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Oryza sativa
cluster # 13100 cluster # 13100       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13100#0 length = 729 sequences # 2  
consensus_13100#1 length = 376 sequences # 2  
consensus_13100#2 length = 344 sequences # 5  
consensus_13100#3 length = 264 sequences # 3  

consensusID : consensus_13100#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 729
fasta sequence
                              [ACTCTCGAGTTTTTTTTTTTTTTTTTTTCNCCGGTTTAATCGNCTNTTTATTATTCNCGTAATGTAAATTAACCACACACGTACACAATTCCAAACACCAARMMAGCCGGTACAAANCCCACAACAWACACATGGGCTGCAAATGCCAAMGKWAWTACTTGGAAAATCGAGGTAATTAACGGCGNGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACSCCGTCRAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCACGACACGAARAARATCTTGCTGCGCGGSGCCTCGCCGCCCTCGCCGGCGGCCGCCGTGGCCGTGGCGTCGCTGACGGTGAARTCGTGGGTCGTACACGGCGTARCGGCAGCCGTCGGCGGGGAGGYKGGCGGTGAGCTCGTCGAARCCSGCGTCGCGTGGGCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAGTTGGATTCTGCAATGGTCGATNAGAAGT]

[+] EMBL BP432967             [ACTCTCGAGTTTTTTTTTTTTTTTTTTTCNCCGGTTTAATCGNCTNTTTATTATTCNCGTAATGTAAATTAACCACACACGTACACAATTCCAAACACCAARMMAGCCGGTACAAANCCCACAACAWACACATGGGCTGCAAATGCCAAMGKWAWTACTTGGAAAATCGAGGTAATTAACGGCGNGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACSCCGTCRAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCACGACACGAARAARATCTTGCTGCGCGGSGCCTCGCCGCCCTCGCCGGCGGCCGCCGTGGCCGTGGCGTCGCTGACGGTGAARTCGTGGGTCGTACACGGCGTARCGGCAGCCGTCGGCGGGGAGGYKGGCGGTGAGCTCGTCGAARCCSGCGTCGCGTGGGCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCG                                                                                                                                                      ]
[+] EMBL AU070876             [                                                                                                                                                                                                                                                                                                                                                                                                                  GGCCGTGGCGTCGCTGACGGTGAAGTCGT GGTCGTACACGGCGTA CGGCAGCCGTCGGCGGGGAGGCTGGCGGTGAGCTCGTCGAAGCCGGCGTCGCGTGGGCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAGTTGGATTCTGCAATGGTCGATNAGAAGT]


>consensus_13100#0 ACTCTCGAGTTTTTTTTTTTTTTTTTTTCNCCGGTTTAATCGNCTNTTTATTATTCNCGT AATGTAAATTAACCACACACGTACACAATTCCAAACACCAARMMAGCCGGTACAAANCCC ACAACAWACACATGGGCTGCAAATGCCAAMGKWAWTACTTGGAAAATCGAGGTAATTAAC GGCGNGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAAGGGTGAGCTCGCTGGGGTC GGTGGCCTGCAGGTCGATCTGGACSCCGTCRAGCTCCTTCTTGAACCCTTCGTTGGAGCT CGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCACGACACGAARAARAT CTTGCTGCGCGGSGCCTCGCCGCCCTCGCCGGCGGCCGCCGTGGCCGTGGCGTCGCTGAC GGTGAARTCGTGGGTCGTACACGGCGTARCGGCAGCCGTCGGCGGGGAGGYKGGCGGTGA GCTCGTCGAARCCSGCGTCGCGTGGGCCCACCCTGTCGACCACCACCTGCCGCATCGCGT CGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCG CCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGT GTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAGTTGGATTCTGCAATGGTCG ATNAGAAGT



consensusID : consensus_13100#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 376
fasta sequence
                              [TTTTTTTTTTTTACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAG]

[-] EMBL CF312991             [TTTTTTTTTTTTACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAG]
[-] EMBL CF312836             [      TTTTTCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAgtttctact                                                                                                                                                                          ]


>consensus_13100#1 TTTTTTTTTTTTACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACA CACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAA TGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTG GTCCTTGAGCACGTCGACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCT GTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCAC ACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGT CTGAAGAAACAATTAG



consensusID : consensus_13100#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 344
fasta sequence
                              [TTTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACGCCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCAC]

[+] EMBL CF310858             [TTTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGC                                                                                                                                                                                                            ]
[-] EMBL CF310859             [ TTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCA                                                                                                                                                                                                           ]
[-] EMBL CF311643             [ TTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCA                                                                                                                                                                                                           ]
[-] EMBL CF311349             [                             tttttACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACGCCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCAC]
[+] EMBL CF311350             [                            ttttttACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACGCCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCA ]


>consensus_13100#2 TTTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATT CGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAAC CACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACG GCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGGGTGAGCTCGCTGGGGTCGG TGGCCTGCAGGTCGATCTGGACGCCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCG CGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCAC



consensusID : consensus_13100#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 264
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCAC------TTTCTACTCC-TCAGTCCTTG]

[-] EMBL CA754422             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTA                                                ]
[+] EMBL CF312837             [                                                         TTTTTTCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGTTTCTACTCCTTCAGTCCT  ]
[-] EMBL CF308179             [                                                                   ttTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCAC      TTTCTACTCC TCAGTCCATG]


>consensus_13100#3 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTNACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACA CAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACG TAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGA GCACTTTCTACTCCTCAGTCCTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13100#1      ----------------------------------------------------TTTTTTTT 8
consensus_13100#3      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_13100#0      ---------------------------------ACTCTCGAGTTTTTTTTTTTTTTTTTT 27
consensus_13100#2      ------------------------------TTTTTTTTTAAGGTGCAAGCGCGATCGACC 30
                                                                             *     

consensus_13100#1      TTTTACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACA 68
consensus_13100#3      TTTNACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACA 120
consensus_13100#0      --TCNCCGGTTTAATCGNCTNTTTATTATTCNCGTAATGTAAATTAACCACACACGTACA 85
consensus_13100#2      GATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACA 90
                         *  ************ ** ********** ****************************

consensus_13100#1      CAAT-CCAAACACCAAGCAAGCCG-TACAAACCACA---CATACACATGGGCTGCAA-TG 122
consensus_13100#3      CAAT-CCAAACACCAAGCAAGCCG-TACAAACCACA---CATACACATGGGCTGCAA-TG 174
consensus_13100#0      CAATTCCAAACACCAARMMAGCCGGTACAAANCCCACAACAWACACATGGGCTGCAAATG 145
consensus_13100#2      CAAT-CCAAACACCAAGCAAGCCG-TACAAACCACA---CATACACATGGGCTGCAA-TG 144
                       **** ***********   ***** ****** * **   ** *************** **

consensus_13100#1      CCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGT 182
consensus_13100#3      CCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGT 234
consensus_13100#0      CCAAMGKWAWTACTTGGAAAATCGAGGTAATTAACGGCGNGATTAATTAGGAGGTGTGGT 205
consensus_13100#2      CCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGT 204
                       **** *  * ***************************** ********************

consensus_13100#1      CCTTGAGCACGTCGACCACCTGCCGCATCGCG-TCGTCGATCTTGAACACCACGAACCTG 241
consensus_13100#3      CCTTGAGCACTTTCTACTCCTCAGTCCTTG------------------------------ 264
consensus_13100#0      CCTTGAGCACGTCGAAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACS 265
consensus_13100#2      CCTTGAGCACGTCGA-GGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACG 263
                       ********** *             *   *                              

consensus_13100#1      TGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACA 301
consensus_13100#3      ------------------------------------------------------------
consensus_13100#0      CCGTCRAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACG 325
consensus_13100#2      CCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACG 323
                                                                                   

consensus_13100#1      CCCGACGTCGCGTTCG-CCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGT 360
consensus_13100#3      ------------------------------------------------------------
consensus_13100#0      TCCGCCGCCGCCGGCGACCACGACACGAARAARATCTTGCTGCGCGGSGCCTCGCCGCCC 385
consensus_13100#2      TCCGCCGCCGCCGGCGACCAC--------------------------------------- 344
                                                                                   

consensus_13100#1      CTGAAGAAACAATTAG-------------------------------------------- 376
consensus_13100#3      ------------------------------------------------------------
consensus_13100#0      TCGCCGGCGGCCGCCGTGGCCGTGGCGTCGCTGACGGTGAARTCGTGGGTCGTACACGGC 445
consensus_13100#2      ------------------------------------------------------------
                                                                                   

consensus_13100#1      ------------------------------------------------------------
consensus_13100#3      ------------------------------------------------------------
consensus_13100#0      GTARCGGCAGCCGTCGGCGGGGAGGYKGGCGGTGAGCTCGTCGAARCCSGCGTCGCGTGG 505
consensus_13100#2      ------------------------------------------------------------
                                                                                   

consensus_13100#1      ------------------------------------------------------------
consensus_13100#3      ------------------------------------------------------------
consensus_13100#0      GCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCT 565
consensus_13100#2      ------------------------------------------------------------
                                                                                   

consensus_13100#1      ------------------------------------------------------------
consensus_13100#3      ------------------------------------------------------------
consensus_13100#0      GTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCAC 625
consensus_13100#2      ------------------------------------------------------------
                                                                                   

consensus_13100#1      ------------------------------------------------------------
consensus_13100#3      ------------------------------------------------------------
consensus_13100#0      ACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGT 685
consensus_13100#2      ------------------------------------------------------------
                                                                                   

consensus_13100#1      --------------------------------------------
consensus_13100#3      --------------------------------------------
consensus_13100#0      CTGAAGAAACAATTAGTTGGATTCTGCAATGGTCGATNAGAAGT 729
consensus_13100#2      --------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)