These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 985 fasta sequence [TTTTTTTCATTATAGTTAATTATTTTTTTTACATTGGAGTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATATATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATC-GATCACCT-GATCATCACTTTAATCCATATATCGATAGATATACATATGTA-TAGATGGTGTTGATGACCT-GCAGAT-GGATGAGATGATAGAT-GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC-GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGGACGCCGGGGTCCTTGACGGCGCAGCTGCCGGCGACGAGCACCGAGTTGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCTCTCCTCCTCCTCGTCGTCGTCCTCGTCGCCGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCGGCGAGGTGATCGTTGAGCTTGGAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAATTATCAAACTCGATGGATAGCACAAATGCATCGATCATGGTTAGTTCGTATATTTATACTANANAGAGANAGGCATGGNAATAGAAGAGGTTTGAAGTGATGATGTGATTCTATTATTCGAGACTNTGGCT] [-] EMBL AU031881 [TTTTTTTCATTATAGTTAATTAACATTTTTACATTGGAGTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATATATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATCGGATCACCTGGATCATCACTTTAATCCATATATCGATAGATATACATATGTATTAGATGGTGTTGATGACCTGGCAGATGGGATGAGATGATAGATGGAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTCGGTAGTCGCGGATCTCGT ] [+] EMBL CF298337 [ TTTTTTTTACATTGGAGTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATATATCGAGCTGTTGATCATGCGATGGGATGTATGTATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATC GATCACCT GATCATCACTTTAATCCATATATCGATAGATATACATATGTA TAGATGGTGTTGATGACCT GCAGAT GGATGAGATGATAGAT GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGGACGCCGG ] [-] EMBL AU173161 [ TTTTTTTT TNGGAGNAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACANCAACCAGAACAAATACATANGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATATATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATC GATCACCT GATCATCACTTTAATCCATATATCGATAGATATACATATGTA TAGATGGTGTTGATGACCT GCAGAT GGATGANATGATAGAT GAGTTGCAGGCTTATTCGc ] [-] EMBL AK058807 [ CATGTATAAATATAGATCACAACTACAACAACCAGAACAAATATATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATATATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATC GATCACCT GATCATCACTTTAATCCATATATCGATAGATATACATATGTA TAGATGGTGTTGATGACCT GCAGAT GGATGAGATGATAGAT GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGGACGCCGGGGTCCTTGACGGCGCAGCTGCCGGCGACGAGCACCGAGTTGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCTCTCCTCCTCCTCGTCGTCGTCCTCGTCGCCGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCGGCGAGGTGATCGTTGAGCTTGGAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAATTATCAAACTCGAT ] [-] EMBL CA999779 [ CATATATATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATC GATCACCT GATCATCACTTTAATCCATATATCGATAGATATACATATGTA TAGATGGTGTTGATGACCT GCAGAT GGATGAGATGATAGAT GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGG ] [-] EMBL C73652 [ ATANCGATTAATCTCTTATGTAGATTTATGATGCAGGTGATCATGATC GATCACCT GATCATCACTTTAATCCATATATCGATAGATATACATATGTA TAGATGNTGTTGATGACCT GCAGAT GGATGAGATGATAGAT GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGGACGCCGGGGTCCTTGACGGCGCAGCTGCCGGCGACGAGCACCGAGTTGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCTCTCCTCCTCCTCGTCGTCGTCCTCGT CNGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCNG NACCTCCATGGTGGCGCCGTTGTTCTCCC ] [-] EMBL CF298338 [ TTAATCCATATATCGATAGATATACATATGTA TAGATGGTGTTGATGACCT GCAGAT GGATGAGATGATAGAT GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGGACGCCGGGGTCCTTGACGGCGCAGCTGCCGGCGACGAGCACCGAGTTGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCTCTCCTCCTCCTCGTCGTCGTCCTCGTCGCCGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCG ] [-] EMBL CF325327 [ GCTGCCGGCGACGAGCACCGAGTTGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCTCTCCTCCTCCTCGTCGTCGTCCTCGTCGCCGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCGGCGAGGTGATCGTTGAGCTTGGAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAA ] [-] EMBL AU173160 [ CGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCGGCGAGGTGATCGTTNAGCTTGNAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTANCCNCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAATTATCAAACTCGATGGATAGCACAAATGCATCGATCATGGTTAGTTCGTATATTTATACTANANAGAGANAGGCATGGNAATAGAAGAGGTTTGAAGTGATGATGTGATTCTATTATTCGAGACTNTGGCT] [-] EMBL OSR23731A [ GCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCGGCGAGNTGATCGTTGAGCTTGGAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAATTA ] [-] EMBL CF324781 [ CGAGGTGATCGTTGAGCTTGGAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAA ] consensusID : consensus_13096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence [TTTTTTTTTTTTTGAGACAAATCAACAAATATTATAGTTAACTAACATTTTTACATTGGAGTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTGGGGGGGGGGGCCGGGCCCCAATTCCCCCTTAAAGGGGGGGAATTACCCCCCCCCCCGGGGCGGGGTTTTAAAAAGGGGGGGGGGGGAAAACCCGGGGGGTACCCAAATTAAATGGCTTGGAAAAAAACCCCCTTTTCCCAGGGGGGGGAAAAAAAAAAAGGGCCCCCCCGATCCCCCTTTCCAAAAATTGGCCCCCCCTAAGGGGAAAGGGGACCCCCCCTTTTAGGGGGCATTAAAGGGGGGGGGGGGGGGGGGGTACCCCCAAGGGAACCGTTAACTTTGGCAGGGCCCTAACCCCCGGCCCTTTGGGTTTTTTCCCTTTCTTTTTTCCCCAGTTGGGCGGGTTTCCCCGGAAAAGTTATAAAAGGGGGCTCCTTTTAGGGGTCCCCAAATAAAGGGGTTACGGGGACCCCACCCCCAAAAAACTGATAGGGGGGGGGGGGGTCCCCNNAAGGGGGGCCATCCCCCTGAAAAAAGGGGTTTTTCCCTTTGGGCAGGGGGGGGCCCCAGTTTTTTTTAATGGGGACTCCTTGGCCCAAACGGGGAAA] [+] EMBL CA758196 [TTTTTTTTTTTTTGAGACAAATCAACAAATATTATAGTTAACTAACATTTTTACATTGGAGTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTGGGGGGGGGGGCCGGGCCCCAATTCCCCCTTAAAGGGGGGGAATTACCCCCCCCCCCGGGGCGGGGTTTTAAAAAGGGGGGGGGGGGAAAACCCGGGGGGTACCCAAATTAAATGGCTTGGAAAAAAACCCCCTTTTCCCAGGGGGGGGAAAAAAAAAAAGGGCCCCCCCGATCCCCCTTTCCAAAAATTGGCCCCCCCTAAGGGGAAAGGGGACCCCCCCTTTTAGGGGGCATTAAAGGGGGGGGGGGGGGGGGGGTACCCCCAAGGGAACCGTTAACTTTGGCAGGGCCCTAACCCCCGGCCCTTTGGGTTTTTTCCCTTTCTTTTTTCCCCAGTTGGGCGGGTTTCCCCGGAAAAGTTATAAAAGGGGGCTCCTTTTAGGGGTCCCCAAATAAAGGGGTTACGGGGACCCCACCCCCAAAAAACTGATAGGGGGGGGGGGGGTCCCCNNAAGGGGGGCCATCCCCCTGAAAAAAGGGGTTTTTCCCTTTGGGCAGGGGGGGGCCCCAGTTTTTTTTAATGGGGACTCCTTGGCCCAAACGGGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13096#0 ----------------------TTTTTTTCATTATAGTTAATTATTTTTTTTACATTGGA 38 consensus_13096#1 TTTTTTTTTTTTTGAGACAAATCAACAAATATTATAGTTAACTAACATTTTTACATTGGA 60 *********** ** ************* consensus_13096#0 GTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAAC 98 consensus_13096#1 GTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAAC 120 ************************************************************ consensus_13096#0 ATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCT 158 consensus_13096#1 ATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCT 180 ************************************************************ consensus_13096#0 TGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATA 218 consensus_13096#1 TGTAAATTAATTAAGAAACTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 240 *************************** ** ** * * ** * * * * * consensus_13096#0 TATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGA 278 consensus_13096#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTGG 300 * * * * * * * * * * ** * * ** consensus_13096#0 TGATGCAGGT--GATCATGATCGATCACCTGATCATCACT-TTAATCCATATATCGATAG 335 consensus_13096#1 GGGGGGGGGCCGGGCCCCAATTCCCCCTTAAAGGGGGGGAATTACCCCCCCCCCCGGGGC 360 * * ** * * ** * * *** ** ** consensus_13096#0 ATATACATATGTATAGATGGTGTTGATGACCTGCAGATGGATGAGAT--GATAGATGAGT 393 consensus_13096#1 GGGGTTTTAAAAAGGGGGGGGGGGGAAAACCCGGGGGGTACCCAAATTAAATGGCTTGGA 420 ** * * ** * ** *** * * * ** ** * * * consensus_13096#0 TGCAGGCTTATTCGTCCCGGACGTCGTCGTCGTAGTCGCGGATCTCGTCGACGTGCTCGA 453 consensus_13096#1 AAAAAACCCCCTTTTCCCAGGGGGGGGAAA-AAAAAAAAGGGCCCCCCCGATCCCCCTTT 479 * * * **** * * * * ** * * *** * consensus_13096#0 CGATGACGACGTGGACGCCGGGGTCCTTGACGGCGCAGCTGCCGGCGACGAGCACCGAGT 513 consensus_13096#1 CCAAAAATTGGCCCCCCCTAAGGGG--AAAGGGGACCCCCCCTTTTAGGGGGCATTAAAG 537 * * * * * * ** * ** * * * * *** * consensus_13096#0 TGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCT----CTCCTCCTCC 569 consensus_13096#1 GGGGGGGGGGGGGGGGGGTACCCCCAAGGGAACCGTTAACTTTGGCAGGGCCCTAACCCC 597 * * * ** * * * * * * * ** * * * * ** consensus_13096#0 TCGTCGTCGTCCTCGTCGCCGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCC 629 consensus_13096#1 CGGCCCTTTGGGTTTTTTCCCTTTCTTTTTTCCCCAGTTGGGCGGGTTTCCCCGGAAAAG 657 * * * * * ** * ** * ** * ** consensus_13096#0 ACCTCCATGGTGGCGCCGTT--GTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCG 687 consensus_13096#1 TTATAAAAGGGGGCTCCTTTTAGGGGTCCCCAAATAAAGGGGTTACGGG-GACCCCACC- 715 * * ** *** ** ** * ***** * * * * * * * **** ** consensus_13096#0 GCTCCTTGGCCTCGTCGGCGCCGGCGAGGTGATCGTTGAGCTTGGAGAGGATGCTGCTCA 747 consensus_13096#1 -CCCAAAAAACTGATAGGGGGGGGGGGGGTC---------CCCNNAAGGGGGGCCATCCC 765 * * ** * ** * ** * *** * * ** ** * consensus_13096#0 CCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTG 807 consensus_13096#1 CCTGAAAAAAGGGGTTT----TTCCCTTTGGGCAGGGGGGGGCCCCAGTTTTTTTTAATG 821 *** * *** * * ** * * * * *** * ** * ** consensus_13096#0 CACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAATTATCAAACTCGA 867 consensus_13096#1 ----GGGACTCCT-TGGCCCAAACGGGGAAA----------------------------- 847 * ** * * ** ** * * consensus_13096#0 TGGATAGCACAAATGCATCGATCATGGTTAGTTCGTATATTTATACTANANAGAGANAGG 927 consensus_13096#1 ------------------------------------------------------------ consensus_13096#0 CATGGNAATAGAAGAGGTTTGAAGTGATGATGTGATTCTATTATTCGAGACTNTGGCT 985 consensus_13096#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||