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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 889 fasta sequence
[GTTCGTGACGCGTCACGCCCCGCGGCCTTCCCCTCCCAAAAAGCGGCAGGACGCAACCTGATCCCCATCCCCCGAGCAAGCAAAGCGGAGGAACGCGATGGCGTCGGCGCTGCTGAGGAAGGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGCGTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT-CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC-AGGCACACGTCCCTAGTTATAAAAATAACA-TT-GACAAG-TTGAAAGCA-AAAG-GGGTTGACTC-TGTTAT-C-TGTGTCTCT-GTGAATGACCCTTATG-CCCTGAATGGATGGG-C-AGAAAAGCTA-CAGGC-AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT-CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC-TTTCAATGTTGAGGTAGCTCCTT-CTGACTTCAAGGTTTCTGGTGCCGAGGT-GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGTCAACATGTTTGTCAGCATTGACGTGAG]
[+] EMBL AK069749 [GTTCGTGACGCGTCACGCCCCGCGGCCTTCCCCTCCCAAAAAGCGGCAGGACGCAACCTGATCCCCATCCCCCGAGCAAGCAAAGCGGAGGAACGCGATGGCGTCGGCGCTGCTGAGGAAGGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGCGTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATAACA TT GACAAG TTGAAAACA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGCAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGTCAACAT ]
[+] EMBL AK058396 [ GCAAGCAAAGCGGAGGAACGCGATGGCGTCGGCGCTGCTGAGGAAGGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGCGTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATAACA TT GACAAG TTGAAAGCA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGGCAACATGTTTGTCAGCATTGACGTGAG]
[+] EMBL CB679881 [ AGGAACCCTATGGCGTCGGCGCTGCTGAGGAAGGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGCGTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATAACA TT GACAAG TTGAAAGCA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAAT ]
[+] EMBL OSS15424A [ GGCGTCGGCGCTGCTGAGGAAGGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGCGTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCG CACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT CTTCGNCCTGCCTGGTGCATACACAGGAGTCTGTTCACAAGGCACACGTCCNTAGTTATAAAAATAACA TTNGACAAGTTTGAAAGCA AAAG GGGTTTACTCTTGTTAT CTTGTGTCTCTGGTGAATNACCCTTATG ]
[+] EMBL OSC1421 [ GTCGGCNCTGCTGAGGAAGGCGACGGTAGGCGGCTCCNCGGCGGCGGCNGCGGCGAGGTGGGCTTCCAGGGGGCTCGCNTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCNCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATAACATTT GACAAG TTNAAAGCA AAAGNGGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATGNCCCTGAATGGATGGG CAAGAAAAGCTACCAGGCNAAAAAATGCTt ]
[+] EMBL AU082086 [ ACCCCTNTCAAGGACATCTTCCATGGNAAGAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATANCA TT GACAAG TTGAAAGCA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGAT GG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAAaaaaa ]
[+] EMBL BI807758 [ CATGGGAAGAAA TGTTCATGCTTC GCCTGCCTGGTGCATACACAGGA TCTGTTCAC AGGCACACGTCCCTAGTGATAAAAATAACC TT GACAAG TTGAAAGCATAAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGATGGGCC AGAAAAGCTA CAGGC AAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACCAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTT GCC CCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGCGTGTC ATGTTGAGGTAGCTCCTTGCTGACTTCAAGGTTTCTGGTGCCGAGGTGGATCTT GACC AATCTGATCCGAGTAACGAAATTCTGTCCTTGTTTGTTTTCTCAT CAGCATGCATGCTTTT CTGTAGTAAAT AACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAaaaa ]
[-] EMBL CB679882 [ GAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATAACA TT GCCAAG TTGAAAGCA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GAGAATGACCCTTATG CCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTTTGGTGCCGAGGT GATTTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGGGTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTAATGCGCCCAGAATATTTGTTTT ]
[+] EMBL CB000221 [ TGTTCAC AGGCACACGTCCCTAGTTATAAAAA CCTT TT GACAAG TTGAAAGCA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTAAAAAaaa ]
[+] EMBL AU070430 [ GGTTGACTC TGTTATCC TGTGTCTCT GTGAATGACCCTTATGCCCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTTCCCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTG TACGCCCAGAATATTTGTTTTCCTGTTACAAAaa ]
consensusID : consensus_13086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[CAGGCAAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTTCCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGCTTTCAATGTTGAGGTAGCTCCTTCTGACTTCAAGGTTTCTGGTGCCGAGGTGATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU082094 [CAGGCAAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTTCCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGCTTTCAATGTTGAGGTAGCTCCTTCTGACTTCAAGGTTTCTGGTGCCGAGGTGATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence
[GAGGTAAACCGAAANTGTCCNTGTGTCGCTTGGTAGTTGGTGTTTCCGTCACGTGCCACGCCACNTGCATGCCCGTGTTGTGCCGTGGTAGGTAAACGTACAACCGAAAACGTCGACGTACTCCGAAGGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCCTGTTACAAATCACGCTTGCCGGGTAAAAAAAAAA]
[+] EMBL BQ906417 [GAGGTAAACCGAAANTGTCCNTGTGTCGCTTGGTAGTTGGTGTTTCCGTCACGTGCCACGCCACNTGCATGCCCGTGTTGTGCCGTGGTAGGTAAACGTACAACCGAAAACGTCGACGTACTCCGAAGGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCCTGTTACAAATCACGCTTGCCGGGTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13086#0 GTTCGTGACGCGTCACGCCCCGCGGCCTTCCCCTCCCAAAAAGCGGCAGGACGCAACCTG 60
consensus_13086#1 ------------------------------------------------------------
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 ATCCCCATCCCCCGAGCAAGCAAAGCGGAGGAACGCGATGGCGTCGGCGCTGCTGAGGAA 120
consensus_13086#1 ------------------------------------------------------------
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 GGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGC 180
consensus_13086#1 ------------------------------------------------------------
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 GTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGC 240
consensus_13086#1 ------------------------------------------------------------
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 CCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTT 300
consensus_13086#1 ------------------------------------------------------------
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 CCATGGGAAGAAAGTGGTCATCTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCACA 360
consensus_13086#1 ------------------------------------------------------------
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 GGCACACGTCCCTAGTTATAAAAATAACATTGACAAGTTGAAAGCAAAAGGGGTTGACTC 420
consensus_13086#1 ------------------------------------------------------------
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 TGTTATCTGTGTCTCTGTGAATGACCCTTATGCCCTGAATGGATGGGCAGAAAAGCTACA 480
consensus_13086#1 ----------------------------------------------------------CA 2
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 GGCAAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTTCCACAAAAGCTTGGA 540
consensus_13086#1 GGCAAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTTCCACAAAAGCTTGGA 62
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 TTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTT 600
consensus_13086#1 TTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTT 122
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 TGTTGACGATGGGAAGATCAAGGCTTTCAATGTTGAGGTAGCTCCTTCTGACTTCAAGGT 660
consensus_13086#1 TGTTGACGATGGGAAGATCAAGGCTTTCAATGTTGAGGTAGCTCCTTCTGACTTCAAGGT 182
consensus_13086#2 ------------------------------------------------------------
consensus_13086#0 TTCTGGTGCCGAGGTGATCTTGGACCAAATCTGATCCGAGTAACGA--AATTCTGTCGTT 718
consensus_13086#1 TTCTGGTGCCGAGGTGATCTTGGACCAAATCTGATCCGAGTAACGA--AATTCTGTCGTT 240
consensus_13086#2 ----------GAGGTAAACCGAAANTGTCCNTGTGTCGCTTGGTAGTTGGTGTTTCCGTC 50
***** * * * ** ** * * * ***
consensus_13086#0 GTTTGTTTTCTCATGCAGCATGCATGCTTT-TGCTGTAGTAAATAAACG--------AAA 769
consensus_13086#1 GTTTGTTTTCTCATGCAGCATGCATGCTTT-TGCTGTAGTAAATAAACG--------AAA 291
consensus_13086#2 ACGTGCCACGCCACNT-GCATGCCCGTGTTGTGCCGTGGTAGGTAAACGTACAACCGAAA 109
** ** ****** * ** *** ** *** ****** ***
consensus_13086#0 AC-TCGAC-TACTC---GAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCC 824
consensus_13086#1 AC-TCGAC-TACTC---GAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCC 346
consensus_13086#2 ACGTCGACGTACTCCGAAGGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCC 169
** ***** ***** *****************************************
consensus_13086#0 AGAATATTTGTTTTCC-TGTTACAAATCA-GCTTGCCGGTCAACATGTTTGTCAGCATTG 882
consensus_13086#1 AGAATATTTGTTTTCC-TGTTACAAATCA-GCTTGCCGGGCAAAAAAAAAAAAAAAAAAA 404
consensus_13086#2 AGAATATTTGTTTTCCCTGTTACAAATCACGCTTGCCGGGTAAAAAAAAAA--------- 220
**************** ************ ********* ** *
consensus_13086#0 ACGTGAG----------- 889
consensus_13086#1 AAAAAAAAAAAAAAAAAA 422
consensus_13086#2 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||