These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1967 fasta sequence [GTACTACACTGCACTGCATCGCGCAACCAACCAACCACCCACCACAACACAACCCTCCTCTCCTCATCATCACTCGCTCGCTCGCTCTCGCGCTTTGCGGCAACTGGCG-GTGTCTCCTAGCCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGCCGCGTACGACGCGGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACGCCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATCCCGGCGC-TGGTGCCGCTGCTGCGGAGCACCGACCCGGTGGCGCAGGAGAGCGCGGTGACGGCGCTGCTCAACCTCTCGCTCGAGGAGCGGAACCGGTCGGCCATCACGGCGGCGGGGGCCATCAAGCCGCTCGTGTACGCGCTGCGGACGGGCACCGCGTCGGCCAAGCAGAACGCCGCGTGCGCGCTGCTCAGCCTCTCGGGCATCGAGGAGAACCGCGCCACCATCGGCGCGTGCGGCGCCATCCCT-CCCCTCGTCGCGCTGCTCTCCGCGGGCTCCA-CCCGCGGCAAGAAGGACGCGCTCACCACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCGCCGTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATGGTGGTCCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCG-CTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGACGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTCTGGTTTGGAGTCCGAATTCCCCTGTTCCAATTTATCTAGTGTGACTTATTTTGCAAATATTTCA] [+] EMBL AK058404 [GTACTACACTGCACTGCATCGCGCAACCAACCAACCACCCACCACAACACAACCCTCCTCTCCTCATCATCACTCGCTCGCTCGCTCTCGCGCTTTGCGGCAACTGGCG GTGTCTCCTAGCCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGCCGCGTACGACGCGGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACGCCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATCCCGGCGC TGGTGCCGCTGCTGCGGAGCACCGACCCGGTGGCGCAGGAGAGCGCGGTGACGGCGCTGCTCAACCTCTCGCTCGAGGAGCGGAACCGGTCGGCCATCACGGCGGCGGGGGCCATCAAGCCGCTCGTGTACGCGCTGCGGACGGGCACCGCGTCGGCCAAGCAGAACGCCGCGTGCGCGCTGCTCAGCCTCTCGGGCATCGAGGAGAACCGCGCCACCATCGGCGCGTGCGGCGCCATCCCT CCCCTCGTCGCGCTACTCTCCGCGGGCTCCA CCCGCGGCAAGAAGGACGCGCTCACCACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCGCCGTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATGGTGGTTCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCG CTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGG ] [+] EMBL AK059561 [ CTACACTGCACTGCATCGCGCAACCAACCAACCACCCACCACAACACAACCCTCCTCTCCTCATCATCACTCGCTCGCTCGCTCTCGCGCTTTGCGGCAACTGGCG GTGTCTCCTAGCCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCAGCCGCGTACGACGCGGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACGCCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATCCCGGCGC TGGTGCCGCTGCTGCGGAGCACCGACCCGGTGGCGCAGGAGAGCGCGGTGACGGCGCTGCTCAACCTCTCGCTCGAGGAGCGGAACCGGTCGGCCATCACGGCGGCGGGGGCCATCAAGCCGCTCGTGTACGCGCTGCGGACGGGCACCGCGTCGGCCAAGCAGAACGCCGCGTGCGCGCTGCTCAGCCTCTCGGGCATCGAGGAGAACCGCGCCACCATCGGCGCGTGCGGCGCCATCCCT CCCCTCGTCGCGCTGCTCTCCGCGGGCTCCA CCCGCGGCAAGAAGGACGCGCTCACCACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCGCCGTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATGGTGGTCCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCCGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCG CTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGACGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTCTGGTTTGGAGTCCGAATTCCCCTGTTCCAATTTATCTAGTGTGACTTATTTTGCAAATATTTCA] [+] EMBL CB671919 [ CAACTCCTT GAGTCTCCTAGCCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCTCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGTCGCGTACGACGCAGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACGCCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCTAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATC ] [+] EMBL CB671917 [ CAACT GCGTGTGTCTCCTAGCCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGCCGCGTACGACGCGGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACGCCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATCCCGGCGC TGGTGCCGCTGCTGCGGAGCACCGACCCGGTGGCGCAGGAGAGCGCGGTGACGGCGCTGCTCA ] [+] EMBL BI799871 [ GGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCC ] [+] EMBL CB641875 [ GCTGCCGTAACCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGCCGCGTACGACGCGGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACTCCCAGATCCGACGCGCCGCAGGAGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGACGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCCCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCCGCGCCATCCCGGAGC TGGTGCCGCTGCTGCGGACCACCG ] [+] EMBL CA755995 [ GACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGC ] [+] EMBL C74400 [ anntnantnCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACNCCCAGATCCGACGCGCCGCA GTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGNC ANCCG GGCGGCGAGGATAANGCTGCTGGCGAA NACAGGTCGGACATCCGCGAGCTGATCGGCGTNTCCGGCGCCATNCCGGCGCTTGGTNCCGCTGCTG GGA CACCGACCCG ] [-] EMBL BU672829 [ GGAGAACCGCGCCACCATCGGCGCGTGCGGCCCCATCCGTCCCCCTCGTCGCGCTGCTCTCCGCGGGCTCCACCCCCCGGCAAGAAGGACGCGCTCACCACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCGCCGTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATGGTGGTCCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCTCCGTGGTGGCCCTGCTGCAGCTTTGCTTCGAGTGCCCCCGCCACCGGGGGCCTTCTGGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAA ] [-] EMBL CB671918 [ GGCAGCGGGACGTCGGAGAAGGCAATGGTGGTCCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCG CTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGACGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTCTGGTTTGGAGTCCGAATTCCCCTGTTCCAATTTAaaaaaaaga ] consensusID : consensus_13052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [AATGGTGGTCCTCTCCAGCCTCGCGGGCATGGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCGCTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTAGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGCCGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTATGGTTTGGAGTCCGAATTCCCCTGTTCCAATTAAAAAAAAGA] [-] EMBL CB671920 [AATGGTGGTCCTCTCCAGCCTCGCGGGCATGGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCGCTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTAGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGCCGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTATGGTTTGGAGTCCGAATTCCCCTGTTCCAATTAAAAAAAAGA] consensusID : consensus_13052#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [GGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTTTGCTCCGAGTGCCCCCGCAACCGCGCGCTTTTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTTGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGAAAAAAAAAAAAAAAAAAAAAAACTC] [-] EMBL CF326652 [GGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTTTGCTCCGAGTGCCCCCGCAACCGCGCGCTTTTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTTGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGAAAAAAAAAAAAAAAAAAAAAAACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13052#0 GTACTACACTGCACTGCATCGCGCAACCAACCAACCACCCACCACAACACAACCCTCCTC 60 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 TCCTCATCATCACTCGCTCGCTCGCTCTCGCGCTTTGCGGCAACTGGCGGTGTCTCCTAG 120 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 CCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCG 180 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 TGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCG 240 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 GCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGCCGCGTACGACGCG 300 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 GCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGC 360 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 GAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCC 420 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 AACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTC 480 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 AACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACG 540 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 CCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGAT 600 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 CTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGG 660 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 GCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTG 720 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 CTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATCCCGGCG 780 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 CTGGTGCCGCTGCTGCGGAGCACCGACCCGGTGGCGCAGGAGAGCGCGGTGACGGCGCTG 840 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 CTCAACCTCTCGCTCGAGGAGCGGAACCGGTCGGCCATCACGGCGGCGGGGGCCATCAAG 900 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 CCGCTCGTGTACGCGCTGCGGACGGGCACCGCGTCGGCCAAGCAGAACGCCGCGTGCGCG 960 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 CTGCTCAGCCTCTCGGGCATCGAGGAGAACCGCGCCACCATCGGCGCGTGCGGCGCCATC 1020 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 CCTCCCCTCGTCGCGCTGCTCTCCGCGGGCTCCACCCGCGGCAAGAAGGACGCGCTCACC 1080 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 ACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCGCC 1140 consensus_13052#1 ------------------------------------------------------------ consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 GTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATG 1200 consensus_13052#1 --------------------------------------------------------AATG 4 consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 GTGGTCCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGC 1260 consensus_13052#1 GTGGTCCTCTCCAGCCTCGCGGGCATGGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGC 64 consensus_13052#2 -----------------------------------------------------GGCTGGC 7 ******* consensus_13052#0 GGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCC 1320 consensus_13052#1 GGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCC 124 consensus_13052#2 GGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCC 67 ************************************************************ consensus_13052#0 GTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCGCTTCTTGTCCGT 1380 consensus_13052#1 GTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCGCTTCTTGTCCGT 184 consensus_13052#2 GTGGTGGCGCTGCTGCAGCTTTGCTCCGAGTGCCCCCGCAACCGCGCGCTTTTTGTCCGT 127 ******************** ****************************** ******** consensus_13052#0 GAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCAC 1440 consensus_13052#1 GAGGGCGCCATCCCACCGCTTGTCGCGCTCTAGCAGTCCGGCTCTGCCCGTGCCAAGCAC 244 consensus_13052#2 GAGGGCGCCATCCCACCGCTTGTCGCGCTCTTGCAGTCCGGCTCTGCCCGTGCCAAGCAC 187 ******************************* **************************** consensus_13052#0 AAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGG 1500 consensus_13052#1 AAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGG 304 consensus_13052#2 AAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGG 247 ************************************************************ consensus_13052#0 GTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTA 1560 consensus_13052#1 GTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTA 364 consensus_13052#2 GTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTA 307 ************************************************************ consensus_13052#0 TGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAG 1620 consensus_13052#1 TGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAG 424 consensus_13052#2 TGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAG 367 ************************************************************ consensus_13052#0 GAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAAT 1680 consensus_13052#1 GAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAAT 484 consensus_13052#2 GAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAAT 427 ************************************************************ consensus_13052#0 ACAAATGTGGTTTGCGAGTGACGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGA 1740 consensus_13052#1 ACAAATGTGGTTTGCGAGTGCCGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGA 544 consensus_13052#2 ACAAATGTGGTTTGCGAGTGAAAAAAAAAAAAAAAAAAAAA--AACTC------------ 473 ******************** * * * ** *** consensus_13052#0 GGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTG 1800 consensus_13052#1 GGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTG 604 consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 ACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGG 1860 consensus_13052#1 ACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGG 664 consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 TTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTCTGGTTTGGAGTCCGAAT 1920 consensus_13052#1 TTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTATGGTTTGGAGTCCGAAT 724 consensus_13052#2 ------------------------------------------------------------ consensus_13052#0 TCCCCTGTTCCAATTTATCTAGTGTGACTTATTTTGCAAATATTTCA 1967 consensus_13052#1 TCCCCTGTTCCAATTAAAAAAAAGA---------------------- 749 consensus_13052#2 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||