These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13087#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 703 fasta sequence [CCGNGACGCTTGGGTAACTCCCTNTCCCTCAACAATTTCTNTTCTCCTCTCCACCCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGG-CGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCT-GCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATNGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGGCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGCAGGGGGGTGTCCCCCTCCTCTTCTTCCTCCCGTCTGTATCCACGCTGCCACGCGGGGGGACGGTGCAGCCTCTCGGGGCGCCCCCGGGCGAGAGGGCCGGGCTCGCACCGAGCCTCGCGTCGGCAACGCCCGCACTGAGGCGCGCCGCGTCAGCGGCGGCGCGTCCCGCGCCGGTCGCGCCCCGACCCGCGCGCGTCGCGCGCTTCGCGGCGGGCCG] [+] EMBL C28538 [CCGNGACGCTTGGGTAACTCCCTNTCCCTCAACAATTCTTNATGTCCTCTCCACCCCTCCCCTATGGATCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGG NGNTCCCCCTCTTTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTNACAGCAGCNATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCT GCATGGATGGGCCGACGACGGCGGTGGTGGCG ] [+] EMBL C28899 [ TTCTCTTCTCCTCTCCACCCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGGNCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATNGGGGACGCGGCGGC GCGTGGACGGCGACGTCTNGCATGGATGGGCCGACGAC GNGGTNGTNGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATNGCGACGACGGCATGGAT ] [+] EMBL AU069056 [ TTCTTTTCTCCTCTCCACCCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTNCGG NGCTCCCCCTCTNTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACANCAGCNATGCAGACATNGGGGACGCGGCGGCGGCGTNGACGGCGACGTCT TCATGGATGGGCCGACGACGGCGGT ] [+] EMBL AU085738 [ CTCNNCACCCCTCCCCACCGGCTCACCNCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGN CGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGC GCGT ] [+] EMBL CA756085 [ TCCGATCGGAGGAGGGGAGCAACGGCAGTGCGG CGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCT GCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGGCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGCAGGGGGGTGTCCCCCTCCTCTTCTTCCTCCCGTCTGTATCCACGCTGCCACGCGGGGGGACGGTGCAGCCTCTCGGGGCGCCCCCGGGCGAGAGGGCCGGGCTCGCACCGAGCCTCGCGTCGGCAACGCCCGCACTGAGGCGCGCCGCGTCAGCGGCGGCGCGTCCCGCGCCGGTCGCGCCCCGACCCGCGCGCGTCGCGCGCTTCGCGGCGGGCCG] consensusID : consensus_13087#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 637 fasta sequence [ACCCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGGCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCTGCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCTGTTTCTTGGATGAGGTTTGTGAGAATTTGTGATTTGTGATTTGAAACCTTAAA] [+] EMBL AK120383 [ACCCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGGCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCTGCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGT ] [+] EMBL CF332568 [ CCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGGCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCTGCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGG ] [+] EMBL CB665680 [ ACGGCCACTTCTGCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGG ] [-] EMBL CB665681 [ GCTCCTCCCTCCGGCTTGTGGAGGGGGAGATACGTCGCCGTGGATGGCGACGACGGCATGGATGGGGCGACATAGGTTGCCCGGTCGGCGACGGCGGTGCGGAAGCGGTTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCCCCGCATGCAAAGGAGTTTGCCGGCGACGACGATGATGTTGTTTCTTTTTTTTTTCTAAGTTTCCATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCTGTTTCTTG ] [-] EMBL CB644582 [ CCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCTGTTTCTTGGATGAGGTTTGTGAGAATTTGTGATTTGTGATTTGAAACCTTAAA] consensusID : consensus_13087#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 390 fasta sequence [GGGACCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACG-ATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU085739 [GGGACCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACG ATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF332569 [ ATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGAATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13087#1 ----------------------------------------------------ACCCCTCC 8 consensus_13087#2 ------------------------------------------------------------ consensus_13087#0 CCGNGACGCTTGGGTAACTCCCTNTCCCTCAACAATTTCTNTTCTCCTCTCCACCCCTCC 60 consensus_13087#1 CCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGT 68 consensus_13087#2 ------------------------------------------------------------ consensus_13087#0 CCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGT 120 consensus_13087#1 GCGGCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGA 128 consensus_13087#2 ------------------------------------------------------------ consensus_13087#0 GCGGCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGA 180 consensus_13087#1 TGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCTGCATGGATGGGCCGACG 188 consensus_13087#2 ------------------------------------------------------------ consensus_13087#0 TGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCTGCATGGATGGGCCGACG 240 consensus_13087#1 ACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGG 248 consensus_13087#2 ------------------------------------------------------------ consensus_13087#0 ACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGG 300 consensus_13087#1 GGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGG 308 consensus_13087#2 GGGACCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGG 60 consensus_13087#0 GGGAGCGACGACGACGTGGATNGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGG 360 **** **************** ************************************** consensus_13087#1 ACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTAC 368 consensus_13087#2 ACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTAC 120 consensus_13087#0 ACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGGCCCTAC 420 ***************************************************** ****** consensus_13087#1 GAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGA 428 consensus_13087#2 GAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGA 180 consensus_13087#0 GAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGA 480 ************************************************************ consensus_13087#1 GGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGATGA 488 consensus_13087#2 GGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGATGA 240 consensus_13087#0 GGAGGCAGGGGGGTGTCCCCCTCCTCTTCTTCCTCCCGTCTGTATCCACGCTGCCACGCG 540 ***** ********* * * ** * * * * * * * * ** * * consensus_13087#1 TGTTGTTTCTTTTTTTTTTCTAAGTTTACATGT-TGATTGCCGTGGATTTGAATCCAATG 547 consensus_13087#2 TGTTGTTTCTTTTTTTTTTCTAAGTTTACATGT-TGATTGCCGTGGATTTGAATCCAATG 299 consensus_13087#0 GGGGGACGGTGCAGCCTCTCGGGGCGCCCCCGGGCGAGAGGGCCGGGCTCGCACCGA--G 598 * * * * ** * * * ** * ** * * * * * * consensus_13087#1 TTTTGTGTTGATGAATGGATGT-TTGTGATTGGATTCTGTTTCTTGGATGAGGTTTGTGA 606 consensus_13087#2 TTTTGTGTTGATGAATGGATGT-TTGTGATTGGATTCAAAAAAAAAAAAAAAAAAAAAAA 358 consensus_13087#0 CCTCGCGTCGGC-AACGCCCGCACTGAGGCGCGCCGCGTCAGCGGCGGCGCGTCCCGCGC 657 * * ** * ** * * ** * * * consensus_13087#1 GAATTTGTGATTTGTGATTTGAAACCTTAAA--------------- 637 consensus_13087#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 390 consensus_13087#0 CGGTCGCGCCCCGACCCGCGCGCGTCGCGCGCTTCGCGGCGGGCCG 703 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||