cluster # 13025

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Oryza sativa
cluster # 13025 cluster # 13025 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13025#0 length = 2421 sequences # 10

consensus_13025#1 length = 521 sequences # 1
consensus_13025#2 length = 107 sequences # 1

consensusID : consensus_13025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2421
fasta sequence

                              [CCGGCAGAGGAGAGGGCTCAAAGCCCCGTGCACGCGCCGCCTCTCCCTCCGCTGCGCTCCTCGCCTCCTCTCGGCTCTCGCTCTGCGCCACAGGCCCACAGCGCCGGCCGTCGCCCATCGGCGGCGTCGGGTCCCTCTCCCTCCTGCAGTCCTGCTCGAGCTCGACGACGACGACGAGTCTATGCCTCAAGCCCTAAACAGCTCCTCATAGGACCACCCAACGAATCGATCCTAGAGCCGCCACTGCATCGTCTCCTCGTCCGCCGCCGCCGCCATGTGGGCGCTCCGCCGCGCGGGCAACCCCCTCAGGGTCCGTGCCCACCAAGCTTTGAGTGCCCGTGGTTGTGCAAACCTTGAAGTAATTCTAAATGCAGATGCAAAGAATGTGGAAGAGCATCATGAGGGGGACTGTCAGAAATTGGATTGCTGTCATCAACCAAAGCCATTGGTCTGCCAACCATCATTCTCATCAGGCCGTTTCATGTGGAGTAGGGGTTTCTCTTCTCAGGCCGGTGCAAGTTCTGGTGATAAGCAGGATGAGTTGGAGGAAGGGTTTTCTGATCTGGAGGTTCCACCAGAAGCTCATAAAAAGGATTTAGATTTGACATCCGATGAGAGTTCTGATGAGGACACCATTGATGCAATTGGCTTGTCTGAAGTGGAGGCTGATGCAAAACCTGAGGAGCCGATAAAGAAGTCACAATCCACTCTTCTTAAGGCTTTGCTGGAATCTCCAAGGGTTGATGTCGCTGGAGCATTGAAAAAATGGCTTAATGATGGCAATACATTGGATAGAAGTGAGCTCTTTTATGTCCTTCTTATTCTTCGGAGGCGGAAGCTCTACATCAAAGCCTTGCAGCTTCTGGAGTATGTTGAAGAATCCAAACTAATTGATCTTGGAGAACGTGATTATGCTTCACGCGTGGATTTGGTAGCTAAAACCCACAGTATTTACAAAGCTGAAAAGTACATTGAGAATGTTCCTGCATCTCATAGGGGTGAGATTGTATACAGGACTCTTTTGGCTAACTGTGTGGCTATAGCCAATGTGAAAAAAGCAGAACAAGTCTTCAATAAGATGAAGGACCTTGGATTTCCAGTTAGCGTATTTTCTTGCAATCAGCTTCTGCTACTCTACAAGAGAGTGGACAAGAAGAAGCTTGGTGATGTTCTCACAATGATGGAAAAGGAGAATGTGAAGCCTTCCCTCTTCACTTATAAGCTCCTTGTAGATACCAAGGGTGCTGCTAGAGATATTGAAGATATGGAAAAGGTCATTCAGGCAATGCAAGCGGATGGAATTGAACCAGATCTTCTGTTTCAAGCCACAATTGCAAGGCACTACATATTTGGTGGTTATCGTGAGAAATCTGAGGCAATTTTGGAGCAAATGGTGGGGGATGATATCAATGAAAACCGTTCTGCTTGCAAATTTGTTTTACCCCTGTATGCTTTTCTTGGCAAAAATGATGATGTTGAAAGGATCTGGAAGGTTTGTGAGGCCAATGCTCGTCTAGATGAGTGCATGTCTGCAATAGAGGCTTTTGGTAAGCTTGGGGATGTTGAAAAGGCTGAGGAGATATTTGACAATATGTTCAAGACATGGAAGACACTTTCGTCCAAATACTACAATGCTATGCTGAAGGTGTATGCCAACAAAAAGCTTTTTGACAAGGGGAAGGAGCTAGCAAAGCGGA-TGGGTGATGATGGTTGCAGACTAGGGCCCTATACATTGGATTCACTTGTGAAGCTCTATTCGGATGCAGGAGAGGTGGAGAAAGCTGATTCCATATTGCATAAGCTATCATATAAGAACAAGATTAAGCCTATGTACACCACATACTTGATGCTGCTTGATAGTTATTCCAAGAAAGGAGACGTCCATAATGCAGAGAAATTGTTCAGCAAGGTGCGGCAGATGGGTTATACTGGGAGGATTAGACAGTATCAGCTGC-TTC-TTGAGGCATATCT-GAATGCAAAGA-CCCCACCTTATGGATTCAAGGAGAGGATGAAGGCTGATGACATTTTCCCCAATAGGGCTGTGGCGTCT-TTGCTTGCTGC-TACCGA-TCCATTCAACAGGAAGAACGCAATGTCTGAATT-GCTCGATTAGGTTCTTCTGTTAGCTTCATTTTGTGCCCATCTAATACATGTGCTGGTTGTCCTTCTGCCAAAATATATATGACATGACGATGAGATAATAAATTAGCCTT-AGCGATGTAATGAACTAGTAGTGTTTGCTTACCTTTTGCGGCTATTGCCTTACCGAGCAGGCGAGTAGGATTGGAATCTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCACTATCTCTTGACTTGTTAATTAGCAAACAAATGTCAGTTTTGCTAGTCCTTAAGCTAATGATATATTAAGGTTTCTTTAAAAAA]

[+] EMBL AK120125             [CCGGCAGAGGAGAGGGCTCAAAGCCCCGTGCACGCGCCGCCTCTCCCTCCGCTGCGCTCCTCGCCTCCTCTCGGCTCTCGCTCTGCGCCACAGGCCCACAGCGCCGGCCGTCGCCCATCGGCGGCGTCGGGTCCCTCTCCCTCCTGCAGTCCTGCTCGAGCTCGACGACGACGACGAGTCTATGCCTCAAGCCCTAAACAGCTCCTCATAGGACCACCCAACGAATCGATCCTAGAGCCGCCACTGCATCGTCTCCTCGTCCGCCGCCGCCGCCATGTGGGCGCTCCGCCGCGCGGGCAACCCCCTCAGGGTCCGTGCCCACCAAGCTTTGAGTGCCCGTGGTTGTGCAAACCTTGAAGTAATTCTAAATGCAGATGCAAAGAATGTGGAAGAGCATCATGAGGGGGACTGTCAGAAATTGGATTGCTGTCATCAACCAAAGCCATTGGTCTGCCAACCATCATTCTCATCAGGCCGTTTCATGTGGAGTAGGGGTTTCTCTTCTCAGGCCGGTGCAAGTTCTGGTGATAAGCAGGATGAGTTGGAGGAAGGGTTTTCTGATCTGGAGGTTCCACCAGAAGCTCATAAAAAGGATTTAGATTTGACATCCGATGAGAGTTCTGATGAGGACACCATTGATGCAATTGGCTTGTCTGAAGTGGAGGCTGATGCAAAACCTGAGGAGCCGATAAAGAAGTCACAATCCACTCTTCTTAAGGCTTTGCTGGAATCTCCAAGGGTTGATGTCGCTGGAGCATTGAAAAAATGGCTTAATGATGGCAATACATTGGATAGAAGTGAGCTCTTTTATGTCCTTCTTATTCTTCGGAGGCGGAAGCTCTACATCAAAGCCTTGCAGCTTCTGGAGTATGTTGAAGAATCCAAACTAATTGATCTTGGAGAACGTGATTATGCTTCACGCGTGGATTTGGTAGCTAAAACCCACAGTATTTACAAAGCTGAAAAGTACATTGAGAATGTTCCTGCATCTCATAGGGGTGAGATTGTATACAGGACTCTTTTGGCTAACTGTGTGGCTATAGCCAATGTGAAAAAAGCAGAACAAGTCTTCAATAAGATGAAGGACCTTGGATTTCCAGTTAGCGTATTTTCTTGCAATCAGCTTCTGCTACTCTACAAGAGAGTGGACAAGAAGAAGCTTGGTGATGTTCTCACAATGATGGAAAAGGAGAATGTGAAGCCTTCCCTCTTCACTTATAAGCTCCTTGTAGATACCAAGGGTGCTGCTAGAGATATTGAAGATATGGAAAAGGTCATTCAGGCAATGCAAGCGGATGGAATTGAACCAGATCTTCTGTTTCAAGCCACAATTGCAAGGCACTACATATTTGGTGGTTATCGTGAGAAATCTGAGGCAATTTTGGAGCAAATGGTGGGGGATGATATCAATGAAAACCGTTCTGCTTGCAAATTTGTTTTACCCCTGTATGCTTTTCTTGGCAAAAATGATGATGTTGAAAGGATCTGGAAGGTTTGTGAGGCCAATGCTCGTCTAGATGAGTGCATGTCTGCAATAGAGGCTTTTGGTAAGCTTGGGGATGTTGAAAAGGCTGAGGAGATATTTGACAATATGTTCAAGACATGGAAGACACTTTCGTCCAAATACTACAATGCTATGCTGAAGGTGTATGCCAACAAAAAGCTTTTTGACAAGGGGAAGGAGCTAGCAAAGCGGA TGGGTGATGATGGTTGCAGACTAGGGCCCTATACATTGGATTCACTTGTGAAGCTCTATTCGGATGCAGGAGAGGTGGAGAAAGCTGATTCCATATTGCATAAGCTATCATATAAGAACAAGATTAAGCCTATGTACACCACATACTTGATGCTGCTTGATAGTTATTCCAAGAAAGGAGACGTCCATAATGCAGAGAAATTGTTCAGCAAGGTGCGGCAGATGGGTTATACTGGGAGGATTAGACAGTATCAGCTGC TTC TTGAGGCATATCT GAATGCAAAGA CCCCACCTTATGGATTCAAGGAGAGGATGAAGGCTGATGACATTTTCCCCAATAGGGCTGTGGCGTCT TTGCTTGCTGC TACCGA TCCATTCAACAGGAAGAACGCAATGTCTGAATT GCTCGATTAGGTTCTTCTGTTAGCTTCATTTTGTGCCCATCTAATACATGTGCTGGTTGTCCTTCTGCCAAAATATATATGACATGACGATGAGATAATAAATTAGCCTT AGCGATGTAATGAACTAGTAGTGTTTGCTTACCTTTTGCGGCTATTGCCTTACCGAGCAGGCGAGTAGGATTGGAATCTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCACTATCTCTTGACTTGTTAATTAGCAAACAAATGTCAGTTTTGCTAGTCCTTAAGCTAATGATATATTAAGGTT           ]
[+] EMBL CB634093             [             GGGCTCAAAGCCCCGTGCACGCGCCGCCTCTCCCTCCGCTGCGCTCCTCGCCTCCTCTCGGCTCTCGCTCTGCGCCACAGGCCCACAGCGCCGGCCGTCGCCCATCGGCGGCGTCGGGTCCCTCTCCCTCCTGCAGTCCTGCTCGAGCTCGACGACGACGACGAGTCTATGCCTCAAGCCCTCAACAGCTCCTCATAGGACCACCCAACGAATCGATCCTACAGCCGCCACTGCATCGTCTCCTCGTCCGCCGCCGCCGCCATGTGGGCGCTCCGCCGCGCGGGCAACCCCCTCAGGGTCCGTGCCCACCAAGCTTTGAGTGCCCGTGGTTGTGCAAACCTTGAAGTAATTCTAAATGCAGATGCAAAGAATGTGGAAGAGCATCATGAGGGGGACTGTCAGAAATTGGATTGCTGTCATCAACCAAAGCCATTGGTCTGCCAACCATCATTCTCATCAGGCCGTTTCATGTGGAGTAGGGGTTTCTCTTCTCAGGCCGGTGCAAGTTCTGGTGATAAGCAGGATGAGTTGGAGGAAGGGTTTTCTGATCTGGACGTTCCACCAGAAGCTCATAAAAAGGATTTAGATTTGACATCCGATGAGAGTTCTGATGAGGACACCATTGATGCAATTGGCTTGTCTGAAGTGGAGGCTGATGCAAAACCTGAGGAGCCGATAAAGAAGTCACAATCCACTCTTCTTAAGGCTTTGCTGGAATCTCCAAGGGTTGATGTCGCTGGAGCATTGAAAAAATGGCTTAATGATGGCAATACATTGGATAGAAGTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB679573             [                                                                                                                                                                                                                                                                                                                      GTCCGTGCCCACCAAGCTTTGAGTGCCCGTGGTTGTGCAAACCTTGAAGTAATTCTAAATGCAGATGCAAAGAATGTGGAAGAGCATCATGAGGGGGACTGTCAGAAATTGGATTGCTGTCATCAACCAAAGCCATTGGTCTGCCAACCATCATTCTCATCAGGCCGTTTCATGTGGAGTAGGGGTTTCTCTTCTCAGGCCGGTGCAAGTTCTGGTGATAAGCAGGATGAGTTGGAGGAAGGGTTTTCTGATCTGGAGGTTCCACCAGAAGCTCATAAAAAGGATTTAGATTTGACATCCGATGAGAGTTCTGATGAGGACACCATTGATGCAATTGGCTTGTCTGAAGTGGAGGCTGATGCAAAACCTGAGGAGCCGATAAAGAAGTCACAATCCACTCTTCTTAAGGCTTTGCTGGAATCTCCAAGGGTTGATGTCGCTGGAGCATTGAAAAAATGGCTTAATGATGGCAATACATTGGATAGAAGTGAGCTCTTTTATGTCCTTCTTATTCTTCGGAGGCGGAAGCTCTACATCAAAGCCTTGCAGCTTCTGGAGTATGTTGAAGAATCCAAACTAATTGATCTTGGAGAACGTGATTATGCTTCACGCGTGGATTTGGTAGCTAAAACCCACAGTATTTACAAAGCTGAAAAGTACATTGAGAATGTTCCTGCATCTCATAGGGGTGAGATTGTATACAGGACTCTTTTGGCTAACTGTGTGGCTATAGCCAATGTGAAAAAAGCAGAACAAGTCTTCAATAAGATGAAGGACCTTGGATTTCCAGTTAGCGTATTTTCTTGCAATCAGCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB679574             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTTGGTAAGCTTGGGGATG TGAAAAGGCTGAGGAGATATTTGACAATATGTTCAAGACATGGAAGACACTTTCGTCCAAATACTACAATGCTATGCTGAAGGTGTATGCCAACAAAAAGCTTTTTGACAAGGGGAAGGAGCTAGCAAAGCGGA TGGGTGATGATGGTTGCAGACTAGGGCCCTATACATTGGATTCACTTGTGAAGCTCTATTCGGATGCAGGAGAGGTGGAGAAAGCTGATTCCATATTGCATAAGCTATCATATAAGAACAAGATTAAGCCTATGTACACCACATACTTGATGCTGCTTGATAGTTATTCCAAGAAAGGAGACGTCCATAATGCAGAGAAATTGTTCAGCAAGGTGCGGCAGATGGGTTATACTGGGAGGATTAGACAGTATCAGCTGC TTC TTGAGGCATATCT GAATGCAAAGA CCCCACCTTATGGATTCAAGGAGAGGATGAAGGCTGATGACATTTTCCCCAATAGGGCTGTGGCGTCT TTGCTTGCTGC TACCGA TCCATTCAACAGGAAGAACGCAATGTCTGAATT GCTCGATTAGGTTCTTCTGTTAGCTTCATTTTGTGCCCATCTAATACATGTGCTGGTTGTCCTTCTGCCAAAATATATATGACATGACGATGAGATAATAAATTAGCCTT AGCGATGTAATGAACTAGTAGTGTTTGCTTACCTTTTGCGGCTATTGCCTTACCGAGCAGGCGAGTAGGATTGGAATCTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCACTATCTCTTGACTTGTTAATTAGCAAACAAATGTCAGTTTAGGTAGTCCTTAAGCTAATGATATATTAAGGTTTCT        ]
[-] EMBL CB634094             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGATATTTGACAATATGTTCAAGACATGGAAGACACTTTCGTCCAAATACTACAATGCTATGCTGAAGGTGTATGCCAACAAAAAGCTTTTTGACAAGGGGAAGGAGCTAGCAAAGCGGA TGGGTGATGATGGTTGCAGACTAGGGCCCTATACATTGGATTCACTTGTGAAGCTCTATTCGGATGCAGGAGAGGTGGAGAAAGCTGATTCCATATTGCATAAGCTATCATATAAGAACAAGATTAAGCCTATGTACACCACATACTTGATGCTGCTTGATAGTTATTCCAAGAAAGGAGACGTCCATAATGCAGAGAAATTGTTCAGCAAGGTGCGGCAGATGGGTTATACTGGGAGGATTAGACAGTATCAGCTGC TTC TTGAGGCATATCT GAATGCAAAGA CCCCCCCTTATGGATTCAAGGAGAGGATGAAGGCTGATGACATTTTCCCCAATAGGGCTGTGGCGTCT TTGCTTGCTGC TACCGA TCCATTCAACAGGAAGAACGCAATGTCTAAATT GCTCGATTAGGTTCTTCTGTTAGCTTCATTTTGTGCCCATCTAATACATGTGCTGGTTGTCCTTCTGCCAAAATATATATGACATGACGATGAGATAATAAATTAGCCTT AGCGATGTAATGAACTAGTAGTGTTTGCTTACCTTTTGCGGCTATTGCCTTACCGAGCAGGCGAGTAGGATTGGAATCTTATGAAAGGTAATCTTAGTTCTATTTTGTCTACTTCATga                                                                                            ]
[+] EMBL C93513               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAAGGAGCTAGCAAAG GNANTGGGTGATGATGGTTGCAGACTAGGGCCCTATACATTGGATTCACTTGTGAAGCTCTATTCGGATGCAGGAGAGGTGGAGAAAGCTGATTCCATATTGCATAAGCTATCATATAAGAACAAGATTAAGCCTATGTACACCACATACTTGATGCTGCTTGATAGTTATTCCAAGAAAGGAGACGTCCATAATGCAGAGAAATTGTTCAGCAAGGTNCGGCAGATGGGTTATACTGGGAGGATTAGACAGTATCAGCTGC TTC TTGAGGCATATCT GAATGCAAAGA CCCCACCTTATGGATTCAAGGAGAGGATGAAGGCTGATGACATTTTCCCCAATAGGGCTGTGGCGTCT TTGCTTGCTGC TACCGA TCCATTCAACAGGAAGAACGCAATGTCTGAATT GCTCGATTAGGGTCTTCT                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA759925             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGCCCTATACATTGGATTCACTTGTGAAGCTCTATTGGGATGCAGGAGAGGTGGAGAAAGCTGATTCCATATTGCATAAGCTCTCATATAAGAACAAGATTAAGCCTATGTACACCACATACTTGATGCTGCTTGATAGTTATTCCAAGAAAGGAGACGTCCATAATGCAGAGAAATTGTTCAGCAAGGTGCGGCAGATGGGTTATACTGGGAGGATTAGACAGTATCAGCTGC TTC TTGAGGCATATCT GAATGCAAAGA CCCCACCTTATGGATTCAAGGAGAGGATGAAGGCTGATGACATTTTCCCCAATAGGGCTGTGGCGTCT TTGCTTGCTGC TACCGA TCCATTCAACAGGAAGAACGCAATGTCTAAATT GCTCGATTAGGTTCTTCTGTTAGCTTCATTTTGTGCCCATCTAATACATGTGCTGGTTGTCCTTCTGCCAAAATATATATGACATGACGATGAGATAATAAATTAGCCTT AGCGATGTAATGAACTAGTAGTGTTTGCTTACCTTTTGCGGCTATTGCCTTACCGAGCAGGCGAGTAGGATTGGAATCTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCACTATCTCTTGACTTGTTAATTAGCAAACAAATGTCAGTTTTGCTAaaaaaaaa                               ]
[+] EMBL BI811716             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tCGGCAGATGGGTTATACTGGGAGGATTAGACAGTATCAGCTGCTTTCTTTGAGGCATATCTGGAATGC AAGA CCCCACCTTATGGATTCAAGGAGAGGATGAA GCTGATGACATTTTCCCCAATAGGGCTGTGGCGTCTGTTGCTTGCTGCGTTCCGAGTCCATTC ACAGGAAGAACGCAATGTCTAAATTGGCTCGATTAGGTTCTTCTGTTAGCTTCA TTTGTGCCCATCTAATACATGTGCTGGTTGTCCTTCTGCC AAATATATATGACATGACGATGAGATAATAAATTAGCCTTGAGCGATGTAATGAACTAGTAGTGTTTGCTTACCTTTTGCGGCTATTGCCTTACCGAGCAGGCGAGTAGGATTGGAATCTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCACTATCTCTTGACTTGTTAATTAGCAAACAAATGTCAGTTTTGCTAaaaaaaaaa                              ]
[-] EMBL CF331189             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATGCAAAGACCCCCACCTTA GGATTCAAGGAGAGGATGAAGGCTGATGACATTTTCCCCAATAGGGCTGTGGCGTCT TTGCTTGCTGC TACCGA TCCATTCAACAGGAAGAACGCAATGTCTGAATT GCTCGATTAGGTTCTTCTGTTAGCTTCATTTTGTGCCCATCTAATACATGTGCTGGTTGTCCTTCTGCCAAAATATATATGACATGACGATGAGATAATAAATTAGCCTT AGCGATGTAATGAACTAGTAGTGTTTGCTTACCTTTTGCGGCTATTGCCTTACCGAGCAGGCGAGTAGGATTGGAATCTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCACTATCTCTTGACTTGTTAATTAGCAAACAAATGTCAGTTTTGCTAGTCCTTAAGCTAATGATATATTAAGGTTTCTTTAAAAAA]
[+] EMBL CF331190             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATGCAAAGA CCCCACCTTATGGATTCAAGGAGAGGATGAAGGCTGATGACATTTTCCCCAATAGGGCTGTGGCGTCT TTGCTTGCTGC TACCGA TCCATTCAACAGGAAGAACGCAATGTCTGAATT GCTCGATTAGGTTCTTCTGTTAGCTTCATTTTGTGCCCATCTAATACATGTGCTGGTTGTCCTTCTGCCAAAATATATATGACATGACGATGAGATAATAAATTAGCCTT AGCGATGTAATGAACTAGTAGTGTTTGCTTACCTTTTGCGGCTATTGCCTTACCGAGCAGGCGAGTAGGATTGGAATCTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCACTATCTCTTGACTTGTTAATTAGCAAACAAATGTCAGTTTTGCTAGTCCTTAAGCTAATGATATATTAAGGTTTCTTTAAAAA ]




>consensus_13025#0
CCGGCAGAGGAGAGGGCTCAAAGCCCCGTGCACGCGCCGCCTCTCCCTCCGCTGCGCTCC
TCGCCTCCTCTCGGCTCTCGCTCTGCGCCACAGGCCCACAGCGCCGGCCGTCGCCCATCG
GCGGCGTCGGGTCCCTCTCCCTCCTGCAGTCCTGCTCGAGCTCGACGACGACGACGAGTC
TATGCCTCAAGCCCTAAACAGCTCCTCATAGGACCACCCAACGAATCGATCCTAGAGCCG
CCACTGCATCGTCTCCTCGTCCGCCGCCGCCGCCATGTGGGCGCTCCGCCGCGCGGGCAA
CCCCCTCAGGGTCCGTGCCCACCAAGCTTTGAGTGCCCGTGGTTGTGCAAACCTTGAAGT
AATTCTAAATGCAGATGCAAAGAATGTGGAAGAGCATCATGAGGGGGACTGTCAGAAATT
GGATTGCTGTCATCAACCAAAGCCATTGGTCTGCCAACCATCATTCTCATCAGGCCGTTT
CATGTGGAGTAGGGGTTTCTCTTCTCAGGCCGGTGCAAGTTCTGGTGATAAGCAGGATGA
GTTGGAGGAAGGGTTTTCTGATCTGGAGGTTCCACCAGAAGCTCATAAAAAGGATTTAGA
TTTGACATCCGATGAGAGTTCTGATGAGGACACCATTGATGCAATTGGCTTGTCTGAAGT
GGAGGCTGATGCAAAACCTGAGGAGCCGATAAAGAAGTCACAATCCACTCTTCTTAAGGC
TTTGCTGGAATCTCCAAGGGTTGATGTCGCTGGAGCATTGAAAAAATGGCTTAATGATGG
CAATACATTGGATAGAAGTGAGCTCTTTTATGTCCTTCTTATTCTTCGGAGGCGGAAGCT
CTACATCAAAGCCTTGCAGCTTCTGGAGTATGTTGAAGAATCCAAACTAATTGATCTTGG
AGAACGTGATTATGCTTCACGCGTGGATTTGGTAGCTAAAACCCACAGTATTTACAAAGC
TGAAAAGTACATTGAGAATGTTCCTGCATCTCATAGGGGTGAGATTGTATACAGGACTCT
TTTGGCTAACTGTGTGGCTATAGCCAATGTGAAAAAAGCAGAACAAGTCTTCAATAAGAT
GAAGGACCTTGGATTTCCAGTTAGCGTATTTTCTTGCAATCAGCTTCTGCTACTCTACAA
GAGAGTGGACAAGAAGAAGCTTGGTGATGTTCTCACAATGATGGAAAAGGAGAATGTGAA
GCCTTCCCTCTTCACTTATAAGCTCCTTGTAGATACCAAGGGTGCTGCTAGAGATATTGA
AGATATGGAAAAGGTCATTCAGGCAATGCAAGCGGATGGAATTGAACCAGATCTTCTGTT
TCAAGCCACAATTGCAAGGCACTACATATTTGGTGGTTATCGTGAGAAATCTGAGGCAAT
TTTGGAGCAAATGGTGGGGGATGATATCAATGAAAACCGTTCTGCTTGCAAATTTGTTTT
ACCCCTGTATGCTTTTCTTGGCAAAAATGATGATGTTGAAAGGATCTGGAAGGTTTGTGA
GGCCAATGCTCGTCTAGATGAGTGCATGTCTGCAATAGAGGCTTTTGGTAAGCTTGGGGA
TGTTGAAAAGGCTGAGGAGATATTTGACAATATGTTCAAGACATGGAAGACACTTTCGTC
CAAATACTACAATGCTATGCTGAAGGTGTATGCCAACAAAAAGCTTTTTGACAAGGGGAA
GGAGCTAGCAAAGCGGATGGGTGATGATGGTTGCAGACTAGGGCCCTATACATTGGATTC
ACTTGTGAAGCTCTATTCGGATGCAGGAGAGGTGGAGAAAGCTGATTCCATATTGCATAA
GCTATCATATAAGAACAAGATTAAGCCTATGTACACCACATACTTGATGCTGCTTGATAG
TTATTCCAAGAAAGGAGACGTCCATAATGCAGAGAAATTGTTCAGCAAGGTGCGGCAGAT
GGGTTATACTGGGAGGATTAGACAGTATCAGCTGCTTCTTGAGGCATATCTGAATGCAAA
GACCCCACCTTATGGATTCAAGGAGAGGATGAAGGCTGATGACATTTTCCCCAATAGGGC
TGTGGCGTCTTTGCTTGCTGCTACCGATCCATTCAACAGGAAGAACGCAATGTCTGAATT
GCTCGATTAGGTTCTTCTGTTAGCTTCATTTTGTGCCCATCTAATACATGTGCTGGTTGT
CCTTCTGCCAAAATATATATGACATGACGATGAGATAATAAATTAGCCTTAGCGATGTAA
TGAACTAGTAGTGTTTGCTTACCTTTTGCGGCTATTGCCTTACCGAGCAGGCGAGTAGGA
TTGGAATCTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCACTA
TCTCTTGACTTGTTAATTAGCAAACAAATGTCAGTTTTGCTAGTCCTTAAGCTAATGATA
TATTAAGGTTTCTTTAAAAAA

consensusID : consensus_13025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [CCTGGGGTTTTAGCCGCCTCCCCCTCCCCCTGGGGTTTTAGCCGCCTCTGCCCCTCTCTCTCTCTCTCTTCCCCTCTCCATCGCGGAATCCCTCCATCGCCACGACCCCGCCGTCTCCTCCGCCGCCGCCATGTGGGCGCTCCGCCGCGCGGGCAACCCCCTCAGGGTCCGTGCCTACCAAGCTTTGAGTGCCCGTGGTTGTGCAAACCTTGAAGTAATTCTAAATGCAGATGCAAAGAATGTAGAAGAGCATCATGAGCGGGACTGTCAGAAATTGGATTGCTGTCATCAACCAAAACCATTGGTCTGCCAATCATCATTCTCATCAGGCCGTTTCATGTGGAGTAGGGTTTTCTCTTCTCAGGCCGGTGCAAGTTCTGGTGATAAGCAGGATGAGTTGGAGGAAGGGTTTTCTGATCTGGAGGTTCCACCAGAAGCTGATAAAAAGGATTTAGATTTGACATCCGATGAGAGTTCTGATGAGGACACCATTGATGCAATTGGCTTGTCTCAAGTGGAGG]

[+] EMBL CB639692             [CCTGGGGTTTTAGCCGCCTCCCCCTCCCCCTGGGGTTTTAGCCGCCTCTGCCCCTCTCTCTCTCTCTCTTCCCCTCTCCATCGCGGAATCCCTCCATCGCCACGACCCCGCCGTCTCCTCCGCCGCCGCCATGTGGGCGCTCCGCCGCGCGGGCAACCCCCTCAGGGTCCGTGCCTACCAAGCTTTGAGTGCCCGTGGTTGTGCAAACCTTGAAGTAATTCTAAATGCAGATGCAAAGAATGTAGAAGAGCATCATGAGCGGGACTGTCAGAAATTGGATTGCTGTCATCAACCAAAACCATTGGTCTGCCAATCATCATTCTCATCAGGCCGTTTCATGTGGAGTAGGGTTTTCTCTTCTCAGGCCGGTGCAAGTTCTGGTGATAAGCAGGATGAGTTGGAGGAAGGGTTTTCTGATCTGGAGGTTCCACCAGAAGCTGATAAAAAGGATTTAGATTTGACATCCGATGAGAGTTCTGATGAGGACACCATTGATGCAATTGGCTTGTCTCAAGTGGAGG]




>consensus_13025#1
CCTGGGGTTTTAGCCGCCTCCCCCTCCCCCTGGGGTTTTAGCCGCCTCTGCCCCTCTCTC
TCTCTCTCTTCCCCTCTCCATCGCGGAATCCCTCCATCGCCACGACCCCGCCGTCTCCTC
CGCCGCCGCCATGTGGGCGCTCCGCCGCGCGGGCAACCCCCTCAGGGTCCGTGCCTACCA
AGCTTTGAGTGCCCGTGGTTGTGCAAACCTTGAAGTAATTCTAAATGCAGATGCAAAGAA
TGTAGAAGAGCATCATGAGCGGGACTGTCAGAAATTGGATTGCTGTCATCAACCAAAACC
ATTGGTCTGCCAATCATCATTCTCATCAGGCCGTTTCATGTGGAGTAGGGTTTTCTCTTC
TCAGGCCGGTGCAAGTTCTGGTGATAAGCAGGATGAGTTGGAGGAAGGGTTTTCTGATCT
GGAGGTTCCACCAGAAGCTGATAAAAAGGATTTAGATTTGACATCCGATGAGAGTTCTGA
TGAGGACACCATTGATGCAATTGGCTTGTCTCAAGTGGAGG

consensusID : consensus_13025#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 107
fasta sequence

                              [CTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCTTGCCG]

[+] EMBL CF313541             [CTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCTTGCCG]




>consensus_13025#2
CTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCTTGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13025#0      CCGGCAGAGGAGAGGGCTCAAAGCCCCGTGCACGCGCCGCCTCTCCCTCCGCTGCGCTCC 60
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      TCGCCTCCTCTCGGCTCTCGCTCTGCGCCACAGGCCCACAGCGCCGGCCGTCGCCCATCG 120
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GCGGCGTCGGGTCCCTCTCCCTCCTGCAGTCCTGCTCGAGCTCGACGACGACGACGAGTC 180
consensus_13025#1      ----------------------CCTGGGGTTTTAGCCGCCTCCCCCTCCCCCTGGGGTTT 38
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      TA--TGCCTCAAGCCCTAAACAGCTCCTCATAGGACCACCCAACGAATCGATCCTAGAGC 238
consensus_13025#1      TAGCCGCCTCTGCCCCTCTCTCTCTCTCTCTTCCCCTCTCCATCGCGG-AATCCCTCCAT 97
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      CGCCACTGCATCGTCTCCTCGTCCGCCGCCGCCGCCATGTGGGCGCTCCGCCGCGCGGGC 298
consensus_13025#1      CGCCACGACCCCGCCGTCTCCTCCGCCGCCGC---CATGTGGGCGCTCCGCCGCGCGGGC 154
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      AACCCCCTCAGGGTCCGTGCCCACCAAGCTTTGAGTGCCCGTGGTTGTGCAAACCTTGAA 358
consensus_13025#1      AACCCCCTCAGGGTCCGTGCCTACCAAGCTTTGAGTGCCCGTGGTTGTGCAAACCTTGAA 214
consensus_13025#2      -------------CTTATGAATGTTAATCTT--AGTTCT----ATTTTGTCTACTTCATT 41
                                        **      ** ***  *** *      ** **   ** *    

consensus_13025#0      GTAATTCTAAATGCAGATGCAAAGAATGTGGAAGAGCATCATGAGGGGGACTGTCAGAAA 418
consensus_13025#1      GTAATTCTAAATGCAGATGCAAAGAATGTAGAAGAGCATCATGAGCGGGACTGTCAGAAA 274
consensus_13025#2      GACGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----AAACC 96
                       *   *   ***   * *   *** **     ** *  *  *  *     *     * *  

consensus_13025#0      TTGGATTGCTGTCATCAACCAAAGCCATTGGTCTGCCAACCATCATTCTCATCAGGCCGT 478
consensus_13025#1      TTGGATTGCTGTCATCAACCAAAACCATTGGTCTGCCAATCATCATTCTCATCAGGCCGT 334
consensus_13025#2      CTGTCTTGCCG------------------------------------------------- 107
                        **  **** *                                                 

consensus_13025#0      TTCATGTGGAGTAGGGGTTTCTCTTCTCAGGCCGGTGCAAGTTCTGGTGATAAGCAGGAT 538
consensus_13025#1      TTCATGTGGAGTAGGGTTTTCTCTTCTCAGGCCGGTGCAAGTTCTGGTGATAAGCAGGAT 394
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GAGTTGGAGGAAGGGTTTTCTGATCTGGAGGTTCCACCAGAAGCTCATAAAAAGGATTTA 598
consensus_13025#1      GAGTTGGAGGAAGGGTTTTCTGATCTGGAGGTTCCACCAGAAGCTGATAAAAAGGATTTA 454
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GATTTGACATCCGATGAGAGTTCTGATGAGGACACCATTGATGCAATTGGCTTGTCTGAA 658
consensus_13025#1      GATTTGACATCCGATGAGAGTTCTGATGAGGACACCATTGATGCAATTGGCTTGTCTCAA 514
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GTGGAGGCTGATGCAAAACCTGAGGAGCCGATAAAGAAGTCACAATCCACTCTTCTTAAG 718
consensus_13025#1      GTGGAGG----------------------------------------------------- 521
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GCTTTGCTGGAATCTCCAAGGGTTGATGTCGCTGGAGCATTGAAAAAATGGCTTAATGAT 778
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GGCAATACATTGGATAGAAGTGAGCTCTTTTATGTCCTTCTTATTCTTCGGAGGCGGAAG 838
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      CTCTACATCAAAGCCTTGCAGCTTCTGGAGTATGTTGAAGAATCCAAACTAATTGATCTT 898
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GGAGAACGTGATTATGCTTCACGCGTGGATTTGGTAGCTAAAACCCACAGTATTTACAAA 958
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GCTGAAAAGTACATTGAGAATGTTCCTGCATCTCATAGGGGTGAGATTGTATACAGGACT 1018
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      CTTTTGGCTAACTGTGTGGCTATAGCCAATGTGAAAAAAGCAGAACAAGTCTTCAATAAG 1078
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      ATGAAGGACCTTGGATTTCCAGTTAGCGTATTTTCTTGCAATCAGCTTCTGCTACTCTAC 1138
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      AAGAGAGTGGACAAGAAGAAGCTTGGTGATGTTCTCACAATGATGGAAAAGGAGAATGTG 1198
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      AAGCCTTCCCTCTTCACTTATAAGCTCCTTGTAGATACCAAGGGTGCTGCTAGAGATATT 1258
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GAAGATATGGAAAAGGTCATTCAGGCAATGCAAGCGGATGGAATTGAACCAGATCTTCTG 1318
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      TTTCAAGCCACAATTGCAAGGCACTACATATTTGGTGGTTATCGTGAGAAATCTGAGGCA 1378
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      ATTTTGGAGCAAATGGTGGGGGATGATATCAATGAAAACCGTTCTGCTTGCAAATTTGTT 1438
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      TTACCCCTGTATGCTTTTCTTGGCAAAAATGATGATGTTGAAAGGATCTGGAAGGTTTGT 1498
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GAGGCCAATGCTCGTCTAGATGAGTGCATGTCTGCAATAGAGGCTTTTGGTAAGCTTGGG 1558
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GATGTTGAAAAGGCTGAGGAGATATTTGACAATATGTTCAAGACATGGAAGACACTTTCG 1618
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      TCCAAATACTACAATGCTATGCTGAAGGTGTATGCCAACAAAAAGCTTTTTGACAAGGGG 1678
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      AAGGAGCTAGCAAAGCGGATGGGTGATGATGGTTGCAGACTAGGGCCCTATACATTGGAT 1738
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      TCACTTGTGAAGCTCTATTCGGATGCAGGAGAGGTGGAGAAAGCTGATTCCATATTGCAT 1798
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      AAGCTATCATATAAGAACAAGATTAAGCCTATGTACACCACATACTTGATGCTGCTTGAT 1858
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      AGTTATTCCAAGAAAGGAGACGTCCATAATGCAGAGAAATTGTTCAGCAAGGTGCGGCAG 1918
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      ATGGGTTATACTGGGAGGATTAGACAGTATCAGCTGCTTCTTGAGGCATATCTGAATGCA 1978
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      AAGACCCCACCTTATGGATTCAAGGAGAGGATGAAGGCTGATGACATTTTCCCCAATAGG 2038
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GCTGTGGCGTCTTTGCTTGCTGCTACCGATCCATTCAACAGGAAGAACGCAATGTCTGAA 2098
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      TTGCTCGATTAGGTTCTTCTGTTAGCTTCATTTTGTGCCCATCTAATACATGTGCTGGTT 2158
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GTCCTTCTGCCAAAATATATATGACATGACGATGAGATAATAAATTAGCCTTAGCGATGT 2218
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      AATGAACTAGTAGTGTTTGCTTACCTTTTGCGGCTATTGCCTTACCGAGCAGGCGAGTAG 2278
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      GATTGGAATCTTATGAATGTTAATCTTAGTTCTATTTTGTCTACTTCATTGACGTGTCAC 2338
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      TATCTCTTGACTTGTTAATTAGCAAACAAATGTCAGTTTTGCTAGTCCTTAAGCTAATGA 2398
consensus_13025#1      ------------------------------------------------------------
consensus_13025#2      ------------------------------------------------------------
                                                                                   

consensus_13025#0      TATATTAAGGTTTCTTTAAAAAA 2421
consensus_13025#1      -----------------------
consensus_13025#2      -----------------------