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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 985 fasta sequence
[TTTTTTTCATTATAGTTAATTATTTTTTTTACATTGGAGTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATATATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATC-GATCACCT-GATCATCACTTTAATCCATATATCGATAGATATACATATGTA-TAGATGGTGTTGATGACCT-GCAGAT-GGATGAGATGATAGAT-GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC-GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGGACGCCGGGGTCCTTGACGGCGCAGCTGCCGGCGACGAGCACCGAGTTGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCTCTCCTCCTCCTCGTCGTCGTCCTCGTCGCCGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCGGCGAGGTGATCGTTGAGCTTGGAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAATTATCAAACTCGATGGATAGCACAAATGCATCGATCATGGTTAGTTCGTATATTTATACTANANAGAGANAGGCATGGNAATAGAAGAGGTTTGAAGTGATGATGTGATTCTATTATTCGAGACTNTGGCT]
[-] EMBL AU031881 [TTTTTTTCATTATAGTTAATTAACATTTTTACATTGGAGTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATATATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATCGGATCACCTGGATCATCACTTTAATCCATATATCGATAGATATACATATGTATTAGATGGTGTTGATGACCTGGCAGATGGGATGAGATGATAGATGGAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTCGGTAGTCGCGGATCTCGT ]
[+] EMBL CF298337 [ TTTTTTTTACATTGGAGTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATATATCGAGCTGTTGATCATGCGATGGGATGTATGTATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATC GATCACCT GATCATCACTTTAATCCATATATCGATAGATATACATATGTA TAGATGGTGTTGATGACCT GCAGAT GGATGAGATGATAGAT GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGGACGCCGG ]
[-] EMBL AU173161 [ TTTTTTTT TNGGAGNAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACANCAACCAGAACAAATACATANGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATATATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATC GATCACCT GATCATCACTTTAATCCATATATCGATAGATATACATATGTA TAGATGGTGTTGATGACCT GCAGAT GGATGANATGATAGAT GAGTTGCAGGCTTATTCGc ]
[-] EMBL AK058807 [ CATGTATAAATATAGATCACAACTACAACAACCAGAACAAATATATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATATATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATC GATCACCT GATCATCACTTTAATCCATATATCGATAGATATACATATGTA TAGATGGTGTTGATGACCT GCAGAT GGATGAGATGATAGAT GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGGACGCCGGGGTCCTTGACGGCGCAGCTGCCGGCGACGAGCACCGAGTTGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCTCTCCTCCTCCTCGTCGTCGTCCTCGTCGCCGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCGGCGAGGTGATCGTTGAGCTTGGAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAATTATCAAACTCGAT ]
[-] EMBL CA999779 [ CATATATATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGATGATGCAGGTGATCATGATC GATCACCT GATCATCACTTTAATCCATATATCGATAGATATACATATGTA TAGATGGTGTTGATGACCT GCAGAT GGATGAGATGATAGAT GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGG ]
[-] EMBL C73652 [ ATANCGATTAATCTCTTATGTAGATTTATGATGCAGGTGATCATGATC GATCACCT GATCATCACTTTAATCCATATATCGATAGATATACATATGTA TAGATGNTGTTGATGACCT GCAGAT GGATGAGATGATAGAT GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGGACGCCGGGGTCCTTGACGGCGCAGCTGCCGGCGACGAGCACCGAGTTGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCTCTCCTCCTCCTCGTCGTCGTCCTCGT CNGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCNG NACCTCCATGGTGGCGCCGTTGTTCTCCC ]
[-] EMBL CF298338 [ TTAATCCATATATCGATAGATATACATATGTA TAGATGGTGTTGATGACCT GCAGAT GGATGAGATGATAGAT GAGTTGCAGGCTTATTCGTCCCGGACGTCGTCGTC GTAGTCGCGGATCTCGTCGACGTGCTCGACGATGACGACGTGGACGCCGGGGTCCTTGACGGCGCAGCTGCCGGCGACGAGCACCGAGTTGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCTCTCCTCCTCCTCGTCGTCGTCCTCGTCGCCGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCG ]
[-] EMBL CF325327 [ GCTGCCGGCGACGAGCACCGAGTTGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCTCTCCTCCTCCTCGTCGTCGTCCTCGTCGCCGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCGGCGAGGTGATCGTTGAGCTTGGAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAA ]
[-] EMBL AU173160 [ CGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCGGCGAGGTGATCGTTNAGCTTGNAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTANCCNCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAATTATCAAACTCGATGGATAGCACAAATGCATCGATCATGGTTAGTTCGTATATTTATACTANANAGAGANAGGCATGGNAATAGAAGAGGTTTGAAGTGATGATGTGATTCTATTATTCGAGACTNTGGCT]
[-] EMBL OSR23731A [ GCCGGCCACCTCCATGGTGGCGCCGTTGTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCGGCTCCTTGGCCTCGTCGGCGCCGGCGAGNTGATCGTTGAGCTTGGAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAATTA ]
[-] EMBL CF324781 [ CGAGGTGATCGTTGAGCTTGGAGAGGATGCTGCTCACCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTGCACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAA ]
consensusID : consensus_13096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence
[TTTTTTTTTTTTTGAGACAAATCAACAAATATTATAGTTAACTAACATTTTTACATTGGAGTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTGGGGGGGGGGGCCGGGCCCCAATTCCCCCTTAAAGGGGGGGAATTACCCCCCCCCCCGGGGCGGGGTTTTAAAAAGGGGGGGGGGGGAAAACCCGGGGGGTACCCAAATTAAATGGCTTGGAAAAAAACCCCCTTTTCCCAGGGGGGGGAAAAAAAAAAAGGGCCCCCCCGATCCCCCTTTCCAAAAATTGGCCCCCCCTAAGGGGAAAGGGGACCCCCCCTTTTAGGGGGCATTAAAGGGGGGGGGGGGGGGGGGGTACCCCCAAGGGAACCGTTAACTTTGGCAGGGCCCTAACCCCCGGCCCTTTGGGTTTTTTCCCTTTCTTTTTTCCCCAGTTGGGCGGGTTTCCCCGGAAAAGTTATAAAAGGGGGCTCCTTTTAGGGGTCCCCAAATAAAGGGGTTACGGGGACCCCACCCCCAAAAAACTGATAGGGGGGGGGGGGGTCCCCNNAAGGGGGGCCATCCCCCTGAAAAAAGGGGTTTTTCCCTTTGGGCAGGGGGGGGCCCCAGTTTTTTTTAATGGGGACTCCTTGGCCCAAACGGGGAAA]
[+] EMBL CA758196 [TTTTTTTTTTTTTGAGACAAATCAACAAATATTATAGTTAACTAACATTTTTACATTGGAGTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAACATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCTTGTAAATTAATTAAGAAACTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTGGGGGGGGGGGCCGGGCCCCAATTCCCCCTTAAAGGGGGGGAATTACCCCCCCCCCCGGGGCGGGGTTTTAAAAAGGGGGGGGGGGGAAAACCCGGGGGGTACCCAAATTAAATGGCTTGGAAAAAAACCCCCTTTTCCCAGGGGGGGGAAAAAAAAAAAGGGCCCCCCCGATCCCCCTTTCCAAAAATTGGCCCCCCCTAAGGGGAAAGGGGACCCCCCCTTTTAGGGGGCATTAAAGGGGGGGGGGGGGGGGGGGTACCCCCAAGGGAACCGTTAACTTTGGCAGGGCCCTAACCCCCGGCCCTTTGGGTTTTTTCCCTTTCTTTTTTCCCCAGTTGGGCGGGTTTCCCCGGAAAAGTTATAAAAGGGGGCTCCTTTTAGGGGTCCCCAAATAAAGGGGTTACGGGGACCCCACCCCCAAAAAACTGATAGGGGGGGGGGGGGTCCCCNNAAGGGGGGCCATCCCCCTGAAAAAAGGGGTTTTTCCCTTTGGGCAGGGGGGGGCCCCAGTTTTTTTTAATGGGGACTCCTTGGCCCAAACGGGGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13096#0 ----------------------TTTTTTTCATTATAGTTAATTATTTTTTTTACATTGGA 38
consensus_13096#1 TTTTTTTTTTTTTGAGACAAATCAACAAATATTATAGTTAACTAACATTTTTACATTGGA 60
*********** ** *************
consensus_13096#0 GTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAAC 98
consensus_13096#1 GTAAACAAGATTTTATTGGAAGAAAACACATACAAACCAACTTACATATATAGAAGCAAC 120
************************************************************
consensus_13096#0 ATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCT 158
consensus_13096#1 ATGTATAAATATAGATCACAACTACAACAACCAGAACAAATACATATGACTACCAAATCT 180
************************************************************
consensus_13096#0 TGTAAATTAATTAAGAAACTTAACAAAGGAAGCCGAAGCCACGTGCACAACATACATATA 218
consensus_13096#1 TGTAAATTAATTAAGAAACTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 240
*************************** ** ** * * ** * * * * *
consensus_13096#0 TATCGAGCTGTTGATCATGCGATGGGATGTATATATCGATTAATTTCTGATGTAGATTGA 278
consensus_13096#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTGG 300
* * * * * * * * * * ** * * **
consensus_13096#0 TGATGCAGGT--GATCATGATCGATCACCTGATCATCACT-TTAATCCATATATCGATAG 335
consensus_13096#1 GGGGGGGGGCCGGGCCCCAATTCCCCCTTAAAGGGGGGGAATTACCCCCCCCCCCGGGGC 360
* * ** * * ** * * *** ** **
consensus_13096#0 ATATACATATGTATAGATGGTGTTGATGACCTGCAGATGGATGAGAT--GATAGATGAGT 393
consensus_13096#1 GGGGTTTTAAAAAGGGGGGGGGGGGAAAACCCGGGGGGTACCCAAATTAAATGGCTTGGA 420
** * * ** * ** *** * * * ** ** * * *
consensus_13096#0 TGCAGGCTTATTCGTCCCGGACGTCGTCGTCGTAGTCGCGGATCTCGTCGACGTGCTCGA 453
consensus_13096#1 AAAAAACCCCCTTTTCCCAGGGGGGGGAAA-AAAAAAAAGGGCCCCCCCGATCCCCCTTT 479
* * * **** * * * * ** * * *** *
consensus_13096#0 CGATGACGACGTGGACGCCGGGGTCCTTGACGGCGCAGCTGCCGGCGACGAGCACCGAGT 513
consensus_13096#1 CCAAAAATTGGCCCCCCCTAAGGGG--AAAGGGGACCCCCCCTTTTAGGGGGCATTAAAG 537
* * * * * * ** * ** * * * * *** *
consensus_13096#0 TGTTCAGAGCCTGGTAGTTGCTGTTGGTGTAGGCACTCACCACGCT----CTCCTCCTCC 569
consensus_13096#1 GGGGGGGGGGGGGGGGGGTACCCCCAAGGGAACCGTTAACTTTGGCAGGGCCCTAACCCC 597
* * * ** * * * * * * * ** * * * * **
consensus_13096#0 TCGTCGTCGTCCTCGTCGCCGCCGGCCTCCACCACGACGAGGTCCTCCACGTCGCCGGCC 629
consensus_13096#1 CGGCCCTTTGGGTTTTTTCCCTTTCTTTTTTCCCCAGTTGGGCGGGTTTCCCCGGAAAAG 657
* * * * * ** * ** * ** * **
consensus_13096#0 ACCTCCATGGTGGCGCCGTT--GTTCTCCCCGGCCAGCGTGATGATGCTTGTCCCCGCCG 687
consensus_13096#1 TTATAAAAGGGGGCTCCTTTTAGGGGTCCCCAAATAAAGGGGTTACGGG-GACCCCACC- 715
* * ** *** ** ** * ***** * * * * * * * **** **
consensus_13096#0 GCTCCTTGGCCTCGTCGGCGCCGGCGAGGTGATCGTTGAGCTTGGAGAGGATGCTGCTCA 747
consensus_13096#1 -CCCAAAAAACTGATAGGGGGGGGGGGGGTC---------CCCNNAAGGGGGGCCATCCC 765
* * ** * ** * ** * *** * * ** ** *
consensus_13096#0 CCTCGGAGGCCACGTTGACGGTGTCGTTGGAGGAATTAGCCGCCATGATCGATTAAACTG 807
consensus_13096#1 CCTGAAAAAAGGGGTTT----TTCCCTTTGGGCAGGGGGGGGCCCCAGTTTTTTTTAATG 821
*** * *** * * ** * * * * *** * ** * **
consensus_13096#0 CACTGAAGCTAGTATAGCTTAATTGCTAATGAAACAATAAGAAGTAATTATCAAACTCGA 867
consensus_13096#1 ----GGGACTCCT-TGGCCCAAACGGGGAAA----------------------------- 847
* ** * * ** ** * *
consensus_13096#0 TGGATAGCACAAATGCATCGATCATGGTTAGTTCGTATATTTATACTANANAGAGANAGG 927
consensus_13096#1 ------------------------------------------------------------
consensus_13096#0 CATGGNAATAGAAGAGGTTTGAAGTGATGATGTGATTCTATTATTCGAGACTNTGGCT 985
consensus_13096#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||