These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 571 fasta sequence [AACGATACGCTACGTAACGGCATGACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT-CCGGAGGTTTTTTT-AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGCGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAAAGGTTCTTGATGTACCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGTTGCTCCTGAAAACGGAAGGTGTCCACAATGT] [+] EMBL CF276152 [AACGATACGCTACGTAACGGCATGACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCGTCCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTTAAAAAGGACTTTTTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACTTTTTACCATATCGAGTCAACTTATTTCCATAGACTAAACCAAAAATACGGCGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCC ] [+] EMBL CF276688 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATA TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCTTTTCGAGTCAACTGACAACCTTAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCACCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAAAGGTTCTTGATGTACCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGG ] [+] EMBL CF321530 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTT T TT TTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCAGCCCATGAAAAAATTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATTATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAAAGGT ] [+] EMBL CF313198 [ TTTTTTTTTTTTTTTTTTTTTTT TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCATCTGACAACCATAAACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCAACCAAAAGGAACCGTTCAGCACTTGACCTCCTTCACCCCATGAAAAAATTAAAGGAAGGTTGGGTCGGTGGCTCCCTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTTTCACCAACAAAAAACTGAAGGTCCTTGACCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCACCTTGGCGGAAAGGTTCTTGATGTACCGCTTCATAAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGTTGCTCCTGAAAACGGAAGGTGTCCACAATGT] [+] EMBL CF292177 [ TTTTTTTTTTTTTTTTTTTTTT T TT TTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGTTCAACACTTGACCTCCTTCAGCCCATGAAAAAATTAAAGGAAGGTTGGGTCGGGGGCTCCCTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATAATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAAAGG ] [+] EMBL CF277729 [ TTTTTTTTTTTTTTTTTTTTTT TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATCCGGCGGACTGCATAAATAAAACATCAGTGTCAACCAAAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAAAAAATTAAAGGAA ] [+] EMBL CF313271 [ TTTTTTTTTTTTTTTTTAATA TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGG ] [+] EMBL CF321642 [ TTTTTTTTTTTTTTTTTTTT TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGCGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAGAGGTTCTTGATGTACCGCTTCATGAAGGTCACAGACTGCTTCTTGTCAAAAGGAGGTTG ] [+] EMBL CF280102 [ ttAATCCAATAATCCCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATTCTGTTGACTGCATAAATAAAACATTATTGTCGAGCAAAAGGAACCGTTCAACACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCA ] consensusID : consensus_13056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 445 fasta sequence [TAGTCTCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCAT] [+] EMBL CF324622 [TAGTCTCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGC ] [-] EMBL AU094048 [ TTTTTTTTTTTTTTTTTTTTTTTTTT TTTCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCANATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGANCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCC ] [+] EMBL CF279610 [ TTTTTTTTTTTTTTTTTTTTTTTTTAATATCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTATACCATATCGAGTCAACTGACAACCTTAGACTAGACCAAAAATACGGCGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13056#0 AACGATACGCTACGTAACGGCATGACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_13056#1 --------------------------TAGTCTCAAGTTTTTTTTTTTTTTTTTTTTTTTT 34 * ** * ************************ consensus_13056#0 TTT--TTTCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTA 118 consensus_13056#1 TTTAATATCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTA 94 *** * ***************************************************** consensus_13056#0 AAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTA 178 consensus_13056#1 AAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTA 154 *********** ************************************************ consensus_13056#0 AACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGCGGACTGCATAAA 238 consensus_13056#1 GACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGA 214 ******************************** ************************ * consensus_13056#0 TAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCAGCCCATGAA 298 consensus_13056#1 TAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAG 274 ******************** ************* ************************ consensus_13056#0 AAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGC 358 consensus_13056#1 AGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGC 334 * ********************** *********************************** consensus_13056#0 CATCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGT 418 consensus_13056#1 CATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGT 394 **************************** ******************************* consensus_13056#0 ACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGG 478 consensus_13056#1 ACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCAT--------- 445 ****** ******************************************** consensus_13056#0 CGGAAAGGTTCTTGATGTACCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAG 538 consensus_13056#1 ------------------------------------------------------------ consensus_13056#0 GTTGCTCCTGAAAACGGAAGGTGTCCACAATGT 571 consensus_13056#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||