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Oryza sativa
cluster # 13067 cluster # 13067       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13067#0 length = 700 sequences # 7  
consensus_13067#1 length = 583 sequences # 1  
consensus_13067#2 length = 497 sequences # 1  
consensus_13067#3 length = 492 sequences # 3  

consensusID : consensus_13067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 700
fasta sequence
                              [GAACTGCAGATCGAGTCGCATCGCGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACCCGGACGCGGCGGCGCACGGCGGCAGCCGGAG-AAGAGCGGGGCGTGGCGGCAGGCAGCAGCTCGCGGGCGTCTCCTCCAGTCTTGCTAACCTCGCCGCATGGGGATCGGCCACGTGCTCGGCGTCCTCGGCGGCGCCCTCCTCGCCCACGCCGCCTACGCCACCATCCAGTATCGCGCCGTGCTGAAGATCACGGA-GGAGGAGTTC-TCGAGTCCGCCTATGGA-TG-TGATGA-TGCAATTGCTCCTGGGGTTGGCC-TTATGCATGTGGGCAGGTCTTGC-TGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGCTAACCTGGACTTCATGATCTTCAACCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTGTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCAATCTTGTGCCAGTCCATGTGAATTACCAGTTATTCAAAAAA]

[+] EMBL AK101409             [GAACTGCAGATCGAGTCGCATCGCGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACCCGGACGCGGCGGCGCACGGCGGCAGCCGGAG AAGAGCGGGGCGTGGCGGCAGGCAGCAGCTCGCGGGCGTCTCCTCCAGTCTTGCTAACCTCGCCGCATGGGGATCGGCCACGTGCTCGGCGTCCTCGGCGGCGCCCTCCTCGCCCACGCCGCCTACGCCACCATCCAGTATCGCGCCGTGCTGAAGATCACGGA GGAGGAGTTC TCGAGTCCGCCTATGGA TG TGATGA TGCAATTGCTCCTGGGGTTGGCC TTATGCATGTGGGCAGGTCTTGC TGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGCTAACCTGGACTTCATGATCTTCAACCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTGTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCAATCTTGTGCCAGTCCATGTGAATTACCAG            ]
[+] EMBL AK059104             [GAACTGCAGATCGAGTCGCATCGCGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACCCGGACGCGGCGGCGCACGGCGGCAGCCGGAG AAGAGCGGGGCGTGGCGGCAGGCAGCAGCTCGCGGGCGTCTCCTCCAGTCTTGCTAACCTCGCCGCATGGGGATCGGCCACGTGCTCGGCGTCCTCGGCGGCGCCCTCCTCGCCCACGCCGCCTACGCCACCATCCAGTATCGCGCCGTGCTGAAGATCACGGA GGAGGAGTTC TCGAGTCCGCCTATGGA TG TGATGA TGCAATTGCTCCTGGGGTTGGCC TTATGCATGTGGGCAGGTCTTGC TGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGCTAACCTGGACTTCATGATCTTCAACCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTGTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCA                                         ]
[+] EMBL AU031314             [            GAGTCGCATCGCGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACCCGGACGCGGCGGCGCACGGCGGCAG  NGAGNAAGAGCGGGGCGTGGCGGCAGGCAGCAGCTCGCGGGCGTCTCCTCCAGTCTTGCTAACCTCGCCGCATGGGGATCGGCCACGTGCTCGGCGTCCTCGGCGGCGCCCTCCTCGCCCACNCCGCCTACNCCACCATCCAGTATCGCGCCGTGCTGAAGATCACGGAGGGAGGAGTTCTTCGAGTCCGCCTATGGATTGTTGATGATTGCNATTGCTCCTGGGGTTNGCCTTTATGCA                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA756670             [              GTCGCATCGCGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACCCGGACGCGGCGGCGCACGGCGGCAGCCGGAG AAGAGCGGGGCGTGGCGGCAGGCAGCAGCTCGCGGGCGTCTCCTCCAGTCTTGCTAACCTCGCCGCATGGGGATCGGCCACGTGCTCGGCGTCCTCGGCGGCGCCCTCCTCGCCCACGCCGCCTACGCCACCATCCAGTATCGCGCCGTGCTGAAGATCACGGA GGAGGAGTTC TCGAGTCCGCCTATGGA TG TGATGA TGCAATTGCTCCTGGGGTTGGCC TTATGCATGTGGGCAGGTCTTGC TGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGCTAACCTGGACTTCATGATCTTCAACCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTGTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAGGTTTTTG                                                                          ]
[+] EMBL OS1457A              [                                                                                gggnCGGCGCACGGCGGCAGCCGGAG AAGAGCGGGGCGTGGCGGCAGGCAGCAGCTCGCGGGCGTCTCCTCCAGTCTTGCTAACCTCGCCGCATGGGGATCGGCCACGTGCTCGGCGTCCTCGGCGGCGCCCTCCTCGCCCACGCCGCCTACGCCACCATCCAGTATCGCGCCGTGCTGAAGATCACGGA GGAGGAGTTC TCGAGTCCGCCTATGGA TG TAATGA TGCAATTGCTCCTGGGGTTGGCC TTATGCATGTGGGCAGGTCTTGCTTGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGA                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSC13491             [                                                                                                                        GGCGGCAGGCAGCAGCTCGCGGGCGTCTCCTCCAGTCTTGCTAACCTCGCCGCATGGGGATCGGCCACGTGCTCGGCGTCCTCGGCGGCGCCCTCCTCGCCCACGCCGCCTACGCCACCATCCAGTATCGCGCCGTGCTGAAGATCACGGA GGAGGAGTTC TCGAGTCCGCCTATGGA TG TGATGA TGCAATTGCTCCTGGGGTTGGCC TTATGCATGTGGGCAGGTCTNGC TGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGCTAACCTGGACTTCATGATCTTCANCCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACA                                                                                                                                                                                                  ]
[+] EMBL AU031315             [                                                                                                                                                            CTTGCTAACCTCGCCGCATGGGNATCGGCCACGTGCTCGGCNTCTTCGGCGGCGCCNTCTTCGCCCACGCCGCCTACGCCACCATCCAGTATCGCGCCGTGCTGAAGATCACGGA GGAGGNGTTC TCGAGTCCGCCTATGGA TG TGATGA TGCAATTGCNCCTGGGGTTGGCC TTATGCATGTGGGCAGGTCTTGC TGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGCTAACCTGGACTTCATGATCTTCAACCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTGTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCAATCTTGTGCCAGTCCATGTGAATTACCNGTTATTCAAAAAA]


>consensus_13067#0 GAACTGCAGATCGAGTCGCATCGCGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAAGACCCGGACGCGGCGGCGCACGGCGGCAGCCGGAGAAGAGCGGGGCGTG GCGGCAGGCAGCAGCTCGCGGGCGTCTCCTCCAGTCTTGCTAACCTCGCCGCATGGGGAT CGGCCACGTGCTCGGCGTCCTCGGCGGCGCCCTCCTCGCCCACGCCGCCTACGCCACCAT CCAGTATCGCGCCGTGCTGAAGATCACGGAGGAGGAGTTCTCGAGTCCGCCTATGGATGT GATGATGCAATTGCTCCTGGGGTTGGCCTTATGCATGTGGGCAGGTCTTGCTGTTCCAGC GAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGCTAA CCTGGACTTCATGATCTTCAACCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAA GCTGAAGACATGATTGAACATTTACAGTTTCTGTTATTTACCACAGTAGGATGATCCATC CAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACG TCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCAA TCTTGTGCCAGTCCATGTGAATTACCAGTTATTCAAAAAA



consensusID : consensus_13067#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence
                              [ACGAGGCTCGAGTTTTTTTTTTTTTTTTTTTTAACTCAATATCCAAAATATCCATTGATGATCATCTGGCAAAATTGTAAAAAAAAAGTCCAGGACTGGGAGTACAAATCTGGTATACCAACAAATCTATGTACAGTGGACAAACAATCCGAACTCCGAAAAAATCGGTCCCCTCGGCCTCGTGAACGAACGGTCTAGGAACCTTCCGCTGTCCATTCTGTCAGATTCAGAAGGAAGCGGATCGGGTCGAAGCGAAGACCCGCCTCGTCTTCTCGAGATCCGTCCCGCTCGGCAGCCTCCCCATCGCCGGTGCGCTGCCCTTCGCCGCCACAGACGGGGCGTCCCCGGCTATATCGATCCTCACCTCCGGCTGCGCGCCGTCGGCGTCGTACGGCGCCTCGACGTCGGCGCGGCAGAGCGGGCACGTGGAGTTCTCCCGGAACCACGCGTCGATGCACTCCACGTGGAACCGGTGCCCGCACCGCGGCAGCGCGCGGGCCTTGTCGCCGGCCTCGAACTCGGCGAGGCAGACCGCGCAGTCCCCGGGCGCAGCGCCCGCGGCGGCGACGACGACGACGGGGAG]

[+] EMBL CF326773             [ACGAGGCTCGAGTTTTTTTTTTTTTTTTTTTTAACTCAATATCCAAAATATCCATTGATGATCATCTGGCAAAATTGTAAAAAAAAAGTCCAGGACTGGGAGTACAAATCTGGTATACCAACAAATCTATGTACAGTGGACAAACAATCCGAACTCCGAAAAAATCGGTCCCCTCGGCCTCGTGAACGAACGGTCTAGGAACCTTCCGCTGTCCATTCTGTCAGATTCAGAAGGAAGCGGATCGGGTCGAAGCGAAGACCCGCCTCGTCTTCTCGAGATCCGTCCCGCTCGGCAGCCTCCCCATCGCCGGTGCGCTGCCCTTCGCCGCCACAGACGGGGCGTCCCCGGCTATATCGATCCTCACCTCCGGCTGCGCGCCGTCGGCGTCGTACGGCGCCTCGACGTCGGCGCGGCAGAGCGGGCACGTGGAGTTCTCCCGGAACCACGCGTCGATGCACTCCACGTGGAACCGGTGCCCGCACCGCGGCAGCGCGCGGGCCTTGTCGCCGGCCTCGAACTCGGCGAGGCAGACCGCGCAGTCCCCGGGCGCAGCGCCCGCGGCGGCGACGACGACGACGGGGAG]


>consensus_13067#1 ACGAGGCTCGAGTTTTTTTTTTTTTTTTTTTTAACTCAATATCCAAAATATCCATTGATG ATCATCTGGCAAAATTGTAAAAAAAAAGTCCAGGACTGGGAGTACAAATCTGGTATACCA ACAAATCTATGTACAGTGGACAAACAATCCGAACTCCGAAAAAATCGGTCCCCTCGGCCT CGTGAACGAACGGTCTAGGAACCTTCCGCTGTCCATTCTGTCAGATTCAGAAGGAAGCGG ATCGGGTCGAAGCGAAGACCCGCCTCGTCTTCTCGAGATCCGTCCCGCTCGGCAGCCTCC CCATCGCCGGTGCGCTGCCCTTCGCCGCCACAGACGGGGCGTCCCCGGCTATATCGATCC TCACCTCCGGCTGCGCGCCGTCGGCGTCGTACGGCGCCTCGACGTCGGCGCGGCAGAGCG GGCACGTGGAGTTCTCCCGGAACCACGCGTCGATGCACTCCACGTGGAACCGGTGCCCGC ACCGCGGCAGCGCGCGGGCCTTGTCGCCGGCCTCGAACTCGGCGAGGCAGACCGCGCAGT CCCCGGGCGCAGCGCCCGCGGCGGCGACGACGACGACGGGGAG



consensusID : consensus_13067#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence
                              [GAGCAATCCTCGCCNACGCCCGCCCTACGCCACCATCCCAGTAATCGCGCCGTGNTGAAAGATCACGGAGGAGGAGTTCTCGAGTCCGCCTATGGATGTGATGATGCCAATTGCTCCTGGGGTTGGCCTTATGCATGTGGGCAGGTCTTGCTGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGCTAACCTGGACTTCATGATCTTCAACCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTNTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCAATCTTGTGCCAGTCCATGTGAAAAAAAAAAAAAAAAAA]

[+] EMBL C98262               [GAGCAATCCTCGCCNACGCCCGCCCTACGCCACCATCCCAGTAATCGCGCCGTGNTGAAAGATCACGGAGGAGGAGTTCTCGAGTCCGCCTATGGATGTGATGATGCCAATTGCTCCTGGGGTTGGCCTTATGCATGTGGGCAGGTCTTGCTGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGCTAACCTGGACTTCATGATCTTCAACCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTNTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCAATCTTGTGCCAGTCCATGTGAAAAAAAAAAAAAAAAAA]


>consensus_13067#2 GAGCAATCCTCGCCNACGCCCGCCCTACGCCACCATCCCAGTAATCGCGCCGTGNTGAAA GATCACGGAGGAGGAGTTCTCGAGTCCGCCTATGGATGTGATGATGCCAATTGCTCCTGG GGTTGGCCTTATGCATGTGGGCAGGTCTTGCTGTTCCAGCGAAGTTCCTTTCAGTGCTCC CTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGCTAACCTGGACTTCATGATCTTCA ACCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACA TTTACAGTTTCTNTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCA CTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAG TTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCAATCTTGTGCCAGTCCATGTGA AAAAAAAAAAAAAAAAA



consensusID : consensus_13067#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 492
fasta sequence
                              [GATGATCATCTGGCAAAATTGTAAAAAAAGTCCACGACTGGGAGTACAAATCTGGTATACCAACAAATCTATGTACAGTGGACAAACAATCCGAACTCCGAAAAAATCGGTCCCCTCGGCCTCGTGAACGAACGGTCTAGGAACCTTCCGCTGTCCATTCTGTCAGATTCAGAAGGAAGCGGATCGGGTCGAAGCGAAGACCCGCCTCGTCTTCTCGAGATCCGTCCCGCCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTGTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCAATCTTGTGCCAGTCCATGTGAATTACCAGTTATTCATTCACTAAAAAAAA]

[+] EMBL CA999989             [GATGATCATCTGGCAAAATTGTAAAAAAAGTCCACGACTGGGAGTACAAATCTGGTATACCAACAAATCTATGTACAGTGGACAAACAATCCGAACTCCGAAAAAATCGGTCCCCTCGGCCTCGTGAACGAACGGTCTAGGAACCTTCCGCTGTCCATTCTGTCAGATTCAGAAGGAAGCGGATCGGGTCGAAGCGAAGACCCGCCTCGTCTTCTCGAGATCCGTCCCGCCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTGTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATG                                                                                                    ]
[+] EMBL CB000284             [ ATGATCATCTGGCAAAATTGTAAAAAAAGTCCCTTACTGGGAGTACAAATCTGGTATACCAACAAATCTATGTACAGTGGACAAACAATCCGAACTCCGAAAAAATCGGTCCCCTCGGCCTCGTGAACGAACGGTCTAGGAACCTTCCGCTGTCCATTCTGTCAGATTCAGAAGGAAGCGGATCGGGTCGAAGCGAAGACCCGCCTCGTCTTCTCGAGATCCGTCCCGCCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTGTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCAATCTTGTGCCAGTCCATGTGAATTACCAGTTATTCATTCACTAAAAAAAA]
[+] EMBL CA998747             [        TCTGGCAAAATTGTAAAAAAAGTCCAGGATTGTTAGCACAAATCTGGTATACCAACAAATCTATGTACAGTGGACAAACAATCCGAACTCCGAAAAAATCGGTCCCCTCGGCCTCGTGAACGAACGGTCTAGGAACCTTCCGCTGTCCATTCTGTCAGATTCAGAAGGAAGCGGATCGGGTCGAAGCGAAGACCCGCCTCGTCTTCTCGAGATCCGTCCCGCCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTGTTATTTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAGAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATACCACTCAATCTTGTGCCAGTCCATGTGAATTACCAGTTATTCATTCACTAAAAAAAA]


>consensus_13067#3 GATGATCATCTGGCAAAATTGTAAAAAAAGTCCACGACTGGGAGTACAAATCTGGTATAC CAACAAATCTATGTACAGTGGACAAACAATCCGAACTCCGAAAAAATCGGTCCCCTCGGC CTCGTGAACGAACGGTCTAGGAACCTTCCGCTGTCCATTCTGTCAGATTCAGAAGGAAGC GGATCGGGTCGAAGCGAAGACCCGCCTCGTCTTCTCGAGATCCGTCCCGCCGGAAGGGCG CTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGAACATTTACAGTTTCTGTTAT TTACCACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGA GAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAA TTCTATATCTGTATACCACTCAATCTTGTGCCAGTCCATGTGAATTACCAGTTATTCATT CACTAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13067#0      GAACTGCAGATCGAGTCGCATCGCGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 60
consensus_13067#2      ------------------------------------------------------------
consensus_13067#3      ------------------------------------------------------------
consensus_13067#1      ------------------------------------------------------------
                                                                                   

consensus_13067#0      GAGAGAGAGAAGACCCGGACGCGGCGGCGCACGGCGGCAGCCGGAGAAGAGCGGGGCGTG 120
consensus_13067#2      ------------------------------------------------------------
consensus_13067#3      ------------------------------------------------------------
consensus_13067#1      ------------------------------------------------------------
                                                                                   

consensus_13067#0      GCGGCAGGCAGCAGCTCGCGGGCGTCTCCTCCAGTCTTGCTAACCTCGCCGCATGGGGAT 180
consensus_13067#2      ------------------------------------------------------------
consensus_13067#3      ------------------------------------------------------------
consensus_13067#1      -----------------------------------------------ACGAGGCTCGAGT 13
                                                                                   

consensus_13067#0      CGGCCACGTGCTCGGCGTCCTCGGCGGCGCCCTCCTCGCCCACGCCG--CCTACGCCACC 238
consensus_13067#2      --------------------------GAGCAATCCTCGCCNACGCCCGCCCTACGCCACC 34
consensus_13067#3      -------------------------------------------GATGATCATCTGGCAAA 17
consensus_13067#1      TTTTTTTTTTTTTTTTTTTAACTCAATATCCAAAATATCCATTGATGATCATCTGGCAAA 73
                                                                  *     * *  * **  

consensus_13067#0      ATCC-AGTA---TCGCGCCGTGCTGAA-GATCACGGAGGAGGAGTTCTCGAGTCCGCCTA 293
consensus_13067#2      ATCCCAGTAA--TCGCGCCGTGNTGAAAGATCACGGAGGAGGAGTTCTCGAGTCCGCCTA 92
consensus_13067#3      ATTGTAAAAA--AAGTCCACGACTGGGAGTACAAATCTGGTATACCAACAAATCTATGTA 75
consensus_13067#1      ATTGTAAAAAAAAAGTCCAGGACTGGGAGTACAAATCTGGTATACCAACAAATCTATGTA 133
                       **   *  *     *  *     **   *  **     *         * * **    **

consensus_13067#0      TGGATGT--GATGATGC-AATTGCTCCTGGGGTTGGCCTTATGCATGTGGGCAGGTCTTG 350
consensus_13067#2      TGGATGT--GATGATGCCAATTGCTCCTGGGGTTGGCCTTATGCATGTGGGCAGGTCTTG 150
consensus_13067#3      CAGTGGACAAACAATCCGAACT-CCGAAAAAATCGGTCCCCTCGGCCT---CGTGAACGA 131
consensus_13067#1      CAGTGGACAAACAATCCGAACT-CCGAAAAAATCGGTCCCCTCGGCCT---CGTGAACGA 189
                         *  *    *  ** * ** * *        * ** *   *     *   *  *     

consensus_13067#0      CTGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATA-GGATTGTTTCA 409
consensus_13067#2      CTGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATA-GGATTGTTTCA 209
consensus_13067#3      ACGGTCTAGGAACCTTCCGCTGTCCATTCTGTCAGATTCAGAAGGAAGCGGATCGGGTCG 191
consensus_13067#1      ACGGTCTAGGAACCTTCCGCTGTCCATTCTGTCAGATTCAGAAGGAAGCGGATCGGGTCG 249
                         * ** **  *  ****  *      **  ***   * ** ** *   **** *  ** 

consensus_13067#0      CTCCC--GGCTAACCTGGACTTCATGATCTTCAACCACCGCGGAAGGG-CGCTACCTTCA 466
consensus_13067#2      CTCCC--GGCTAACCTGGACTTCATGATCTTCAACCACCGCGGAAGGG-CGCTACCTTCA 266
consensus_13067#3      AAGCGAAGACCCGCCTCGTCTTCTCGAGATCCGTCCCGC-CGGAAGGG-CGCTACCTTCA 249
consensus_13067#1      AAGCGAAGACCCGCCTCGTCTTCTCGAGATCCGTCCCGCTCGGCAGCCTCCCCATCGCCG 309
                          *   * *   *** * ****  **  * *  **  * *** **   * * * *  * 

consensus_13067#0      G-ACCCAGACTT--GAAGCTGAAGACATGAT-TGAACATTTACAGTTTCTGTTATTTACC 522
consensus_13067#2      G-ACCCAGACTT--GAAGCTGAAGACATGAT-TGAACATTTACAGTTTCTNTTATTTACC 322
consensus_13067#3      G-ACCCAGACTT--GAAGCTGAAGACATGAT-TGAACATTTACAGTTTCTGTTATTTACC 305
consensus_13067#1      GTGCGCTGCCCTTCGCCGCCACAGACGGGGCGTCCCCGGCTATATCGATCCTCACCTCCG 369
                       *  * * * * *  *  **   ****  *   *   *   ** *       * *  * * 

consensus_13067#0      ACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAG---A 579
consensus_13067#2      ACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAG---A 379
consensus_13067#3      ACAGTAGGATGATCCATCCAGTTATTTTTTTTGTGTCACTCATTGTTGAGGGGGAG---A 362
consensus_13067#1      GCTGCGCGCCGTCGGCGTCGTACGGCGCCTCGACGTCGG-CGCGGCAGAGCGGGCACGTG 428
                        * *   *  *       *          *    ***   *   *  *** ***      

consensus_13067#0      AACATTTCCAAGAACTTAACGTC----TACTATGTGTAACTCAAGTTTTTGTGTCACCTG 635
consensus_13067#2      AACATTTCCAAGAACTTAACGTC----TACTATGTGTAACTCAAGTTTTTGTGTCACCTG 435
consensus_13067#3      AACATTTCCAAGAACTTAACGTC----TACTATGTGTAACTCAAGTTTTTGTGTCACCTG 418
consensus_13067#1      GAGTTCTCCCGGAACCACGCGTCGATGCACTCCACGTGGAACCGGTGCCCGCACCGCGGC 488
                        *  * ***  ****    ****     ***    **    *  **    *   * *   

consensus_13067#0      AATTCTATATCTGTAT-ACCA--CTCAATCTTGT---GCCAGTCCATGTGAATTACCAGT 689
consensus_13067#2      AATTCTATATCTGTAT-ACCA--CTCAATCTTGT---GCCAGTCCATGTGAAAAAAAAAA 489
consensus_13067#3      AATTCTATATCTGTAT-ACCA--CTCAATCTTGT---GCCAGTCCATGTGAATTACCAGT 472
consensus_13067#1      AGCGCGCGGGCCTTGTCGCCGGCCTCGAACTCGGCGAGGCAGACCGCGCAGTCCCCGGGC 548
                       *   *     *  * *  **   *** * ** *    * *** **  *            

consensus_13067#0      TATTC-------AAAAAA----------------- 700
consensus_13067#2      AA----------AAAAAA----------------- 497
consensus_13067#3      TATTCATTCACTAAAAAAAA--------------- 492
consensus_13067#1      GCAGCGCCCGCGGCGGCGACGACGACGACGGGGAG 583
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)