|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13091#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 3013 fasta sequence
[TCACGCTTCACTCTCCTTCCTCCCACCATCCCGATCTCCGGCGATGTCGCTCCACCAGCGGCCGCACCAGAAGCCGCCGGCGACCGACTCCCTCCCCGCCTCCGCCGCCGCCGCCGCCGCCGCGCCTTCTCGCCCGCTCCCACTCCTCACCCTCCCTTACCTCTTCTCCCTCCTCGCGCTCCTCCTCCTCCTCGCCCTCCTCTTCCCCTGGGGCCCTCCCAGCCACTCCTCTGCCCCCGCCTCGCCGTGGCGGGGGTACACGCTCCAGGAGGCCGCCGCCTTCGCCGCTCGCGCGGGAAACGGCACCATCGTCCTCGCCGCCGTCTCCGGGCCCTACCTCCCCTTCCTCTCCAACTGGCTCATCACCGTCCGCCGCGCCGGCCGCGCCGACCAGGTGCTCGTCGTCGCCGAGGACTATGACACGCTCGAGCGGATCAATGCGGCGTGGCCGGGACACGCCGTCCTCGTGCCCCCCGCGCCCGACGCCCAGGTCGCCCACAAGTTCGGATCCCAGGGGTTCTTTAACTTCACCTCGCGGCGGCCGCGGCACTTGCTGCAGATTCTTGAGCTAGGGTACAGTGTCATGTACAACGATGTCGACATGGTGTGGCTCGCCGACCCATTCCCGTATATCGTCGGGGATCATGACGTGTACTTCATGGATGATATGACTCCTGTGAAGCCATTGGATCATTCACATGAGCTGCCACCACCTGGTAAGAAGGGGCGGACTTACATCTGCAGCTGCATGATATTCCTGCGGCCAACGGAAGGGGCTAAGCTGCTATTGAGGAAGTGGATTGAGGAGCTCAAGGAGCAGCCCTGGTCAAAGAAGCAGAAAGCAAATGATCAGCCAGCATTCAACTGGGCTTTGAACAAGACTGCAGGACAGGTAGATGTGTATCTGCTGCCTCAGTCTGCATTTCCAACTGGAGGTTTATATTTTAAGAATAAAACATGGGTAAAGGAAACAAAGGGCAAGCATGTCATCATACACAATAACTATATCACAGGATTTGAGAAGAAGATAAAACGGTTTCGTGATCATGGGCTATGGCTTGTCGATGAACATAGTGATGAGTCACCACTTGGTAGAATATGAGCAAGCTGGCAAAGCTACACCACATCTGTCCTTGCAACAGCATCAAACTTTTGCAGCTGGTGTTTAACTGGTTGGGATTGCGGAACCGTGGGATTGATTTGCCATCCGCCACACAAAAATACAGCAACTGGATATGTGCAGTAGTTTTTAATTGTACATCAAGCCCCTTTCAGAGCGACCTGTTGTCATGATGATTATTTTTATTTCATTATCTTTTACGAATACGGCAGCAGTAAGATCTTAGGGTGAGAATGTAGCTATTTAAGGGAATGTGGCCACAAATATTAGCGAGTCAAGTAGTAACTCATTGGTCTATATGTATAGCATGGTAATTTTGTTAACCTGTAGGCATTTTTTTTGACACTGGATTGTGTTTAATATTATTCTTTTTACCTCCTTTCATAAAGAACTCTAACTGTCATGTGTGATGGCCTGCTGGGTGTCCACAAAACTGTGCTAATGATGA-CTTGTAAGTTGTAATTCCGTATAT-AATTATTTAA-CATGCTCAGGTAATCCCTTGCTTTTCTTTACCATCGCAATGCAACACATGAGATGAGTAGACCTTTCTTAGTATGCATTAAATATGGCATGCCTCTCTGAAACATACAGGACACACAGGACTATGATGAAGTGGCACAAGATAAGATGGCTACATATAAGAGGGATCAGGATTCACGGCTGTATCATGTGAATTTTGGAGCATAAAGCTTCAGTTCGAGGCTTTGGGCCTTGTGACCTTCTCGTCTCTCCATGTCTATTATTTTTCTTCACACAAACCTGCGGAGCTTGATGCGTCAGGATCGAATCGCCTGTTTTGGCTCATTCCATTCCAGCCAAAACGCTTGCGATTGGAGTAAGAATCCAAGAACCAGTGTGGCTGCTGCCATTGGACCCTTTCCTTCTCTGGTGCCTCCCAACTTTGCTTCCAGCAGCGGTAATGCCGTTGCCTTTGCCACACACAACGAACACCGGCGCGCACACATGTATATATGCTTCTGCCCATGCTCGGATCTGCACAGAAAACACCATATTTCTTCCTTGTGATCACGAGCTAACCTTGCATCTCTCATTGTCTTTGGCAAGGATCGATGGGCCAGGCTGCTGCCAAGGCGAAGCAAGGTGGCGATCAGGCAGAGAACAAGACTGGCAAGGACGAGAAGGTTGCGAAACCTAAGGATGCCAAGGATCTCACCGACTTCATGGAAAAAAACTACGACTCGA-TCAAGGACGTGACAAGCTTCGAAGATTTCTACCATGCCTTCTACGAGCTCATCGAAAAATTCTGTGAGGAACGTGGGCAATTGCAGTACAGGATACCGGAAAAAGCGGAACTTCAGAAGCAGTACGAGAGGGTGAACAAGAGCCCCCAGAAGGGGCAGAACCTGAGCAGGAAGCAGTTCATGGAGCTGGCCGGGCAGGTGATCAAGGTGAACAGCTTCACCTTCGGCAAGGCCACCATGGACGTGCTGGTCGTCCTCTTCGGCGCCCCCGTCTGCGCCCTCCTCGCCAAGAGGGTCGTCCCGGGCCTCAAGTCCTTCTCCGACGACGTCGTCATCCCCGTCGCCACCTCCGGCGCCGTCGTCTACCTCGCCAAGACCAACAAGCTGTGATCGAGGTGAATCGATCGTTCCAGAATCATATCCAGACTATGGCTAACAAATTATCGCGAGAATAAAGGTGAGGGAGAAAAAACGTACGTGGTGTCATGTCGTATAAAGTTTGCGTTGTGGCCTTGGTTAAATTTCGCCCAAATTGTAAAGATTATTTGAGAGTGGATTTTTATATTCACTCTCTTTTATATGTCTTCACTGTTCACACCTGTGAAATCTAGGAGAAATCTGTATAATAATATTCGTAAAATCTGATATGTGCACATGCACGAATCCTAGTTCGTCCCCAAAAAAAAAAAAA]
[+] EMBL AK073634 [TCACGCTTCACTCTCCTTCCTCCCACCATCCCGATCTCCGGCGATGTCGCTCCACCAGCGGCCGCACCAGAAGCCGCCGGCGACCGACTCCCTCCCCGCCTCCGCCGCCGCCGCCGCCGCCGCGCCTTCTCGCCCGCTCCCACTCCTCACCCTCCCTTACCTCTTCTCCCTCCTCGCGCTCCTCCTCCTCCTCGCCCTCCTCTTCCCCTGGGGCCCTCCCAGCCACTCCTCTGCCCCCGCCTCGCCGTGGCGGGGGTACACGCTCCAGGAGGCCGCCGCCTTCGCCGCTCGCGCGGGAAACGGCACCATCGTCCTCGCCGCCGTCTCCGGGCCCTACCTCCCCTTCCTCTCCAACTGGCTCATCACCGTCCGCCGCGCCGGCCGCGCCGACCAGGTGCTCGTCGTCGCCGAGGACTATGACACGCTCGAGCGGATCAATGCGGCGTGGCCGGGACACGCCGTCCTCGTGCCCCCCGCGCCCGACGCCCAGGTCGCCCACAAGTTCGGATCCCAGGGGTTCTTTAACTTCACCTCGCGGCGGCCGCGGCACTTGCTGCAGATTCTTGAGCTAGGGTACAGTGTCATGTACAACGATGTCGACATGGTGTGGCTCGCCGACCCATTCCCGTATATCGTCGGGGATCATGACGTGTACTTCATGGATGATATGACTCCTGTGAAGCCATTGGATCATTCACATGAGCTGCCACCACCTGGTAAGAAGGGGCGGACTTACATCTGCAGCTGCATGATATTCCTGCGGCCAACGGAAGGGGCTAAGCTGCTATTGAGGAAGTGGATTGAGGAGCTCAAGGAGCAGCCCTGGTCAAAGAAGCAGAAAGCAAATGATCAGCCAGCATTCAACTGGGCTTTGAACAAGACTGCAGGACAGGTAGATGTGTATCTGCTGCCTCAGTCTGCATTTCCAACTGGAGGTTTATATTTTAAGAATAAAACATGGGTAAAGGAAACAAAGGGCAAGCATGTCATCATACACAATAACTATATCACAGGATTTGAGAAGAAGATAAAACGGTTTCGTGATCATGGGCTATGGCTTGTCGATGAACATAGTGATGAGTCACCACTTGGTAGAATATGAGCAAGCTGGCAAAGCTACACCACATCTGTCCTTGCAACAGCATCAAACTTTTGCAGCTGGTGTTTAACTGGTTGGGATTGCGGAACCGTGGGATTGATTTGCCATCCGCCACACAAAAATACAGCAACTGGATATGTGCAGTAGTTTTTAATTGTACATCAAGCCCCTTTCAGAGCGACCTGTTGTCATGATGATTATTTTTATTTCATTATCTTTTACGAATACGGCAGCAGTAAGATCTTAGGGTGAGAATGTAGCTATTTAAGGGAATGTGGCCACAAATATTAGCGAGTCAAGTAGTAACTCATTGGTCTATATGTATAGCATGGTAATTTTGTTAACCTGTAGGCATTTTTTTTGACACTGGATTGTGTTTAATATTATTCTTTTTACCTCCTTTCATAAAGAACTCTAACTGTCATGTGTGATGGCCTGCTGGGTGTCCACAAAACTGTGCTAATGATGA CTTGTAAGTTGTAATTCCGTATAT AATTATTTAA CATGCTCAGGTAATCCCTTGCTTTTCTTTACCATCGCAATGCAACACATGAGATGAGTAGACCTTTCTTAGTATGCATTAAATATGGCATGCCTCTCTGAAACATACAGGACACACAGGACTATGATGAAGTGGCACAAGATAAGATGGCTACATATAAGAGGGATCAGGATTCACGGCTGTATCATGTGAATTTTGGAGCATAAAGCTTCAGTTCGAGGCTTTGGGCCTTGTGACCTTCTCGTCTCTCCATGTCTATTATTTTTCTTCACACAAACCTGCGGAGCTTGATGCGTCAGGATCGAATCGCCTGTTTTGGCTCATTCCATTCCAGCCAAAACGCTTGCGATTGGAGTAAGAATCCAAGAACCAGTGTGGCTGCTGCCATTGGACCCTTTCCTTCTCTGGTGCCTCCCAACTTTGCTTCCAGCAGCGGTAATGCCGTTGCCTTTGCCACACACAACGAACACCGGCGCGCACACATGTATATATGCTTCTGCCCATGCTCGGATCTGCACAGAAAACACCATATTTCTTCCTTGTGATCACGAGCTAACCTTGCATCTCTCATTGTCTTTGGCAAGGATCGATGGGCCAGGCTGCTGCCAAGGCGAAGCAAGGTGGCGATCAGGCAGAGAACAAGACTGGCAAGGACGAGAAGGTTGCGAAACCTAAGGATGCCAAGGATCTCACCGACTTCATGG AAAAAACTACGACTCGA TCAAGGACGTGACAAGCTTCGAAGATTTCTACCATGCCTTCTACGAGCTCATCGAAAAATTCTGTGAGGAACGTGGGCAATTGCAGTACAGGATACCGGAAAAAGCGGAACTTCAGAAGCAGTACGAGAGGGTGAACAAGAGCCCCCAGAAGGGGCAGAACCTGAGCAGGAAGCAGTTCATGGAGCTGGCCGGGCAGGTGATCAAGGTGAACAGCTTCACCTTCGGCAAGGCCACCATGGACGTGCTGGTCGTCCTCTTCGGCGCCCCCGTCTGCGCCCTCCTCGCCAAGAGGGTCGTCCCGGGCCTCAAGTCCTTCTCCGACGACGTCGTCATCCCCGTCGCCACCTCCGGCGCCGTCGTCTACCTCGCCAAGACCAACAAGCTGTGATCGAGGTGAATCGATCGTTCCAGAATCATATCCAGACTATGGCTAACAAATTATCGCGAGAATAAAGGTGAGGGAGAAAAAACGTACGTGGTGTCATGTCGTATAAAGTTTGCGTTGTGGCCTTGGTTAAATTTCGCCCAAATTGTAAAGATTATTTGAGAGTGGATTTTTATATTCACTCTCTTTTATATGTCTTCACTGTTCACACCTGTGAAATCTAGGAGAAATCTGTATAATAATATTCGTAAAATCTGATATGTGCACATGCACGAATCCTA ]
[+] EMBL AK071425 [ TCCTCCCACCATCCCGATCTCCGGCGATGTCGCTCCACCAGCGGCCGCACCAGAAGCCGCCGGCGACCGACTCCCTCCCCGCCTCCGCCGCCGCCGCCGCCGCCGCGCCTTCTCGCCCGCTCCCACTCCTCACCCTCCCTTACCTCTTCTCCCTCCTCGCGCTCCTCCTCCTCCTCGCCCTCCTCTTCCCCTGGGGCCCTCCCAGCCACTCCTCTGCCCCCGCCTCGCCGTGGCGGGGGTACACGCTCCAGGAGGCCGCCGCCTTCGCCGCTCGCGCGGGAAACGGCACCATCGTCCTCGCCGCCGTCTCCGGGCCCTACCTCCCCTTCCTCTCCAACTGGCTCATCACCGTCCGCCGCGCCGGCCGCGCCGACCAGGTGCTCGTCGTCGCCGAGGACTATGACACGCTCGAGCGGATCAATGCGGCGTGGCCGGGACACGCCGTCCTCGTGCCCCCCGCGCCCGACGCCCAGGTCGCCCACAAGTTCGGATCCCAGGGGTTCTTTAACTTCACCTCGCGGCGGCCGCGGCACTTGCTGCAGATTCTTGAGCTAGGGTACAGTGTCATGTACAACGATGTCGACATGGTGTGGCTCGCCGACCCATTCCCGTATATCGTCGGGGATCATGACGTGTACTTCATGGATGATATGACTCCTGTGAAGCCATTGGATCATTCACATGAGCTGCCACCACCTGGTAAGAAGGGGCGGACTTACATCTGCAGCTGCATGATATTCCTGCGGCCAACGGAAGGGGCTAAGCTGCTATTGAGGAAGTGGATTGAGGAGCTCAAGGAGCAGCCCTGGTCAAAGAAGCAGAAAGCAAATGATCAGCCAGCATTCAACTGGGCTTTGAACAAGACTGCAGGACAGGTAGATGTGTATCTGCTGCCTCAGTCTGCATTTCCAACTGGAGGTTTATATTTTAAGAATAAAACATGGGTAAAGGAAACAAAGGGCAAGCATGTCATCATACACAATAACTATATCACAGGATTTGAGAAGAAGATAAAACGGTTTCGTGATCATGGGCTATGGCTTGTCGATGAACATAGTGATGAGTCACCACTTGGTAGAATATGAGCAAGCTGGCAAAGCTACACCACATCTGTCCTTGCAACAGCATCAAACTTTTGCAGCTGGTGTTTAACTGGTTGGGATTGCGGAACCGTGGGATTGATTTGCCATCCGCCACACAAAAATACAGCAACTGGATATGTGCAGTAGTTTTTAATTGTACATCAAGCCCCTTTCAGAGCGACCTGTTGTCATGATGATTATTTTTATTTCATTATCTTTTACGAATACGGCAGCAGTAAGATCTTAGGGTGAGAATGTAGCTATTTAAGGGAATGTGGCCACAAATATTAGCGAGTCAAGTAGTAACTCATTGGTCTATATGTATAGCATGGTAATTTTGTTAACCTGTAGGCATTTTTTTTGACACTGGATTGTGTTTAATATTATTCTTTTTACCTCCTTTCATAAAGAACTCTAACTGTCATGTGTGATGGCCTGCTGGGTGTCCACAAAACTGTGCTAATGATGA CTTGTAAGTTGTAATTCCGTATAT AATTATTTAA C ]
[+] EMBL CA763987 [ GGTTTATATTTTAAGAATAAAACATGGGTAAAGGAAACAAAGGGCAAGCATGTCATCATACACAATAACTATATCACAGGATTTGAGAAGAAGATAAAACGGTTTCGTGATCATGGGCTATGGCTTGTCGATGAACATAGTGATGAGTCACCACTTGGTAGAATATGAGCAAGCTGGCAAAGCTACACCACATCTGTCCTTGCAACAGCATCAAACTTTTGCAGCTGGTGTTTAACTGGTTGGGATTGCGGAACCGTGGGATTGATTTGCCATCCGCCACACAAAAATACAGCAACTGGATATGTGCAGTAGTTTTTAATTGTACATCAAGCCCCTTTCAGAGCGACCTGTTGTCATGATGATTATTTTTATTTCATTATCGTTTACGAATACGGCAGCAGTAAGATCTTAGGGTGAGAATGTAGCTATTTAAGGGAATGTGGCCACAAATATTAGCGAGTCAAGTAGTAACTCATTGGTCTATATGTATAGCATGGTAATTTTGTTAACCTGTAGGCA TTTTTTTGACACTGGATTGTGTTTAATATTATTCTTTTTACCTCCTTTCATAAAGAACTCTAACTGTCATGTGCGATGGCCTGCTGGGTGTCCACAAAACTGTGCTAATGATGA CTTGTAAGTTGTAATTCCGTATAT AATTATTTAA CATGCTCAGGTAATCCCTTG ]
[+] EMBL AU066285 [ GATTGATTTGCCATCCGCCACACAAAAATACAGCAACTGGATATGTGCAGTAGTTTTTAATTGTACATCAAGCCCCTTTCAGAGCGACCTGTTGTCATGATGATTATTTTTATTTCATTATCTTTTACGAATACGGCAGCAGTAAGATCTTAGGGTGAGAATGTAGCTATTTAAGGGAATGTGGCCACAAATATTAGCGAGTCAAGTAGTAACTCATTGGTCTATATGTATAGCATGGTAATTTTGTTAACCTGTAGGCATTTTTTTTGACACTGGATTGTGTTTAATATTATTCTTTTTACCTCCTTTCATAAAGACCTCTAACTGTCATGTGTGATGGCCTGCTGGGTGTCCACAAAACTGTGCTAATGATGACCTTGTAAGTTGTAATTCCGNATATAAATTATTTAACCATGCTCAGGTAA ]
[+] EMBL AK059319 [ CATATTTCTTCCTTGTGATCACGAGCTAACCTTGCATCTCTCATTGTCTTTGGCAAGGATCGATGGGCCAGGCTGCTGCCAAGGCGAAGCAAGGTGGCGATCAGGCAGAGAACAAGACTGGCAAGGACGAGAAGGTTGCGAAACCTAAGGATGCCAAGGATCTCACCGACTTCATGGAAAAAAACTACGACTCGA TCAAGGACGTGACAAGCTTCGAAGATTTCTACCATGCCTTCTACGAGCTCATCGAAAAATTCTGTGAGGAACGTGGGCAATTGCAGTACAGGATACCGGAAAAAGCGGAACTTCAGAAGCAGTACGAGAGGGTGAACAAGAGCCCCCAGAAGGGGCAGAACCTGAGCAGGAAGCAGTTCATGGAGCTGGCCGGGCAGGTGATCAAGGTGAACAGCTTCACCTTCGGCAAGGCCACCATGGACGTGCTGGTCGTCCTCTTCGGCGCCCCCGTCTGCGCCCTCCTCGCCAAGAGGGTCGTCCCGGGCCTCAAGTCCTTCTCCGACGACGTCGTCATCCCCGTCGCCACCTCCGGCGCCGTCGTCTACCTCGCCAAGACCAACAAGCTGTGATCGAGGTGAATCGATCGTTCCAGAATCATATCCAGACTATGGCTAACAAATTATCGCGAGAATAAAGGTGAGGGAGAAAAAACGTACGTGGTGTCATGTCGTATAAAGTTTGCGTTGTGGCCTTGGTTAAATTTCGCCCAAATTGTAAAGATTATTTGAGAGTGGATTTTTATATTCACTCTCTTTTATATGTCTTCACTGTTCACACCTGTGAAATCTAGGAGAAATCTGTATAA ]
[+] EMBL AU065913 [ CTTGTGATCACGAGCTAACCTTGCATCTCTCATTGTCTTTGGCAAGGNTCGATGGGCCAGGCTGCTGCCAAGGCGAAG AAGGTGGCGATCAGGCAGAGAACAAGACTGGCAAGGACGAGAAGGTTGCGAAACCTAAGGATGCCAAGGNTCTCACCGACTTCATGGAAAAAAACTACGACTCGA TCAAGGACGTGACAAGCTTCGAAGATTTCTACCATGCCTTCTACGAGCTCATCGAAAAATTCTGTGAGGAACGTGGGCAATTGCAGTACAGGATACCGGAAAAAGCGGAACTTCAGAAGCAGTACGAGAGGGTGAACAAGAGCCCCCAGNAGGGGCAGAACCTGAGCAGGAAGCAGTTCATGGAGCTGGC ]
[+] EMBL AU065952 [ CTTGTGATCACGAGCTAACCTTGCATCTCTCATTGTCTTTGGCAAGGATCGATGGGCCAGGCTGCTG CAAGGCGAA NAAGGTGGCGATCAGGCAGAGAACAAGACTGGCAAGGACGAGAAGGTTGCGAAACCTAAGGATGCCAAGGATCTCACCGACTTCATGG AAAAAACTACGACTCGA TCAAGGACGTGACAAGCTTCGAAGATTTCTACCATGCCTTCTACGA CTCATCG AAAATTCTGTGAGGAACGTGGG AATTGCAGTACAGGAT NCGG AAAAGCGG ACTTCAG AG AGT CG NAGGGTG ACAAG G CCCCAGA GGGCAG ACCTGA CAGGA ]
[+] EMBL CB683603 [ TTGTCATCACGAGCTAACCTTGCATCTCTCATTGTCTTTGGCAAGGATCGATGGGCCAGGCTGCTGCCAAGGCGAAGCAAGGTGGCGATCAGGCAGACAACAAGACTGGCAAGGACGAGAAGGTTGCGAAACCTAAGGATGCCAAGGATCTCACCGACTTCATGGAAAAAAACTACGACTCGA TCAAGGACGTGACAAGCTTCCAAGATTTCTACCATGCCTTCTACGAGCTCATCGAAAAATTCTGTGAGGAACGTGGGCAATTGCAGTACAGGATACCGGAAAAAGCGGAACTTCAGAACCAATACGAGAGGGTGAACAACAGCCCCCAGAAGGGGCAGAACCTGAGCAGGAAGCACTTCATGGAGCTGGCCGGGCAGGTGATCAAGGTGAACAGCTTCACCTTCGGCAAGGCCACCATGGACGTGCTGGTCGTCCTCTTCGGCGCCCCCGTCTGCGCCCTCCTCGCCAAGAGGGTCGTCCCGGGCCTCAAGTCCTTCTCCGACGACGTCGTCATCCCCGTCGCCACCTCCGGCGCCGTCGTCTACCTCGCCAAGACCAACAAGCTGTGATCGAGGTGAATCGATCGTTCCAGAATCATATCCAGACTATGGCTAACAAATTATCGCGAGAATAAAGGTGAGGGAGAAAAAACGTACGTGGTGTCATGTCGTATAAAGTTTGCGTTGTGGCCTTGGTTAAATTTCGCCCAAATTGTAAAGATTATTTGAGAGTGGATTTTTATATTCACTC ]
[+] EMBL C74974 [ ACCTTGCATCTCTCATTGTCTTTGGCAANGATCGATGGGCCAGGCTGCTGCCAAGGCGAA CAAGGTGGCGATCAGGCAGAGAACAAGACTGGCAAGGACGAGAAGGTTGCGAAACCTAAGGATGCCAAGGATCTCACCGACTTCATGGAAAAAAACTACGACTCGATTCAAGGACGTGACAAGCTTCGAAGATTTCTACCATGCCTTCTACGAGCTCATCGAAAAATTCTGTGAGGAACGTGGGCAATTGCAGTACAGGATACCGGAAAAAGCGGAACTTCAGAAGCAGTACGAGA ]
[+] EMBL AU174099 [ GGCGCCCCCGTNTGCGCCCTCCTCGCCAAGAGGGTCGTCCCGGGCCTCAAGTCCTTCTCCGACGACGTCGTCATCCCCGTCGCCACCTCCGGCGCCGTCGTNTACCTCGCCAAGACCAACAAGCTGTGATCGAGGTGAATCGATCGTTCCAGAATCATATCCAGACTATGGCTAACAAATTATCGCGAGAATAAAGGTGAGGGAGAAAAAACGTACGTGGTGTCATGTCGTATAAAGTTTGCGTTGTGGCCTTGGTTAAATTTCGCCCAAATTGTAAAGATTATTTGAGAGTGGATTTTTATATTCACTCTCTTTTATATGTCTTCACTGTTCACACCTGTGAAATNTAGGAGAAATCTGTATAATAATATTCGTAAAATCTGATATGTGCACATGCACGAATCCTAGTTCGTCCCCAAAAAAAAAAAAA]
consensusID : consensus_13091#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[TCTGAGNTGAATCGATCCGTTCCAGAATCATATCCAGACTATGGCTAACAAATTATCGCGAGAATAAAGGTGAGGGAGAAAAAACGTACGTGGTGTCATGTCGTATAAACGNCNCNCCCNNNCCCCCCCTNNNCTNTAAATTTCGCCCAAATTGTAAAGATTATTTGAGAGTGGATTTTTATATTCACTGCTGCTTTTATATGTCTTCACTGTTCACAGCCTGTGAAATCTAGGAGAAATCTGTATAATAATATTCGTAAAATCTGATATGTGCACATGCACGAATCCTAGTTCGTCCCCAAAAAAAAA]
[+] EMBL AU089794 [TCTGAGNTGAATCGATCCGTTCCAGAATCATATCCAGACTATGGCTAACAAATTATCGCGAGAATAAAGGTGAGGGAGAAAAAACGTACGTGGTGTCATGTCGTATAAACGNCNCNCCCNNNCCCCCCCTNNNCTNTAAATTTCGCCCAAATTGTAAAGATTATTTGAGAGTGGATTTTTATATTCACTGCTGCTTTTATATGTCTTCACTGTTCACAGCCTGTGAAATCTAGGAGAAATCTGTATAATAATATTCGTAAAATCTGATATGTGCACATGCACGAATCCTAGTTCGTCCCCAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13091#0 TCACGCTTCACTCTCCTTCCTCCCACCATCCCGATCTCCGGCGATGTCGCTCCACCAGCG 60
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GCCGCACCAGAAGCCGCCGGCGACCGACTCCCTCCCCGCCTCCGCCGCCGCCGCCGCCGC 120
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CGCGCCTTCTCGCCCGCTCCCACTCCTCACCCTCCCTTACCTCTTCTCCCTCCTCGCGCT 180
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CCTCCTCCTCCTCGCCCTCCTCTTCCCCTGGGGCCCTCCCAGCCACTCCTCTGCCCCCGC 240
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CTCGCCGTGGCGGGGGTACACGCTCCAGGAGGCCGCCGCCTTCGCCGCTCGCGCGGGAAA 300
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CGGCACCATCGTCCTCGCCGCCGTCTCCGGGCCCTACCTCCCCTTCCTCTCCAACTGGCT 360
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CATCACCGTCCGCCGCGCCGGCCGCGCCGACCAGGTGCTCGTCGTCGCCGAGGACTATGA 420
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CACGCTCGAGCGGATCAATGCGGCGTGGCCGGGACACGCCGTCCTCGTGCCCCCCGCGCC 480
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CGACGCCCAGGTCGCCCACAAGTTCGGATCCCAGGGGTTCTTTAACTTCACCTCGCGGCG 540
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GCCGCGGCACTTGCTGCAGATTCTTGAGCTAGGGTACAGTGTCATGTACAACGATGTCGA 600
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CATGGTGTGGCTCGCCGACCCATTCCCGTATATCGTCGGGGATCATGACGTGTACTTCAT 660
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GGATGATATGACTCCTGTGAAGCCATTGGATCATTCACATGAGCTGCCACCACCTGGTAA 720
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GAAGGGGCGGACTTACATCTGCAGCTGCATGATATTCCTGCGGCCAACGGAAGGGGCTAA 780
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GCTGCTATTGAGGAAGTGGATTGAGGAGCTCAAGGAGCAGCCCTGGTCAAAGAAGCAGAA 840
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 AGCAAATGATCAGCCAGCATTCAACTGGGCTTTGAACAAGACTGCAGGACAGGTAGATGT 900
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GTATCTGCTGCCTCAGTCTGCATTTCCAACTGGAGGTTTATATTTTAAGAATAAAACATG 960
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GGTAAAGGAAACAAAGGGCAAGCATGTCATCATACACAATAACTATATCACAGGATTTGA 1020
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GAAGAAGATAAAACGGTTTCGTGATCATGGGCTATGGCTTGTCGATGAACATAGTGATGA 1080
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GTCACCACTTGGTAGAATATGAGCAAGCTGGCAAAGCTACACCACATCTGTCCTTGCAAC 1140
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 AGCATCAAACTTTTGCAGCTGGTGTTTAACTGGTTGGGATTGCGGAACCGTGGGATTGAT 1200
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TTGCCATCCGCCACACAAAAATACAGCAACTGGATATGTGCAGTAGTTTTTAATTGTACA 1260
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TCAAGCCCCTTTCAGAGCGACCTGTTGTCATGATGATTATTTTTATTTCATTATCTTTTA 1320
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CGAATACGGCAGCAGTAAGATCTTAGGGTGAGAATGTAGCTATTTAAGGGAATGTGGCCA 1380
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CAAATATTAGCGAGTCAAGTAGTAACTCATTGGTCTATATGTATAGCATGGTAATTTTGT 1440
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TAACCTGTAGGCATTTTTTTTGACACTGGATTGTGTTTAATATTATTCTTTTTACCTCCT 1500
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TTCATAAAGAACTCTAACTGTCATGTGTGATGGCCTGCTGGGTGTCCACAAAACTGTGCT 1560
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 AATGATGACTTGTAAGTTGTAATTCCGTATATAATTATTTAACATGCTCAGGTAATCCCT 1620
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TGCTTTTCTTTACCATCGCAATGCAACACATGAGATGAGTAGACCTTTCTTAGTATGCAT 1680
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TAAATATGGCATGCCTCTCTGAAACATACAGGACACACAGGACTATGATGAAGTGGCACA 1740
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 AGATAAGATGGCTACATATAAGAGGGATCAGGATTCACGGCTGTATCATGTGAATTTTGG 1800
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 AGCATAAAGCTTCAGTTCGAGGCTTTGGGCCTTGTGACCTTCTCGTCTCTCCATGTCTAT 1860
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TATTTTTCTTCACACAAACCTGCGGAGCTTGATGCGTCAGGATCGAATCGCCTGTTTTGG 1920
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CTCATTCCATTCCAGCCAAAACGCTTGCGATTGGAGTAAGAATCCAAGAACCAGTGTGGC 1980
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TGCTGCCATTGGACCCTTTCCTTCTCTGGTGCCTCCCAACTTTGCTTCCAGCAGCGGTAA 2040
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TGCCGTTGCCTTTGCCACACACAACGAACACCGGCGCGCACACATGTATATATGCTTCTG 2100
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CCCATGCTCGGATCTGCACAGAAAACACCATATTTCTTCCTTGTGATCACGAGCTAACCT 2160
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TGCATCTCTCATTGTCTTTGGCAAGGATCGATGGGCCAGGCTGCTGCCAAGGCGAAGCAA 2220
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GGTGGCGATCAGGCAGAGAACAAGACTGGCAAGGACGAGAAGGTTGCGAAACCTAAGGAT 2280
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GCCAAGGATCTCACCGACTTCATGGAAAAAAACTACGACTCGATCAAGGACGTGACAAGC 2340
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TTCGAAGATTTCTACCATGCCTTCTACGAGCTCATCGAAAAATTCTGTGAGGAACGTGGG 2400
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 CAATTGCAGTACAGGATACCGGAAAAAGCGGAACTTCAGAAGCAGTACGAGAGGGTGAAC 2460
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 AAGAGCCCCCAGAAGGGGCAGAACCTGAGCAGGAAGCAGTTCATGGAGCTGGCCGGGCAG 2520
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 GTGATCAAGGTGAACAGCTTCACCTTCGGCAAGGCCACCATGGACGTGCTGGTCGTCCTC 2580
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TTCGGCGCCCCCGTCTGCGCCCTCCTCGCCAAGAGGGTCGTCCCGGGCCTCAAGTCCTTC 2640
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 TCCGACGACGTCGTCATCCCCGTCGCCACCTCCGGCGCCGTCGTCTACCTCGCCAAGACC 2700
consensus_13091#1 ------------------------------------------------------------
consensus_13091#0 AACAAGCTGTGATCGAGGTGAATCGATC-GTTCCAGAATCATATCCAGACTATGGCTAAC 2759
consensus_13091#1 -----------TCTGAGNTGAATCGATCCGTTCCAGAATCATATCCAGACTATGGCTAAC 49
*** ********** *******************************
consensus_13091#0 AAATTATCGCGAGAATAAAGGTGAGGGAGAAAAAACGTACGTGGTGTCATGTCGTATAAA 2819
consensus_13091#1 AAATTATCGCGAGAATAAAGGTGAGGGAGAAAAAACGTACGTGGTGTCATGTCGTATAAA 109
************************************************************
consensus_13091#0 GTTTGCGTTGTGGCC-----TTGG--TTAAATTTCGCCCAAATTGTAAAGATTATTTGAG 2872
consensus_13091#1 CGNCNCNCCCNNNCCCCCCCTNNNCTNTAAATTTCGCCCAAATTGTAAAGATTATTTGAG 169
* ** * *********************************
consensus_13091#0 AGTGGATTTTTATATTCACTCT--CTTTTATATGTCTTCACTGTTCACA-CCTGTGAAAT 2929
consensus_13091#1 AGTGGATTTTTATATTCACTGCTGCTTTTATATGTCTTCACTGTTCACAGCCTGTGAAAT 229
******************** ************************* **********
consensus_13091#0 CTAGGAGAAATCTGTATAATAATATTCGTAAAATCTGATATGTGCACATGCACGAATCCT 2989
consensus_13091#1 CTAGGAGAAATCTGTATAATAATATTCGTAAAATCTGATATGTGCACATGCACGAATCCT 289
************************************************************
consensus_13091#0 AGTTCGTCCCCAAAAAAAAAAAAA 3013
consensus_13091#1 AGTTCGTCCCCAAAAAAAAA---- 309
********************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||