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Oryza sativa
cluster # 13085 cluster # 13085       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13085#0 length = 680 sequences # 11  
consensus_13085#1 length = 482 sequences # 1  

consensusID : consensus_13085#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 680
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA-GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACCGCCATT-TGGTC-TGTTCGTC-GTCCGTGAAGGCCGACGCGGCGGAAGGGGGCGGCGGAGGCCGCCGCTCGGCCGCACGAGGGCGGCGCGTGGGCGATGAACCCGACTACGTCGGGACGCAGCCGCGGGCGGGGGGGGGGCGACGTGTAAGGGCCCGAGGGCACCGTCGGGGGGAAGGCCCGGGGGGCGCGCGAGA]

[-] EMBL CA756546             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTG                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CA761408             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTG                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA759803             [                    TTTTTTTTTTTTTTTTTTTTTTGAAAAGAAGGAACGATTTCCATTACTACGGATGAGGGGCAAACAATGTTCAAAGACCACAAATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGGAGGTACAGCACTGTTTTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCCCTAGAGAGTAAAGGAACTGATTTACAGAACCATCAAACTTCATTCAGGGGAAGGGGACAGCAATGCCCATGCTTTAAAATTCGGGAAGGGGGGCGACTTGGCGCAAATCCATCATTTGGGCGGAAAAGTAGGGTGAATGAAAGGCTCCCTTTGCATCAAGGCCATTTTGGGGCTGATGAAACCTTCGGCTTTTGCCCAACAGTTGGTGAGTTACCGCCATT TGGGC TGTTCGGC GTCCGGGAAGGGCCACTCGGCGGAAGGGGGCGGCGGAGGCCGCCGCTCGGCCGCACGAGGGCGGCGCGTGGGCGATGAACCCGACTACGTCGGGACGCAGCCGCGGGCGGGGGGGGGGCGACGTGTAAGGGCCCGAGGGCACCGTCGGGGGGAAGGCCCGGGGGGCGCGCGAGA]
[-] EMBL AU068359             [                                  TTTTTTTTGAAAAGANTGANCGNTTNCCATTACTACTGATGATGTNCAGACAATGTNCAGAGACCACAGNTTTTNCACATGTCCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTNCTAAGTNCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGNCTTGCTCTGAAGGGAAGGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGNTGCTTTAAGATTCGTGTAGCGGTGCGACTTGTC NAGATCCATCATTTtgt                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AU058357             [                                     TTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGANGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAA                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BM038440             [                                      TTTTGAAAAGAATGAACGATTTCCATTACTACGGATGATGTGCAGACAAGGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAG TGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTGGGTGCTGATGAAACC TTGGC TTTGTCCAACAGTTGATGAGTTACCGCCATT GGGTC TGTTCGTCTGTCCGTGAAGGCC                                                                                                                                                                 ]
[-] EMBL BM038030             [                                      TTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTANAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGGATCAATGGCATTTTGGTGCTGATGAAA CTTTGG GTTTGTCCAA AGTTGATGAGTTA CGCCATTATGGTCTTGTTCGTC GTC                                                                                                                                                                           ]
[-] EMBL BG101698             [                                                AATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACT                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB677589             [                                                   GAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATT TGGTC TGTTCGTC GTCCGTGAAGGC                                                                                                                                                                  ]
[+] EMBL CF276466             [                                                                                                                               ttttTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGATAGTAGAGGAACTGATATACATAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATT TGGTC TGTTCGTC GTCCGTGAAGGCCGACGCGGTGGA                                                                                                                                                      ]
[+] EMBL BF475201             [                                                                                                                                                                             TTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAA ATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAGTGAAAGTCTCCCTTTGCATCCATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACCGCCATT TGGTC TGTTCGTC GTCCGTGAAGGCCGAC CGG                                                                                                                                                          ]


>consensus_13085#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTT CCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAG GGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAG TTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATA TTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGA AACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAG CGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCC CTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATG AGTTACCGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCCGACGCGGCGGAAGGGGGCGGC GGAGGCCGCCGCTCGGCCGCACGAGGGCGGCGCGTGGGCGATGAACCCGACTACGTCGGG ACGCAGCCGCGGGCGGGGGGGGGGCGACGTGTAAGGGCCCGAGGGCACCGTCGGGGGGAA GGCCCGGGGGGCGCGCGAGA



consensusID : consensus_13085#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCC]

[-] EMBL CF336656             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCC]


>consensus_13085#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGA GGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGA TACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGA GAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATG CCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGA GAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTT TGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATTTGGTCTGTTCGTCGTCCGTGAAGG CC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13085#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTT 60
consensus_13085#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------TTT 45
                       ******************************************               ***

consensus_13085#0      CCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAG 120
consensus_13085#1      TTTTTTTTTTTTTTTTTTT----------TTT------------TTTTTCACATGTTCAG 83
                          **  *  *  *  * *          **             ****************

consensus_13085#0      GGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAG 180
consensus_13085#1      GGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAG 143
                       ************************************************************

consensus_13085#0      TTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATA 240
consensus_13085#1      TTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATA 203
                       ************************************************************

consensus_13085#0      TTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGA 300
consensus_13085#1      TTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGA 263
                       ************************************************************

consensus_13085#0      AACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAG 360
consensus_13085#1      AACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAG 323
                       ************************************************************

consensus_13085#0      CGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCC 420
consensus_13085#1      CGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCC 383
                       ************************************************************

consensus_13085#0      CTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATG 480
consensus_13085#1      CTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATG 443
                       ************************************************************

consensus_13085#0      AGTTACCGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCCGACGCGGCGGAAGGGGGCGGC 540
consensus_13085#1      AGTTACTGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCC--------------------- 482
                       ****** ********************************                     

consensus_13085#0      GGAGGCCGCCGCTCGGCCGCACGAGGGCGGCGCGTGGGCGATGAACCCGACTACGTCGGG 600
consensus_13085#1      ------------------------------------------------------------
                                                                                   

consensus_13085#0      ACGCAGCCGCGGGCGGGGGGGGGGCGACGTGTAAGGGCCCGAGGGCACCGTCGGGGGGAA 660
consensus_13085#1      ------------------------------------------------------------
                                                                                   

consensus_13085#0      GGCCCGGGGGGCGCGCGAGA 680
consensus_13085#1      --------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)