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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1034 fasta sequence
[CAGNGAACGCTTGGGCGANNTCGATCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCACGCACACGCGCCCTTCCACCGACTCGTCAGCTTAGAGCACCGCAAGCGCGCANAG-CAGCAAAGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGGCCACCGGCAGCAAGCGTGCCCTCTGCGCCTCCGACTTCTGGCCGTCGGCGTCGCAGGAAGCCGCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGCGGCAGAGGAGCCGACCAAGAAGCGGGAGCGGAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAA-GGCGCGCGCGTCTGGCTCGGCACCTTCGCCACCGCCGAGGCGGCGGCCCGCGCCTACGACTGCGCCGCCCGCCGCATCCGCGGGGCCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTCGACGACCCGGCCGCCGACGGCCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTCATGGACTACGACGCCGTCATGGCGGGCTTCTTCCACCAGCCCTACGTCGTCGCCGACGGCGTGCCGGCCGTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACCTGCCGCCGCAGCCGCAGCAGGACGCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTG-TTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAATGCAATTTGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSC100571 [CAGNGAACGCTTGGGCGANNTCGATCGCTTTGCAAGCAAAACGNCCCAACTNTCCCGNACGCACACGCGCCCTTCCACCGACTCGTCAACTTAGAGCACCGCAAGCGCGCAGAG CAGCAAAGATGTNTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGGCCACCGGCAGCAAGNNTNCCCTCTGCGNCTCCGACTTCTGGCCGTCGGCGT ]
[+] EMBL C28922 [ TCGCTTTGCAAGCAAAACGACCCAACTCTCCCGCACGCACACGCGCCCTTCCACCGACTCGTCAGCTTAGAGCACCGCAAGCGCGCANAG CAGCAAAGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGGCCACCGGCAGCAAGCGTGCCCTCTGCGCCTCCNACTTCTGGCCGTCGGCGTCGGAGGAAGCCGCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGCGGCAGAGGAGCCGACCAAGAAGCGGGAGCGNAAGACGNTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAG ]
[+] EMBL C28390 [ TCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCACGCACACGCGCCCTTCCACCGACTCGTCAGCTTAGAGCACCGNAAGCGCGCANAG CAGCAAAGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGNGAAGNCCACCGNGCGGCCACCGGCAGCAAGCGTGCCCTCTGCGNCTCCGACTTNTGGNCGTCGGCGTCGCAGGAAGNCGTCGACTTCGACCACCTCACCGNCCCCTGCACCTTCACCCCCGACCAAGNGGCAGAGGAGCC ]
[+] EMBL C96711 [ CAAGCAAAACGCCCCAACTCTCCCGCACGCACACGCGCCCTTCCACCGACTCGTCAGCTTAGAGCACCGCAAGCGCGCACAGCCAGCAAAGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGGCCACCGGCAGCAAGCGTGCCCTCTGCGCCTCCGACTTCTGGCCGTCGGCGTCGCAGGAAGCCGCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGCGGCAGAGGAGCCGACCAAGAAGCGGGAGCGGAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAA GGCGCGCGCGTCT ]
[+] EMBL AY297447 [ GCTTAGAGCACCGCAAGCGCGCACAGCCAGCAAAGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGGCCACCGGCAGCAAGCGTGCCCTCTGCGCCTCCGACTTCTGGCCGTCGGCGTCGCAGGAAGCCGCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGCGGCAGAGGAGCCGACCAAGAAGCGGGAGCGGAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAAGGGCGCGCGCGTCTGGCTCGGCACCTTCGCCACCGCCGAGGCGGCGGCCCGCGCCTACGACTGCGCCGCCCGCCGCATCCGCGGGGCCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTCGACGACCCGGCCGCCGACGGCCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTCATGGACTACGACGCCGTCATGGCGGGCTTCTTCCACCAGCCCTACGTCGTCGCCGACGGCGTGCCGGCCGTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACCTGCCGCCGCAGCCGCAGCAGGACGCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTGTTTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTT ]
[+] EMBL AU083417 [ GAGGACCCGCCACTCGACGACCCGGCCGCCGACGGCCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTCATGGACTACGACGCCGTCATGGCGGGCTTCTTCCACCAGCCCTACGTCGTCGCCGACGGCGTGCCGGCCGTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACCTGCCGCCGCAGCCGCAGCAGGACGCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTGTTTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAATGCAATTTGTATTTCAAAAAAAAA ]
[+] EMBL AU083412 [ CCNTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACNTGCCGCCGCAGCCGCAGCAGGACGCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTG TTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAATGCAATTTGTATTTAAAAAAAAAAAAAA ]
[+] EMBL C96712 [ AGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTG TTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU092920 [ CTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTG TTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAATGCAATTTGTATTTAAAAAAA ]
consensusID : consensus_13043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence
[GCTCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCGCGCGTCTGGCTCGGCACCTTCGCCACCGCCGAGGCGGCGNCCCGCGCCTACGACCGCGCCGCCCGCCGCATCCGCGGGGCCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTCGACGACCCGGCCGCCGACGGCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTCATGGACTACGACGNCGTCATGGCGGGCTTNTTNCACCAGCCCTANGTNGTNGNCGAGGGTTGTCGGNCGTGCGGGNGAGGAGGNGNNANGGTGGNGTACGTGAANAGGANTTGTNGNTGAGNCGTAGTAGGACGNGGGGGTTGGAGTTTGGAGTTTGATAAGATNAGAAGGNGGTG]
[+] EMBL OS0698A [GCTCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCGCGCGTCTGGCTCGGCACCTTCGCCACCGCCGAGGCGGCGNCCCGCGCCTACGACCGCGCCGCCCGCCGCATCCGCGGGGCCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTCGACGACCCGGCCGCCGACGGCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTCATGGACTACGACGNCGTCATGGCGGGCTTNTTNCACCAGCCCTANGTNGTNGNCGAGGGTTGTCGGNCGTGCGGGNGAGGAGGNGNNANGGTGGNGTACGTGAANAGGANTTGTNGNTGAGNCGTAGTAGGACGNGGGGGTTGGAGTTTGGAGTTTGATAAGATNAGAAGGNGGTG]
consensusID : consensus_13043#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 317 fasta sequence
[GCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGAGGAGCCGACCAAGAAGCGGGAGCGNAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAAGGGCGCGCGCTTTTGGCTCGGCACCTTCGCCANCGCCGAGNCGGCGGCCCGCGNCTACAACCGCNNCGCCCGCNGCATCCGCGGGGCCAAGGCCAAGGTTAACTTCCCCAACGAGGACCCGCCACTCGACGACCNGGTCGCCGACGGCCACAANCACGGCGGCGCGCCATT]
[+] EMBL C28551 [GCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGAGGAGCCGACCAAGAAGCGGGAGCGNAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAAGGGCGCGCGCTTTTGGCTCGGCACCTTCGCCANCGCCGAGNCGGCGGCCCGCGNCTACAACCGCNNCGCCCGCNGCATCCGCGGGGCCAAGGCCAAGGTTAACTTCCCCAACGAGGACCCGCCACTCGACGACCNGGTCGCCGACGGCCACAANCACGGCGGCGCGCCATT]
[+] EMBL C28565 [ CCGACTTCGACCACCTNACCGNCCCCTNCACCTTCACCCCCGACCAAGAGGAGCCGACCAAGAAGCGGGA CGAAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAAGGGCGCGCGCTTTTGGNTCGGCACCTTCGNCACCGCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13043#0 CAGNGAACGCTTGGGCGANNTCGATCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCAC 60
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 ------------------------------------------------------------
consensus_13043#0 GCACACGCGCCCTTCCACCGACTCGTCAGCTTAGAGCACCGCAAGCGCGCANAGCAGCAA 120
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 ------------------------------------------------------------
consensus_13043#0 AGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGG 180
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 ------------------------------------------------------------
consensus_13043#0 CCACCGGCAGCAAGCGTGCCCTCTGCGCCTCCGACTTCTGGCCGTCGGCGTCGCAGGAAG 240
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 ------------------------------------------------------------
consensus_13043#0 CCGCCGACTTCG--ACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGCGGCAGA 298
consensus_13043#2 --GCCGACTTCG--ACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAG------A 50
consensus_13043#1 --GCTCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCGCGCGTCTGGCTCGGCACCTTC 58
** *** * * ** * ** * * * * * * * * * *
consensus_13043#0 GGAGCCGACCAAGAAGCGG---GAGCGGAAGACGCTGTA--CCGTGGCATC----AGGCG 349
consensus_13043#2 GGAGCCGACCAAGAAGCGG---GAGCGNAAGACGCTGTA--CCGTGGCATC----AGGCG 101
consensus_13043#1 GCCACCGCCGAGGCGGCGNCCCGCGCCTACGACCGCGCCGCCCGCCGCATCCGCGGGGCC 118
* *** * * * *** * ** * *** * *** ***** ***
consensus_13043#0 GCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAA--GG-CGC--GCGCG 404
consensus_13043#2 GCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAA--GGGCGC--GCGCT 157
consensus_13043#1 AAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTCGACGACCCGGCCGCCGACGGC 178
**** ** * * * ** ** **** ** ** *** ** *** **
consensus_13043#0 TCTGGCTCGGCACCTTCGCCACCGCCGAGGCGGCGGCCCGCGC-CTACGACTGCGCC--- 460
consensus_13043#2 TTTGGCTCGGCACCTTCGCCANCGCCGAGNCGGCGGCCCGCGN-CTACAACCGCNNC--- 213
consensus_13043#1 ACAGCCACGGCGGCGCCGCCATC-CCGTGCAGGGAGTTCATGGACTACGACGNCGTCATG 237
* * **** * ***** * *** * ** * * * **** ** * *
consensus_13043#0 GCCCGCCGCATCCGCGGGGCCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTC 520
consensus_13043#2 GCCCGCNGCATCCGCGGGGCCAAGGCCAAGGTTAACTTCCCCAACGAGGACCCGCCACTC 273
consensus_13043#1 GCGGGCTTNTTNCACCAGCCCTANGTNGTNGNCGAGGGTTGTCGGNCGTGCGGGNGAGGA 297
** ** * * * * ** * * * * * * * *
consensus_13043#0 GACGACCCGGCCGCCGACGGCCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTC 580
consensus_13043#2 GACGACCNGGTCGCCGACGGCCACAANCACGGCGGCGC-GCCATT--------------- 317
consensus_13043#1 GGNGNNANGGTGGNGTACGTGAANAGGANTTGTNGNTGAGNCGTAGTAGGACGNGGGGGT 357
* * ** * *** * * * * * * *
consensus_13043#0 ATGGACTACGACGCCGTCATGGCGGGCTTCTTCCACCAGCCCTACGTCGTCGCCGACGGC 640
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 TGGAGTTTGGAGTTTGATAAGATNAGAAGGNGGTG------------------------- 392
consensus_13043#0 GTGCCGGCCGTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACCTGCCG 700
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 ------------------------------------------------------------
consensus_13043#0 CCGCAGCCGCAGCAGGACGCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCC 760
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 ------------------------------------------------------------
consensus_13043#0 GTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTGTTTTTAA 820
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 ------------------------------------------------------------
consensus_13043#0 TTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGT 880
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 ------------------------------------------------------------
consensus_13043#0 TTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAA 940
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 ------------------------------------------------------------
consensus_13043#0 GTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAATGCAATTT 1000
consensus_13043#2 ------------------------------------------------------------
consensus_13043#1 ------------------------------------------------------------
consensus_13043#0 GTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1034
consensus_13043#2 ----------------------------------
consensus_13043#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||