These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1890 fasta sequence [TCCTCCTCTTTCCCCTCTCCTCCCTCTCCACTCCACACGCCGTACTCGCCTCCGTCTTCCCCCCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCGCCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTTACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGGGGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAGGTGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAAGTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTTCATCCTCAACCAATTGACGAAAACATGAATCAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAAATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCGTGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATGGATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTAT--GTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTATGATGCTCCTTTGCAAAATTTGTAATTCACGGCTATTCACCAGAATGTAGTATGCTCTGGAAACTAGTGTGTCCATGCTTTGCACAATCAGGCTCATATAATTGGGGATTGGTTGGGGTATATTGAGGATAGAACACACTGGGAAGAGGATGGATGCGCTTTTGATGTAGAGATGGTGCAGTCAAAATTTGATACCAATAATATGAAGGGTATCTAAAAAAAAAAAAAAAAGA] [+] EMBL AK059720 [TCCTCCTCTTTCCCCTCTCCTCCCTCTCCACTCCACACGCCGTACTCGCCTCCGTCTTCCCCCCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCGCCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTTACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGGGGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAGGTGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAAGTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTTCATCCTCAACCAATTGACGAAAACATGAATCAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAAATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCGTGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATGGATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTGGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAATCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTAT GTGTGT ] [+] EMBL CA767195 [ TGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATGGATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCACTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCGAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGGTTGGATGGTTCTTCAGANAGATTTCTTCTGTAATGNAACTGGCAAAAGGTTGGCTATATATATGGTTATGGGGGGGTTTTGA ] [-] EMBL CB621508 [ GAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTAT GTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTATGATGCTCCTTTGCAAAATTTGTAATTCACGGCTATTCACCAGAATGTAGTATGCTCTGGAAACTAGTGTGTCCATGCTTTGCACAATCAGGCTCATATAATTGGGGATTGGTTGGGGTATATTGAGGATAGAACACACTGGGAAGAGGATGGATGCGCTTTTGATGTAGAGATGGTGCAGTCAAAATTTGATACCAATAATATGAAGGGTATCTAAAAAAAAAAAAAAAAGA] [-] EMBL CB622832 [ CTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTAT GTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTATGATGCTCCTTTGCAAAATTTGTAATTCACGGCTATTCACCAGAATGTAGTATGCTCTGGAAACTAGTGTGTCCATGCTTTGCACAATCAGGCTCATATAATTGGGGATTGGTTGGGGTATATTGAGGATAGAACACACTGGGAAGAGGATGGATGCGCTTTTGATGTAGAGATGGTGCAGTCAAAATGGGATACCAATAATATGAAGGtt ] [-] EMBL CA998946 [ GACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTAT GTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTATGATGCTCCTTTGCATAATTTGTAATTCACGGCTATTCACCAGAATG ] consensusID : consensus_13045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1871 fasta sequence [CCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCGCCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTTACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGGGGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAGTATCTTTTCAGGTGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAAGTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTTCATCCTCAACCAATTGACGAAAACATGAATCAGAACATGGGCTCAATGGACACCATGATTGGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTCACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATGGATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTATGTGTGTATGGGCTGGCATCCTAGGCGTGTAAACTTCCTATGACAAAAAAAGG] [+] EMBL CF306861 [CCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCGCCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTTACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGGGGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAGTATCTTTTCAGGTGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAAGTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTTCATCCTCAACCAATTGACGAAAACATGAATCAGAACATGGGCTCAATGGACACCATGATTGGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTCACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACA ] [+] EMBL CB621507 [ GCTCAATGGACACCATGATTGGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTCACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTG ] [+] EMBL CB622814 [ GCTCAA GCATACCATGATTGGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTCACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGG ] [+] EMBL CB622831 [ GCTCAATGGACACCATGATTGGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTCACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGG ] [+] EMBL CF336988 [ AGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAAATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATG ] [-] EMBL CB625765 [ TCGAGTCATATA TTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATGGATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTATGTGTGTATGGGCTGGCATCCTAGGCGTGTAAACTTCCTATGACAAAAAAAGG] consensusID : consensus_13045#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [GTTTCTGCACAGGTTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAATCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCCCATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTATGTGTGTTTTGACTGGCAAAAAAAAAAAAAA] [-] EMBL CF317529 [GTTTCTGCACAGGTTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAATCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCCCATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTATGTGTGTTTTGACTGGCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13045#0 TCCTCCTCTTTCCCCTCTCCTCCCTCTCCACTCCACACGCCGTACTCGCCTCCGTCTTCC 60 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 ------------------------------------------------------------ consensus_13045#0 CCCCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCG 120 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 --CCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCG 58 consensus_13045#0 CCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTT 180 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 CCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTT 118 consensus_13045#0 ACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGG 240 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 ACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGG 178 consensus_13045#0 GGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAG-----------G 289 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 GGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAGTATCTTTTCAGG 238 consensus_13045#0 TGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAA 349 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 TGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAA 298 consensus_13045#0 GTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTT 409 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 GTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTT 358 consensus_13045#0 CATCCTCAACCAATTGACGAAAACATGAATCAGAAC------------------------ 445 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 CATCCTCAACCAATTGACGAAAACATGAATCAGAACATGGGCTCAATGGACACCATGATT 418 consensus_13045#0 ------------------------------------------------------------ consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 GGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCT 478 consensus_13045#0 ------------------------------------------------------------ consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 CACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTC 538 consensus_13045#0 ------------------------------------------------------------ consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 ACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCA 598 consensus_13045#0 ------------------------------------------------TTGCTGAAGACA 457 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 ACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACA 658 consensus_13045#0 TATGAGGTCATGGTAAAGAAGTTCCAGTCCCAAATCCAGACTAGAGATACTGAGATAACA 517 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 TATGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGACTAGAGATACTGAGATAACA 718 consensus_13045#0 CATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTG 577 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 CATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTG 778 consensus_13045#0 AAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTT 637 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 AAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTT 838 consensus_13045#0 TCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATA 697 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 TCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATA 898 consensus_13045#0 CATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCT 757 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 CATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCT 958 consensus_13045#0 GCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCT 817 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 GCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCT 1018 consensus_13045#0 TTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTT 877 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 TTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTT 1078 consensus_13045#0 AAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGA 937 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 AAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGA 1138 consensus_13045#0 GCCGTGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGC 997 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 GCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGC 1198 consensus_13045#0 AGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATG 1057 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 AGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATG 1258 consensus_13045#0 GATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTT 1117 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 GATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTT 1318 consensus_13045#0 CTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAA 1177 consensus_13045#2 -----------------------GTTTCTGCACAGGTTGGCATACTCCTTTGATCCAAAA 37 consensus_13045#1 CTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAA 1378 *** ********* *********************** consensus_13045#0 GTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTT 1237 consensus_13045#2 GTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTT 97 consensus_13045#1 GTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTT 1438 ************************************************************ consensus_13045#0 GTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATG 1297 consensus_13045#2 GTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATG 157 consensus_13045#1 GTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATG 1498 ************************************************************ consensus_13045#0 CCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAG 1357 consensus_13045#2 CCTGGGTTCTTGATTGGGACTAGTGTCATACAATCTCGGGTGTATCTTTCAGGTGTCAAG 217 consensus_13045#1 CCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAG 1558 ********************************* ************************** consensus_13045#0 TCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCT 1417 consensus_13045#2 TCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCT 277 consensus_13045#1 TCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCT 1618 ************************************************************ consensus_13045#0 GATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCA 1477 consensus_13045#2 GATCAACCAATCCCATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCA 337 consensus_13045#1 GATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCA 1678 ************ *********************************************** consensus_13045#0 TCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGA 1537 consensus_13045#2 TCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGA 397 consensus_13045#1 TCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGA 1738 ************************************************************ consensus_13045#0 GTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATG 1597 consensus_13045#2 GTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATG 457 consensus_13045#1 GTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATG 1798 ************************************************************ consensus_13045#0 TTTGTCTATATATATGTTTATGTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTA 1657 consensus_13045#2 TTTGTCTATATATATGTTTATGTGTGTTTTGACTGGCAAAAAAAAAAAAAA--------- 508 consensus_13045#1 TTTGTCTATATATATGTTTATGTGTGTATGGGCTGGCATCCTAGGCGTGTAAACTTCCTA 1858 *************************** * * ****** * * consensus_13045#0 TGATGCTCCTTTGCAAAATTTGTAATTCACGGCTATTCACCAGAATGTAGTATGCTCTGG 1717 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 TGACAAAAAAAGG----------------------------------------------- 1871 consensus_13045#0 AAACTAGTGTGTCCATGCTTTGCACAATCAGGCTCATATAATTGGGGATTGGTTGGGGTA 1777 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 ------------------------------------------------------------ consensus_13045#0 TATTGAGGATAGAACACACTGGGAAGAGGATGGATGCGCTTTTGATGTAGAGATGGTGCA 1837 consensus_13045#2 ------------------------------------------------------------ consensus_13045#1 ------------------------------------------------------------ consensus_13045#0 GTCAAAATTTGATACCAATAATATGAAGGGTATCTAAAAAAAAAAAAAAAAGA 1890 consensus_13045#2 ----------------------------------------------------- consensus_13045#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||