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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[TTGCCCTCTTTGCTGGAACAATCATGGGTCTTGCATTTAGTGCCTTCGGCCTGCCAGGGTGGAGCAGTATACCAACCGGACAAGTTTATGATCAGTATTTCAAGGACAAGAAAACCGACAGCTTTGAAGCTTTTCATGTTGCCTATGTTGAGTTCTGCAAAGATTTCAACACCGTGCTACCTGGTCAAGATTTTGATACCCCATCACTCGAAAAAATTCAGAAATTCTATGATGATACTTGGAAACTGATCAACGAAGACCAAGAAAAGAAGAAAGCGTTCATGGATTACATCCGCGACAACGTCAAGGAGGCGGCGGTCGACGACAGCCTCTTCATCATGGCCGGGCTGGCGGCGCCGGCGGGAGCCATCGTCCTCAAGAGGACAGGGCAGAGCATCCCGCAGCTGAAGAGGCTGGACCTCCTCCCCAACGTCCTCTTCGTCCCGCTCTTCACTCTCGCTGCCATCATGGGAGCAACTGCAGTCCAGATGAAGCAGAGGAGCAGACACACCTGATCTCCTCATCATAATCATCTACATTGCGTCGGCAGTTATAATTTACAAATAATAACATGGATGAATGTCGATCAAATCTGCACTGCAATGTCAGCGTCAAATATATACACACGTTTTCTTTTGTAATCTTCTTTATTGTTACTGTCCATACTGATAATAATATCACACACCGGGATACGCCTTTG]
[+] EMBL AK063220 [TTGCCCTCTTTGCTGGAACAATCATGGGTCTTGCATTTAGTGCCTTCGGCCTGCCAGGGTGGAGCAGTATACCAACCGGACAAGTTTATGATCAGTATTTCAAGGACAAGAAAACCGACAGCTTTGAAGCTTTTCATGTTGCCTATGTTGAGTTCTGCAAAGATTTCAACACCGTGCTACCTGGTCAAGATTTTGATACCCCATCACTCGAAAAAATTCAGAAATTCTATGATGATACTTGGAAACTGATCAACGAAGACCAAGAAAAGAAGAAAGCGTTCATGGATTACATCCGCGACAACGTCAAGGAGGCGGCGGTCGACGACAGCCTCTTCATCATGGCCGGGCTGGCGGCGCCGGCGGGAGCCATCGTCCTCAAGAGGACAGGGCAGAGCATCCCGCAGCTGAAGAGGCTGGACCTCCTCCCCAACGTCCTCTTCGTCCCGCTCTTCACTCTCGCTGCCATCATGGGAGCAACTGCAGTCCAGATGAAGCAGAGGAGCAGACACACCTGATCTCCTCATCATAATCATCTACATTGCGTCGGCAGTTATAATTTACAAATAATAACATGGATGAATGTCGATCAAATCTGCACTGCAATGTCAGCGTCAAATATATACACACGTTTTCTTTTGTAATCTTCTTTATTGTTACTGTCCATACTGATAATAATATCACACACCGGGATACGCCTTTG]
consensusID : consensus_1302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[TTGTTATCTATCTCATCTTCCCAAATTACTGCAGAGATTTCAACACCGTGCTACCTGGTCAAGATTTTGATACCCCATCACTCGAAAAAATTCAGAAATTCTATGATGATACTTGGAAACTGATCAACGAAGACCAAGAAAAGAAGAAAGCGTTCATGGATTACATCCGCGACAACGTCAAGGAGGCGGCGGTCGACGACAGCCTCTTCATCATGGCCGGGCTGGCGGCGCCGGCGGGAGCCATCGTCCTCAAGAGGACAGGGCAGAGCATCCCGCAGCTGAAGAGGCTGGACCTCCTCCCCAACGTCCTCTTCGTCCCGCTCTTCACTCTCGCTGCCATCATGGGAGCAACTGCAGTCCAGATGAAGCAGAGGAGCAGACACACCTGATCTCCTCATCATAATCATCTACATTGCGTCGGCAGTTATAATTTACAAATAATAACATGGATGAATGTCGATCAAATCTGCACTGCAATGTCAGCGTCAAATATATACACACGTTTTCTTTTGTAATCTTCTTTATTGTTACTGTCCATACTGATAATAATATCACACACCGGGATACGCCTTTGCCAAGCTGCCAAAAAAAAAAAAAAAAAAACTCCGAGA]
[-] EMBL CF326292 [TTGTTATCTATCTCATCTTCCCAAATTACTGCAGAGATTTCAACACCGTGCTACCTGGTCAAGATTTTGATACCCCATCACTCGAAAAAATTCAGAAATTCTATGATGATACTTGGAAACTGATCAACGAAGACCAAGAAAAGAAGAAAGCGTTCATGGATTACATCCGCGACAACGTCAAGGAGGCGGCGGTCGACGACAGCCTCTTCATCATGGCCGGGCTGGCGGCGCCGGCGGGAGCCATCGTCCTCAAGAGGACAGGGCAGAGCATCCCGCAGCTGAAGAGGCTGGACCTCCTCCCCAACGTCCTCTTCGTCCCGCTCTTCACTCTCGCTGCCATCATGGGAGCAACTGCAGTCCAGATGAAGCAGAGGAGCAGACACACCTGATCTCCTCATCATAATCATCTACATTGCGTCGGCAGTTATAATTTACAAATAATAACATGGATGAATGTCGATCAAATCTGCACTGCAATGTCAGCGTCAAATATATACACACGTTTTCTTTTGTAATCTTCTTTATTGTTACTGTCCATACTGATAATAATATCACACACCGGGATACGCCTTTGCCAAGCTGCCAAAAAAAAAAAAAAAAAAACTCCGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1302#0 TTGCCCTCTTTGCTGGAACAATCATGGGTCTTGCATTTAGTGCCTTCGGCCTGCCAGGGT 60
consensus_1302#1 ------------------------------------------------------------
consensus_1302#0 GGAGCAGTATACCAACCGGACAAGTTTATGATCAGTATTTCAAGGACAAGAAAACCGACA 120
consensus_1302#1 ------------------------------------------------------------
consensus_1302#0 GCTTTGAAGCTTTTCATGTTGCCTATGTTGAGTTCTGCAAAGATTTCAACACCGTGCTAC 180
consensus_1302#1 ------TTGTTATCTATCTCATCTTCCCAAATTACTGCAGAGATTTCAACACCGTGCTAC 54
* * * ** * ** * * ***** ********************
consensus_1302#0 CTGGTCAAGATTTTGATACCCCATCACTCGAAAAAATTCAGAAATTCTATGATGATACTT 240
consensus_1302#1 CTGGTCAAGATTTTGATACCCCATCACTCGAAAAAATTCAGAAATTCTATGATGATACTT 114
************************************************************
consensus_1302#0 GGAAACTGATCAACGAAGACCAAGAAAAGAAGAAAGCGTTCATGGATTACATCCGCGACA 300
consensus_1302#1 GGAAACTGATCAACGAAGACCAAGAAAAGAAGAAAGCGTTCATGGATTACATCCGCGACA 174
************************************************************
consensus_1302#0 ACGTCAAGGAGGCGGCGGTCGACGACAGCCTCTTCATCATGGCCGGGCTGGCGGCGCCGG 360
consensus_1302#1 ACGTCAAGGAGGCGGCGGTCGACGACAGCCTCTTCATCATGGCCGGGCTGGCGGCGCCGG 234
************************************************************
consensus_1302#0 CGGGAGCCATCGTCCTCAAGAGGACAGGGCAGAGCATCCCGCAGCTGAAGAGGCTGGACC 420
consensus_1302#1 CGGGAGCCATCGTCCTCAAGAGGACAGGGCAGAGCATCCCGCAGCTGAAGAGGCTGGACC 294
************************************************************
consensus_1302#0 TCCTCCCCAACGTCCTCTTCGTCCCGCTCTTCACTCTCGCTGCCATCATGGGAGCAACTG 480
consensus_1302#1 TCCTCCCCAACGTCCTCTTCGTCCCGCTCTTCACTCTCGCTGCCATCATGGGAGCAACTG 354
************************************************************
consensus_1302#0 CAGTCCAGATGAAGCAGAGGAGCAGACACACCTGATCTCCTCATCATAATCATCTACATT 540
consensus_1302#1 CAGTCCAGATGAAGCAGAGGAGCAGACACACCTGATCTCCTCATCATAATCATCTACATT 414
************************************************************
consensus_1302#0 GCGTCGGCAGTTATAATTTACAAATAATAACATGGATGAATGTCGATCAAATCTGCACTG 600
consensus_1302#1 GCGTCGGCAGTTATAATTTACAAATAATAACATGGATGAATGTCGATCAAATCTGCACTG 474
************************************************************
consensus_1302#0 CAATGTCAGCGTCAAATATATACACACGTTTTCTTTTGTAATCTTCTTTATTGTTACTGT 660
consensus_1302#1 CAATGTCAGCGTCAAATATATACACACGTTTTCTTTTGTAATCTTCTTTATTGTTACTGT 534
************************************************************
consensus_1302#0 CCATACTGATAATAATATCACACACCGGGATACGCCTTTG-------------------- 700
consensus_1302#1 CCATACTGATAATAATATCACACACCGGGATACGCCTTTGCCAAGCTGCCAAAAAAAAAA 594
****************************************
consensus_1302#0 -----------------
consensus_1302#1 AAAAAAAAACTCCGAGA 611
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||