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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 997 fasta sequence
[GTCCGCATCCGGGTCAAATCAAATCGAGAGAGAGCCCCATCTCGCCTCGCCTCCTCCTCCCTCCTCCCCATTCCCCCGCCGCCGCCGCCGAGGGCGCCGCGACCTGAGAGCACACGCACGCCCGCCATGTGGCGCCGCCTCCAAACCCTGGCCCCGGCCCTGCGCCGCGCCGCCTCCGCCTCCGCCTCCGCGGCGGCATCGGGCGCCGCGGGCCCCGCCTCCCTCGCCCGCGCCGCGCCGCTCTCCACGGCGGCCGCCGCCGCCTTCCGCCGCACCAGCCCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA-CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT-CCTTAGGGATTTTGTCCAAACAAAAAACTCAT-CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAAGCAGCCACTAAATCTTTAAAAAA]
[+] EMBL CA758754 [GTCCGCATCCGGGTCAAATCAAATCGAGAGAGAGCCCCATCTCGCCTCGCCTCCTCCTCCCTCCTCCCCATTCCCCCGCCGCCGCCGCCGAGGGCGCCGCGACCTGAGAGCACACGCACGCCCGCCATGTGGCGCCGCCTCCAAACCCTGGCCCCGGCCCTGCGCCGCGCCGCCTCCGCCTCCGCCTCCGCGGCGGCATCGGGCGCCGCGGGCCCCGCCACCCTCGCCCGCGCCGCGCCGCTCTCCACGGCGGGCGCCGCCGCCTTCCGCCGCACCAGACCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGTCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCCCTACGGCGTCCTTGGTTATGAATACACACATTTGGCCATCAAGCAGGTGGTAGTTTTTTCCCCTAGGGATTTTGTCCAAACAAAAAACTTATGCGATGCTTGACCTGTGCATTT ]
[+] EMBL CB651183 [ AGAGAGAGCCCCTTCTCGCCTCGCCTCCTCCTCCCTCCTCCCCATTCCCCCGCCGCCGCCGCCGAGGGCGCCGCGACCTGAGAGCACACGCACGCCCGCCATGTGGCGCCGCCTCCAAAGCCTGGCCCCGGCCCTGCGCCGCGCCGCCTCCGCCTCCGCCTCCGCGGCGGCATCGGGCGCCGCGGGCCCCGCCTCCCTCGCCCGCGCCGCGCCGCTCTCCACGGCGGCCGCCGCCGCCTTCCGCCGCACCAGCCCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGCTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCCGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGAGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACCCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAaa ]
[+] EMBL AK071340 [ CTCCCTCCTCCCCATTCCCCCGCCGCCGCCGCCGAGGGCGCCGCGACCTGAGAGCACACGCACGCCCGCCATGTGGCGCCGCCTCCAAACCCTGGCCCCGGCCCTGCGCCGCGCCGCCTCCGCCTCCGCCTCCGCGGCGGCATCGGGCGCCGCGGGCCCCGCCTCCCTCGCCCGCGCCGCGCCGCTCTCCACGGCGGCCGCCGCCGCCTTCCGCCGCACCAGCCCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAAGCAGCCA ]
[+] EMBL AU069902 [ CCGCCGCACCAGCCCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCG TTTTCTTGNGTATCCTAATGGNCATCTGGTGTGATGGACCTGGTCTATTCAGATCATGC ACAG TTATTTTCAGTGCTtca ]
[-] EMBL CB651184 [ GCCCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAAGC ]
[+] EMBL CF324816 [ TGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGT ]
[+] EMBL BE040401 [ CCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCCCTACGGCGTCCTTGGTTATGAATACACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTTATGCGATGCTTGACCTGTGCATTT ]
[+] EMBL BE228939 [ GTGGTGAAGGAGANGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCNTTGGTGATGGTGGTGATCCACATGGACATGATGATGACGACNAGCATCNCCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAANAATTTGATGAGGCAGATGATTTCNTTTAAACCTTTTTAGCACCACACTGCTCTACNGCGTCCTTNTTTTTGAATGCACACATTTGGCCATCAACCNNGTGGTANTTTTTT CCTTA GGATTTTGTCCAAACAAAAAACTCAT CCANGCTTGACCTGTGCATTTCCTTCNGAGCNTCNNCNAATAAAANATG ]
[-] EMBL C26927 [ ggTCTGGTTGAAAAAAGATGAACCCGCATGAGTGCCCAGNCTGGTCACAATATTTTGTGCTTAAGGTCATTGGTNATGGTGGTGATCCAGATGGACATGATGATGACNACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATGTTCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGC ]
[+] EMBL AU078014 [ ATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAAGCAGCCACTAAATCTTTAAAAA ]
[+] EMBL CA765101 [ AAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCNTCTGGTGTGACGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAAGCAGCCACTAAATCTTTAAAAAA]
consensusID : consensus_13076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence
[TCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF317002 [TCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13076#0 GTCCGCATCCGGGTCAAATCAAATCGAGAGAGAGCCCCATCTCGCCTCGCCTCCTCCTCC 60
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 CTCCTCCCCATTCCCCCGCCGCCGCCGCCGAGGGCGCCGCGACCTGAGAGCACACGCACG 120
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 CCCGCCATGTGGCGCCGCCTCCAAACCCTGGCCCCGGCCCTGCGCCGCGCCGCCTCCGCC 180
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 TCCGCCTCCGCGGCGGCATCGGGCGCCGCGGGCCCCGCCTCCCTCGCCCGCGCCGCGCCG 240
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 CTCTCCACGGCGGCCGCCGCCGCCTTCCGCCGCACCAGCCCTCTCCTGTCCGGGGACAAG 300
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 CCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCG 360
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 GCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACC 420
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 AAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGT 480
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 GGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAACCGCAT 540
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 GAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCA 600
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 GATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTG 660
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 ATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTC 720
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 TACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTTCC 780
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 TTAGGGATTTTGTCCAAACAAAAAACTCATCGAGGCTTGACCTGTGCATTTCCTTCGGAG 840
consensus_13076#1 ------------------------------------------------------------
consensus_13076#0 CATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCAT 900
consensus_13076#1 --TCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCAT 58
**********************************************************
consensus_13076#0 CTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGA 960
consensus_13076#1 CTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAAAAAAAAAAAA 118
************************************************* * *
consensus_13076#0 GTCCCTGTTTGCAAGCAGCCACTAAATCTTTAAAAAA----------------------- 997
consensus_13076#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 178
** * * *** ******
consensus_13076#0 ---------------------------------
consensus_13076#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 211
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||