGAGCTCCTCTCCATCCCCGGCGTGGGGCCTCGCAACCAGAGGAAGCTCGTGGACAACGGATTCGAGGGCGTCGCGCAGCTTAAGCAGCTCTATCGGGATAAGTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATCATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAGCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCTTTTGCGTGGAAGGGAATATTAGTGTTGGGAAGTCTACCTTTCTCCAAAGAATAGCTAATGAGACCATCGAACTGCGTGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCTGACCACTTCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTTCAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAACCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCTGTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCAGATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTTGACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCCTCCAGCAATTCGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCA CTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTA GGATCTTACAAATCCCAC TCTCAC TGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAG GTTAGCCACTGATGTAAGATAGTC TGCCACCGCATC TCCATCTTTTGT AAATGAT CATCTTCCACCCTTTCCGAGTTCCAT GTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCG ]
[+] EMBL CB650332 [ AGCTTAAGCAGCTCTATCGGGATAAGTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATCATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAGCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCTTTTGCGTGGAAGGGAATATTAGTGTTGGGAAGTCTACCTTTCTCCAAAGAATAGCTAATGAGACCATCGAACTGCGTGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCTGACCACTTCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTTCAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAACCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCTGTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCAGATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTTGACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGNTCCTTGCCTCCAGCAATTCGAGATCGTGT ]
[+] EMBL CB000129 [ TAACTTCTTTCATTAAGGAGAGTGTTGATGAGGCGTTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCTTTTGCGTGGAAGGGAATATTAGTGTTGGGAAGTCTACCTTTCTCCAAAGAATAGCTAATGAGACCATCGAACTGCGTGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCTGACCACTTCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTTCAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAACCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCTGTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCAGATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTTGACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCCTCCAGCAATTCGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCACCTCAAGCATCCCGAAGGTCCCTGCTCTGGTCTTGGATTGTG ]
[+] EMBL AK059420 [ TGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCTGACCACTCCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTTCAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAACCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCTGTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCAGATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTTGACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCTTCCAGCAATTCGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCA CTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTA GGATCTTACAAATCCCAC TCTCAC TGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGTTAGCCACTGATGTAAGATAGTC TGCCACCGCATC TCCATCTTTTGT AAATGAT CATCTTCCACCCTTTCCGAGTTCCAT GTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGATTGGTCATG]
[-] EMBL CB650333 [ TTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCCTCCAGCAATTGGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCA CTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTA GGATCTTACAAATCCCAC TCTCAC TGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGTTAGCCACTGATGTAAGATAGTC TGCCACCGCATC TCCATCTTTTGT AAATGAT CATCTTCCACCCTTTCCGAGTTCCAT GTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTAGGTTAGATGATCCGGAACTCTTTGACATTTCTGGG ]
[+] EMBL CB238439 [ GTCTTTTACTTGGAAGGAGATCACATGCA CTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAA TTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCT ]
[+] EMBL C73813 [ TCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTAGGGATCTTACAAATCCCACTTCTCACTTGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGTTAGCCACTGATGTAAGATAGTCTTGCCACCGCATCTTCCATCTTTTGTAAAATGATCCATCTTCCACCCTTTCCGGGTTCCATGGTTTTGTAGTAGCGTCAGTTTCCGTTTGCTTGNGTCCTGG ATCTGGAT ]
consensusID : consensus_13017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[TTTTTTTTTTTTTGAAAATTCACCAGGGGGGAGAGTTTCCCCACCTGAATATATTAAAGAAGAAATAAGGGGGAAGGAGTGCAGTGTTCAGTTACACAATTAAGGAGCGAATACAAGTTGAGAAAAGGGATTTCCAAGAGGAGATTACATGTCGATCATCTATTTTAATTCTTTCAGCCCACAGGGAAGCATCATCAATGCACTTCGTGAGCAACCAACGGAGCGAAATTTCTTCTCTTCTAAAGACCACATCATGTCGATAAATCCATAAATTCCAGAAACATAGAAGATAGAAAACCCGAAAGTGTTTAGTTGGGATAGATGATGGGGGGGTGAGAGTTANNACCCTGCNATAGGTGGGGAGCTGAGGGGGATCCCACGGTTTGTCTATAATGGCGTGGGACACCGCGGGTGACGGGATAGGGGTGAGGGAGTGCCCCCCCACGCAGCGGGGTTCACCTGGGAGAGGGCGGAGAGGCGCGATGTGTCCGTTGTGTTTCCGTGAGAACAGACGCAGGTCCCAGCCCGCGGGAGAGTGCGAGAGATTGTACCGACCGGCGCGCGCCTGCGTGTGGGGCAAGCCAGATATTTATCGCGGGCGGTCGCGTAGGGCGGGTTCTCTTGCCGCGCGCGTGCCCCGCGGTCTCTCAGCGCTTGTTGTGACTCGTAGCAGGGAGTTGCTCGAGGGTGTTGGGT]
[+] EMBL CA760142 [TTTTTTTTTTTTTGAAAATTCACCAGGGGGGAGAGTTTCCCCACCTGAATATATTAAAGAAGAAATAAGGGGGAAGGAGTGCAGTGTTCAGTTACACAATTAAGGAGCGAATACAAGTTGAGAAAAGGGATTTCCAAGAGGAGATTACATGTCGATCATCTATTTTAATTCTTTCAGCCCACAGGGAAGCATCATCAATGCACTTCGTGAGCAACCAACGGAGCGAAATTTCTTCTCTTCTAAAGACCACATCATGTCGATAAATCCATAAATTCCAGAAACATAGAAGATAGAAAACCCGAAAGTGTTTAGTTGGGATAGATGATGGGGGGGTGAGAGTTANNACCCTGCNATAGGTGGGGAGCTGAGGGGGATCCCACGGTTTGTCTATAATGGCGTGGGACACCGCGGGTGACGGGATAGGGGTGAGGGAGTGCCCCCCCACGCAGCGGGGTTCACCTGGGAGAGGGCGGAGAGGCGCGATGTGTCCGTTGTGTTTCCGTGAGAACAGACGCAGGTCCCAGCCCGCGGGAGAGTGCGAGAGATTGTACCGACCGGCGCGCGCCTGCGTGTGGGGCAAGCCAGATATTTATCGCGGGCGGTCGCGTAGGGCGGGTTCTCTTGCCGCGCGCGTGCCCCGCGGTCTCTCAGCGCTTGTTGTGACTCGTAGCAGGGAGTTGCTCGAGGGTGTTGGGT]
consensusID : consensus_13017#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 659 fasta sequence
[GAGGACGAGACAAGGGGGGAGATCACATGCACTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGCCAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGA-CA-TAGGATTTCAGCTCCAGAATGAACGTAGGATCTTACAAATCCCACTCTCACTGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGCTAGCCACTGATGTAAGATAGTCTGCCACCGCATCTCCATCTTTTGTAAATGATCATCTTCCACCCTTTCCGAGTTCCATGTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGA]
[+] EMBL CA764867 [GAGGACGAGACAAGGGGGGAGATCACATGCACTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGCCAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGA CA TAGGATTTCAGCTCCAGAATGAACGTAGGATCTTACAAATCCCACTCTCACTGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGCTAGCCACTGATGTAAGATAGTCTGCCACCGCATCTCCATCTTTTGTAAATGATCATCTTCCACCCTTTCCGAGTTCCATGTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGA]
[+] EMBL BQ906967 [ AGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGCCAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACCATTAGGATTTCAGCTCCAGAATGAACGTAGGATCTTACAAATCCCACTCTCACTGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGCTAGCCACTGATGTAAGATAGTCTGCCACCGCATCTCCATCTTTTGTAAATGATCATCTTCCACCCTTTCCGAGTTCCATGTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCGTTTGTTTGTaaaaa ]
consensusID : consensus_13017#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[AAATTTGTCTGGGAAAACAAGGCCCCCCTGAAGATCCAATTCTTTGCATGGCTACTGGTTAGGGATCGCCTCCCTACTAAGAAGAATCTACACAAAAAAACTATTGTGCCGTCTCCAGAGTGTGATCTCTGTTTTCTTACTGAAGAAACGGCCTCACATCTATGCCTTCACTGTTTTGTTTCCCTGCAGTTTTGGGCGAGCCTTGGGATCACTCTTAACATCCTATCTATTGCCAGTGTCTCAACTCTCACCCCCCCATCATCTATCCCAACTAAACACTTTCAGGTTTTCTATCTTCTATGTTTCTGGAATTTATGGATTCATCGACATGATGTGGTCTTTAGAAGAGAAGAAATTTCGCTCCGTCGGTTGCTCACGAAATGCATTGATGATGCTTCCCTGTGGGCTGAAAGAATTAAAATAGATGATCGACATTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATCATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAGCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCT]
[+] EMBL CF306201 [AAATTTGTCTGGGAAAACAAGGCCCCCCTGAAGATCCAATTCTTTGCATGGCTACTGGTTAGGGATCGCCTCCCTACTAAGAAGAATCTACACAAAAAAACTATTGTGCCGTCTCCAGAGTGTGATCTCTGTTTTCTTACTGAAGAAACGGCCTCACATCTATGCCTTCACTGTTTTGTTTCCCTGCAGTTTTGGGCGAGCCTTGGGATCACTCTTAACATCCTATCTATTGCCAGTGTCTCAACTCTCACCCCCCCATCATCTATCCCAACTAAACACTTTCAGGTTTTCTATCTTCTATGTTTCTGGAATTTATGGATTCATCGACATGATGTGGTCTTTAGAAGAGAAGAAATTTCGCTCCGTCGGTTGCTCACGAAATGCATTGATGATGCTTCCCTGTGGGCTGAAAGAATTAAAATAGATGATCGACATTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATCATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAGCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCT]
consensusID : consensus_13017#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence
[AGGGGATAACACCAAAACCCTCCCCCCTCCAAACCCTAGTCCCCCATTGATGACCTCCGCCGCCACCGCCGTAGATGCACAGGCTCTCCTTCCTCCAGGCCACCATCATTGACGCGCCGCTGCTCCTCTCCTCCGCCTCCATGGCCACCGTGCCGGCGCTGCGGCTCGGCTCCCCCGCCGCGCTCCTAGNAGNGNNCCGCCCGCCGCGGTGGCTGCGGTGCGGCGGCGGCGGTGTCGGGGGAGGGGGAGGGGGAGTGGGAGTGGCGCGGAGGGGGATGGCGTGCTCCGTGGAGGCCTTGGCGANGCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATTAAGGAAGAGGAGGAGAAGCGGAGGGGCAAGGCGGGGGAAAAGAAGCTTCANAA]
[+] EMBL AU163577 [AGGGGATAACACCAAAACCCTCCCCCCTCCAAACCCTAGTCCCCCATTGATGACCTCCGCCGCCACCGCCGTAGATGCACAGGCTCTCCTTCCTCCAGGCCACCATCATTGACGCGCCGCTGCTCCTCTCCTCCGCCTCCATGGCCACCGTGCCGGCGCTGCGGCTCGGCTCCCCCGCCGCGCTCCTAGNAGNGNNCCGCCCGCCGCGGTGGCTGCGGTGCGGCGGCGGCGGTGTCGGGGGAGGGGGAGGGGGAGTGGGAGTGGCGCGGAGGGGGATGGCGTGCTCCGTGGAGGCCTTGGCGANGCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATTAAGGAAGAGGAGGAGAAGCGGAGGGGCAAGGCGGGGGAAAAGAAGCTTCANAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13017#0 ATTGATGACCTCCGCCGCCACCGCCGTAGATGCACAGGCTCTCCTTCCTCCAGGCCACCA 60
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 TCATTGACGCGCCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATGAGGAGGAGGAGGAG 120
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 AAGCGGGGGGGCAGGGCGGGGGAGAGGAGGCTCAGAGGCGGCGGGAGCGCCGCGGCGGCG 180
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 GCGGCGGCGGCGGGGAGCGGGGAGCTCCTCTCCATCCCCGGCGTGGGGCCTCGCAACCAG 240
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 AGGAAGCTCGTGGACAACGGATTCGAGGGCGTCGCGCAGCTTAAGCAGCTCTATCGGGAT 300
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 AAGTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATC 360
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 ATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAG 420
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 CTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCTTTTGCGTGGAA 480
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 GGGAATATTAGTGTTGGGAAGTCTACCTTTCTCCAAAGAATAGCTAATGAGACCATCGAA 540
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 CTGCGTGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCT 600
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 GACCACTTCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTT 660
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 CAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAA 720
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 CCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTT 780
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 CATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCT 840
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 GTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCA 900
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 GATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTT 960
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 GACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGA 1020
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 GGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCCTCCA 1080
consensus_13017#2 ------------------------------------------------------------
consensus_13017#3 ------------------------------------------------------------
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 ------------------------------------------------------------
consensus_13017#0 GCAATTCGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCACTCAAGCATCCAGAAG 1140
consensus_13017#2 -------GAGGACGAG------ACAAGGGGGGAGATCACATGCACTCAAGCATCCAGAAG 47
consensus_13017#3 ------------------AAATTTGTCTGGGAAAACAAGGCCCCCCTGAAGATCCAA--- 39
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 -TTTTTTTTTTTTTGAAAATTCACCAGGGGGGAGAGTTTCCCCACCTGAATATATTAAAG 59
consensus_13017#0 GTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGA-AGC 1199
consensus_13017#2 GTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGA-AGC 106
consensus_13017#3 -TTCTTTGCATGGCTACTGGTTAGGGATC--GCCTCCCTACTAAGAAGAATCTACACAAA 96
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 AAGAAATAAGGGGGAAGGAGTGCAGTGTTCAGTTACACAATTAAGGAGCGAATACA-AGT 118
consensus_13017#0 TAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGA 1259
consensus_13017#2 TAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGA 166
consensus_13017#3 AAAACTATTGTGCCGTCTCCAGAGTGTGATCTCTGTTTTCTTACTGAAGAAACGGCCTCA 156
consensus_13017#4 ------------------------------------------------------------
consensus_13017#1 TGAGAAAAGGGATTTCCAAGAGGAGATTACATGTCGATCATCTATTTTAATTCTTTCAGC 178
consensus_13017#0 -AGCTCCATCTGAACAAACAAGCACTGACA-AGAACCGTATCAATC--CACAGATCATGC 1315
consensus_13017#2 -AGCTCCATCTGAACAAACAAGCACTGCCA-AGAACCGTATCAATC--CACAGATCATGC 222
consensus_13017#3 CATCTATGCCTTCACTGTTTTGTTTCCCTGCAGTTTTGGGCGAGCC--TTGGGATCACTC 214
consensus_13017#4 ------------------------------------AGGGGATAAC--ACCAAAACCCTC 22
consensus_13017#1 -----CCACAGGGAAGCATCATCAATGCACTTCGTGAGCAACCAACGGAGCGAAATTTCT 233
* * *
consensus_13017#0 TTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTA 1375
consensus_13017#2 TTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTA 282
consensus_13017#3 TTAACATCCTATCT--ATTGCCAGTGTCTCA----ACTCTCACCCCCCCATCATCTATCC 268
consensus_13017#4 CCCCCTCCAAACCCTAGTCCCCCATTGATGACC--TCCGCCGCCACCGCCGTAGATGCAC 80
consensus_13017#1 TCTCTTCTAAAGACC-ACATCATGTCGATAAATCCATAAATTCCAGAAACATAGAAGATA 292
* * * * * *
consensus_13017#0 TGAATCTGA----ACTTCAGAAGAGCCATGTCTTCC-TATCTCTCGA-CATAGGATTTCA 1429
consensus_13017#2 TGAATCTGA----ACTTCAGAAGAGCCATGTCTTCC-TATCTCTCGA-CATAGGATTTCA 336
consensus_13017#3 CAACTAAAC----ACTTTC-AGGTTTTCTATCTTCTATGTTTCTGGAATTTATGGATTCA 323
consensus_13017#4 AGGCTCTCC----TTCCTCCAGGC-CACCATCATTGACGCGCCGCTGCTCCTCTCCTCCG 135
consensus_13017#1 GAAAACCCGAAAGTGTTTAGTTGGGATAGATGATGGGGGGGTGAGAGTTANNACCCTGCN 352
* * * * *
consensus_13017#0 GCTCCAGAATGAA---CGTAGGATCTTACAAATCCCACTCTCACTGAC-----CTTGTA- 1480
consensus_13017#2 GCTCCAGAATGAA---CGTAGGATCTTACAAATCCCACTCTCACTGAC-----CTTGTA- 387
consensus_13017#3 TCGACATGATGTGGTCTTTAGAAGAGAAGAAATTTCGCTCCGTCGG--------TTGCT- 374
consensus_13017#4 CCTCCATGGCCAC-CGTGCCGGCGCTGCGGCTCGGCTCCCCCGCCGCG-----CTCCTAG 189
consensus_13017#1 ATAGGTGGGGAGCTGAGGGGGATCCCACGGTTTGTCTATAATGGCGTGGGACACCGCGGG 412
* * *
consensus_13017#0 AATGGGCCTATGCGTTAA-GTT-AAACCTAGGTATGTTAGCCACTGATGTAAGATAGTCT 1538
consensus_13017#2 AATGGGCCTATGCGTTAA-GTT-AAACCTAGGTATGCTAGCCACTGATGTAAGATAGTCT 445
consensus_13017#3 CACGAA---ATGCATTGATGAT-GCTTCCCTGTGGGCTG---AAAGAATTAAAATAGATG 427
consensus_13017#4 NAGNGNNCCGCCCGCCGCGGTG-GCTGC--GGTGCGGCGGCGGCGGTGTCGGGGGAGGGG 246
consensus_13017#1 TGACGGGATAGGGGTGAGGGAGTGCCCCCCCACGCAGCGG-GGTTCACCTGGGAGAGGGC 471
* * **
consensus_13017#0 GCCACCGCATCT-CCATCTTTTGTAA-ATGATCATCTTCCACCCTT-TCCGAGTTCCATG 1595
consensus_13017#2 GCCACCGCATCT-CCATCTTTTGTAA-ATGATCATCTTCCACCCTT-TCCGAGTTCCATG 502
consensus_13017#3 ATCGACATTTCT-TTGGAAAATATAGCGAGAAGATGGTTGAGTTTT-TACAGAGCTC--G 483
consensus_13017#4 GAGGGGGAGTGG-GAGTGGCGCGGAG---GGGGATGGCGTGCTCCG-TGGAGGCC----- 296
consensus_13017#1 GGAGAGGCGCGATGTGTCCGTTGTGTTTCCGTGAGAACAGACGCAGGTCCCAGCCCGCGG 531
* *
consensus_13017#0 TTTTGTAGTA-GCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCG--TTATGTT 1652
consensus_13017#2 TTTTGTAGTA-GCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCG--TTATGTT 559
consensus_13017#3 GTTGGCATCA-TTCATAAGAACCAT---GCTGAGAG-TATAACTTCTTTCA--TTAAGGA 536
consensus_13017#4 -TTGGCGANGCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATTAAGGAAG--AGGAGGA 353
consensus_13017#1 GAGAGTGCGA-GAGATTGTACCGACCGGCGCGCGCCTGCGTGTGGGGCAAGCCAGATATT 590
* * * *
consensus_13017#0 GGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGC 1712
consensus_13017#2 GGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGC 619
consensus_13017#3 GAGTGTTGATGAGGA---GCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAG 593
consensus_13017#4 GAA-GCGGAGGGGCAA--GGCGGGGGAAAAGAAGCTTCANAA------------------ 392
consensus_13017#1 TATCGCGGGCGGTCGCGTAGGGCGGGTTCTCTTGCCGCGCGCGTGCCCCGCGGTCTCTCA 650
* * *
consensus_13017#0 TTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGATTGGTCATG 1761
consensus_13017#2 TTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGA--------- 659
consensus_13017#3 GCT--CACCT--------------------------------------- 601
consensus_13017#4 -------------------------------------------------
consensus_13017#1 GCGCTTGTTGTGACTCGTAGCAGGGAGTTGCTCGAGGGTGTTGGGT--- 696
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||