These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1994 fasta sequence [CGTCTTCTCCAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATC-TGCCTCGAGA-TCCTCGACAAGGGCGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTG-AAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTG-CAGGGG-AGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCTACTGAAATGGAGTGGTCTATCCACATTGTCTAACCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTATGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCATTCCTGTGGACAGAAGTGAATGAAAATTTGGAGATCGATTTTGCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAANNAAAAAAAAGGGGCCCCCACCGGGGGGGAGCTCCAGTTTTTGTTCCTTTAAGGGGGGGTTAATTGCGCCCTTGGGGGAAAAAAGGGCAAAGTTGTTTCCTGGTGAAAATTGTTTCCGTTAAAATTCCACAAAAAAATAAAGCCGGAAAAAAAAAGGAAAACCCTGGGGGGCCTAAAGGGGGGGCTTACTCACATTAATTGGGTGGGCTCATTGCCCGTTTTTCAAAGGGGAAAACCGTCGGGCCCCTTGTCTTATAAATCGCCCAACCCCCGGGAAAGGGGGTTTTGGATTTTGGGGGTTTTTCCGTTTTCTCGTTAAAAAACTCGTGGGCTTGGAGTTTGGTTGGGGGGGAGGTTTAAATTTCTAAAGGGGGGAAAC] [+] EMBL AK064053 [CGTCTTCTCCAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATC TGCCTCGAGA TCCTCGACAAGGGCGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTG AAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTG CAGGGG AGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCTACTGAAATGGAGTGGTCTATCCACATTGTCTAACCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTATGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCATTCCTGTGGACAGAAGTGAATGAAAATTTGGAGA ] [+] EMBL CF308289 [CGTCTTCTCCAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATC TGCCTCGAGA TCCTCGACAAGGGCGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGC ] [+] EMBL AK101418 [ GTCTTCTCCAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATC TGCCTCGAGA TCCTCGACAAGGGCGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTG AAGAGTGGAATACTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTG CAGGGG AGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCTACTGAAATGGAGTGGTCTATC ] [+] EMBL C28308 [ CAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCNTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTNTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTNCACCGACGACCACANCGCCATC TTCCTCGAGA TCCTCGACAAGGGCGAGTTCCAGGTNTTCGG ] [+] EMBL C26504 [ ATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCNTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTTCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATCTTGCCTCGAGATTCTTCGAC ] [+] EMBL CB662634 [ CGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATC TGCCTCGAGA TCCTCGACAAGGGCGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTG AAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTG CAGGGGAAGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATA ] [+] EMBL AU100736 [ CTTACAGAGAAACTTGAAAGANTGGAATGCTAATGTTATTTCAAAGGAC AATCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTGCCAGGGG AGGTTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCTACTGAAATGGAGTGGTCTATCCACATTGTCTAACCGCCAAAaaa ] [-] EMBL CB660314 [ ATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTG CAGGGG AGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATTTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATTTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTTTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTTTGAGGAGAAAGGTTGTTTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATTTACTGAAATGGAGTGGTTTATCCCCATTGTTTAACCGCCAAAGAGTAGCAGAAACCTGGTTGGGGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTTTAATGGGCTATGGGAGACTACATG ] [+] EMBL CA765825 [ cgacgagaCAAGGGGGACCTAAAAGACT TGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCGACTGAAATGGAGTGGTCTAT CACATTGTCTAACCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTATGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCATTCCTGTGGACAGAAGTGAATGAAAATTTGGAGATCGATTTTGCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAANNAAAAAAAAGGGGCCCCCACCGGGGGGGAGCTCCAGTTTTTGTTCCTTTAAGGGGGGGTTAATTGCGCCCTTGGGGGAAAAAAGGGCAAAGTTGTTTCCTGGTGAAAATTGTTTCCGTTAAAATTCCACAAAAAAATAAAGCCGGAAAAAAAAAGGAAAACCCTGGGGGGCCTAAAGGGGGGGCTTACTCACATTAATTGGGTGGGCTCATTGCCCGTTTTTCAAAGGGGAAAACCGTCGGGCCCCTTGTCTTATAAATCGCCCAACCCCCGGGAAAGGGGGTTTTGGATTTTGGGGGTTTTTCCGTTTTCTCGTTAAAAAACTCGTGGGCTTGGAGTTTGGTTGGGGGGGAGGTTTAAATTTCTAAAGGGGGGAAAC] consensusID : consensus_13040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1386 fasta sequence [AGGCACCCCCTTCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACCAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCGGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATCTGCCTCGAGATCCTCGACAAGGGCGAGCTCCACGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGGTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTGAAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGACATGTGAGGAGAGATTGAAGGATGTGCAGGGGAGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAACCACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATATGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCTCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACTTAAAAGACTATGATTTCTGAGGTGAATTCCCTGTAGTTCCACAATGATCTTGTGTCTGTATTATAATAACTTTGTCTGACTTATGGCTAACATTTTGGTTCAACACGTTATCTTCTAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAACAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTCTGCTACTTGCAATATGCTGAAATGGAGTGGTCTATCCCCATGGTCTACTAT] [+] EMBL CB660315 [AGGCACCCCCTTCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACCAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCGGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATCTGCCTCGAGATCCTCGACAAGGGCGAGCTCCACGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGGTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTGAAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGACATGTGAGGAGAGATTGAAGG ] [-] EMBL CB662635 [ GAAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATAGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTGCAGGGGAGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAACCACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATATGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCTCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACTTAAAAGACTATGATTTCTGAGGTGAATTCCCTGTAGTTCCACAATGATCTTGTGTCTGTATTATAATAACTTTGTCTGACTTATGGCTAACATTTTGGTTCAACACGTTATCTTCTAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAACAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTCTGCTACTTGCAATATGCTGAAATGGAGTGGTCTATCCCCATGGTCTACTAT] consensusID : consensus_13040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [AAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCCACTGAAATGGAGTGGTCTATCCACATTGCATCCCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTATGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTTT] [-] EMBL CF308290 [AAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCCACTGAAATGGAGTGGTCTATCCACATTGCATCCCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTATGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13040#0 CGTCTTCTCCAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAG 60 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 --------------------------------------------AGGCACCCCCTTCTAG 16 consensus_13040#0 GGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCG 120 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 GGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCG 76 consensus_13040#0 GCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTG 180 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 GCTGACCAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCGGCGGTTCGAGATCGCGTG 136 consensus_13040#0 CTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCT 240 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 CTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCT 196 consensus_13040#0 CCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCT 300 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 CCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCT 256 consensus_13040#0 CCTCAAGGCCTTCTCCACCGACGACCACACCGCCATCTGCCTCGAGATCCTCGACAAGGG 360 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 CCTCAAGGCCTTCTCCACCGACGACCACACCGCCATCTGCCTCGAGATCCTCGACAAGGG 316 consensus_13040#0 CGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGAT 420 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 CGAGCTCCACGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGGTCCACGAGAT 376 consensus_13040#0 CGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCAC 480 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 CGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCAC 436 consensus_13040#0 CATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAA 540 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 CATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAA 496 consensus_13040#0 GGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACC 600 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 GGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACC 556 consensus_13040#0 ATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTGA 660 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 ATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTGA 616 consensus_13040#0 AGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTG 720 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 AGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTG 676 consensus_13040#0 TGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTGCAGGGGAG 780 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 TGAGATTGAGCCATCTATTCTACGGACATGTGAGGAGAGATTGAAGGATGTGCAGGGGAG 736 consensus_13040#0 GGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGA 840 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 GGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGA 796 consensus_13040#0 AAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGG 900 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 AACCACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGG 856 consensus_13040#0 TGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGG 960 consensus_13040#2 --------------------------------------------------------AAGG 4 consensus_13040#1 TGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGG 916 **** consensus_13040#0 CAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGA 1020 consensus_13040#2 CAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGA 64 consensus_13040#1 CAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGA 976 ************************************************************ consensus_13040#0 GCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTC-CTC 1079 consensus_13040#2 GCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTC-CTC 123 consensus_13040#1 GCATTGCAAATATGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCTCTC 1036 *********** ******************************************** *** consensus_13040#0 CACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAA 1139 consensus_13040#2 CACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAA 183 consensus_13040#1 CACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACTTAA 1096 ******************************************************** *** consensus_13040#0 AAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTAC-ATGGAGATGCAG 1198 consensus_13040#2 AAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTAC-ATGGAGATGCAG 242 consensus_13040#1 AAGACTATGATTTCTGAGG-TGA----------ATTCCCTGTAGTTCCACAATGATCTTG 1145 ******************* *** ***** *** ** * * *** * consensus_13040#0 TGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGA 1258 consensus_13040#2 TGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGA 302 consensus_13040#1 TGTCTGTATT---ATAATAACTTTGTCTGACTTATGGCTAACATTTTGGTTCAACACGTT 1202 *** * * * * ** ******* * *** * * * * * consensus_13040#0 ATATT-TGTGTAACCGCAATGTACGCTACTTGCAATCTACTGAAATGGAGTGGTCTATCC 1317 consensus_13040#2 ATATT-TGTGTAACCGCAATGTACGCTACTTGCAATCCACTGAAATGGAGTGGTCTATCC 361 consensus_13040#1 ATCTTCTAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTT---- 1258 ** ** * * * ** * * ** * * ** *** **** * * consensus_13040#0 ACATTGTCTAACCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGT 1377 consensus_13040#2 ACATTGCATC-CCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGT 420 consensus_13040#1 ----TGT-------CTGAGGAGAACAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGG 1307 ** * * *** * * *** *** ********** ** * consensus_13040#0 AA------ATCTG-GTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTA 1430 consensus_13040#2 AA------ATCTG-GTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTA 473 consensus_13040#1 AAGGGAATATTTGTGTAACCGCAATGTCTGCTACTTGCAATATGCTGAAATGGAGTGGTC 1367 ** ** ** ** * * ** ** * *** * * ** *** ** * consensus_13040#0 TGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCATTCCTGTGGACAGAA 1490 consensus_13040#2 TGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCAA------AAAAAAAA 527 consensus_13040#1 TATCCCCATGGTCTAC-TAT---------------------------------------- 1386 * * **** * * consensus_13040#0 GTGAATGAAAATTTGGAGATCGATTTTGCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAA 1550 consensus_13040#2 AAAAAAAAACACTGTCATGCCGTTTT---------------------------------- 553 consensus_13040#1 ------------------------------------------------------------ consensus_13040#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAA 1610 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 ------------------------------------------------------------ consensus_13040#0 AAAAANNAAAAAAAAGGGGCCCCCACCGGGGGGGAGCTCCAGTTTTTGTTCCTTTAAGGG 1670 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 ------------------------------------------------------------ consensus_13040#0 GGGGTTAATTGCGCCCTTGGGGGAAAAAAGGGCAAAGTTGTTTCCTGGTGAAAATTGTTT 1730 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 ------------------------------------------------------------ consensus_13040#0 CCGTTAAAATTCCACAAAAAAATAAAGCCGGAAAAAAAAAGGAAAACCCTGGGGGGCCTA 1790 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 ------------------------------------------------------------ consensus_13040#0 AAGGGGGGGCTTACTCACATTAATTGGGTGGGCTCATTGCCCGTTTTTCAAAGGGGAAAA 1850 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 ------------------------------------------------------------ consensus_13040#0 CCGTCGGGCCCCTTGTCTTATAAATCGCCCAACCCCCGGGAAAGGGGGTTTTGGATTTTG 1910 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 ------------------------------------------------------------ consensus_13040#0 GGGGTTTTTCCGTTTTCTCGTTAAAAAACTCGTGGGCTTGGAGTTTGGTTGGGGGGGAGG 1970 consensus_13040#2 ------------------------------------------------------------ consensus_13040#1 ------------------------------------------------------------ consensus_13040#0 TTTAAATTTCTAAAGGGGGGAAAC 1994 consensus_13040#2 ------------------------ consensus_13040#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||