These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 729 fasta sequence [ACTCTCGAGTTTTTTTTTTTTTTTTTTTCNCCGGTTTAATCGNCTNTTTATTATTCNCGTAATGTAAATTAACCACACACGTACACAATTCCAAACACCAARMMAGCCGGTACAAANCCCACAACAWACACATGGGCTGCAAATGCCAAMGKWAWTACTTGGAAAATCGAGGTAATTAACGGCGNGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACSCCGTCRAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCACGACACGAARAARATCTTGCTGCGCGGSGCCTCGCCGCCCTCGCCGGCGGCCGCCGTGGCCGTGGCGTCGCTGACGGTGAARTCGTGGGTCGTACACGGCGTARCGGCAGCCGTCGGCGGGGAGGYKGGCGGTGAGCTCGTCGAARCCSGCGTCGCGTGGGCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAGTTGGATTCTGCAATGGTCGATNAGAAGT] [+] EMBL BP432967 [ACTCTCGAGTTTTTTTTTTTTTTTTTTTCNCCGGTTTAATCGNCTNTTTATTATTCNCGTAATGTAAATTAACCACACACGTACACAATTCCAAACACCAARMMAGCCGGTACAAANCCCACAACAWACACATGGGCTGCAAATGCCAAMGKWAWTACTTGGAAAATCGAGGTAATTAACGGCGNGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACSCCGTCRAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCACGACACGAARAARATCTTGCTGCGCGGSGCCTCGCCGCCCTCGCCGGCGGCCGCCGTGGCCGTGGCGTCGCTGACGGTGAARTCGTGGGTCGTACACGGCGTARCGGCAGCCGTCGGCGGGGAGGYKGGCGGTGAGCTCGTCGAARCCSGCGTCGCGTGGGCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCG ] [+] EMBL AU070876 [ GGCCGTGGCGTCGCTGACGGTGAAGTCGT GGTCGTACACGGCGTA CGGCAGCCGTCGGCGGGGAGGCTGGCGGTGAGCTCGTCGAAGCCGGCGTCGCGTGGGCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAGTTGGATTCTGCAATGGTCGATNAGAAGT] consensusID : consensus_13100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 376 fasta sequence [TTTTTTTTTTTTACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAG] [-] EMBL CF312991 [TTTTTTTTTTTTACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAG] [-] EMBL CF312836 [ TTTTTCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAgtttctact ] consensusID : consensus_13100#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 344 fasta sequence [TTTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACGCCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCAC] [+] EMBL CF310858 [TTTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGC ] [-] EMBL CF310859 [ TTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCA ] [-] EMBL CF311643 [ TTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCA ] [-] EMBL CF311349 [ tttttACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACGCCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCAC] [+] EMBL CF311350 [ ttttttACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACGCCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCA ] consensusID : consensus_13100#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 264 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCAC------TTTCTACTCC-TCAGTCCTTG] [-] EMBL CA754422 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTA ] [+] EMBL CF312837 [ TTTTTTCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGTTTCTACTCCTTCAGTCCT ] [-] EMBL CF308179 [ ttTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCAC TTTCTACTCC TCAGTCCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13100#1 ----------------------------------------------------TTTTTTTT 8 consensus_13100#3 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_13100#0 ---------------------------------ACTCTCGAGTTTTTTTTTTTTTTTTTT 27 consensus_13100#2 ------------------------------TTTTTTTTTAAGGTGCAAGCGCGATCGACC 30 * consensus_13100#1 TTTTACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACA 68 consensus_13100#3 TTTNACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACA 120 consensus_13100#0 --TCNCCGGTTTAATCGNCTNTTTATTATTCNCGTAATGTAAATTAACCACACACGTACA 85 consensus_13100#2 GATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACA 90 * ************ ** ********** **************************** consensus_13100#1 CAAT-CCAAACACCAAGCAAGCCG-TACAAACCACA---CATACACATGGGCTGCAA-TG 122 consensus_13100#3 CAAT-CCAAACACCAAGCAAGCCG-TACAAACCACA---CATACACATGGGCTGCAA-TG 174 consensus_13100#0 CAATTCCAAACACCAARMMAGCCGGTACAAANCCCACAACAWACACATGGGCTGCAAATG 145 consensus_13100#2 CAAT-CCAAACACCAAGCAAGCCG-TACAAACCACA---CATACACATGGGCTGCAA-TG 144 **** *********** ***** ****** * ** ** *************** ** consensus_13100#1 CCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGT 182 consensus_13100#3 CCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGT 234 consensus_13100#0 CCAAMGKWAWTACTTGGAAAATCGAGGTAATTAACGGCGNGATTAATTAGGAGGTGTGGT 205 consensus_13100#2 CCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGT 204 **** * * ***************************** ******************** consensus_13100#1 CCTTGAGCACGTCGACCACCTGCCGCATCGCG-TCGTCGATCTTGAACACCACGAACCTG 241 consensus_13100#3 CCTTGAGCACTTTCTACTCCTCAGTCCTTG------------------------------ 264 consensus_13100#0 CCTTGAGCACGTCGAAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACS 265 consensus_13100#2 CCTTGAGCACGTCGA-GGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACG 263 ********** * * * consensus_13100#1 TGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACA 301 consensus_13100#3 ------------------------------------------------------------ consensus_13100#0 CCGTCRAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACG 325 consensus_13100#2 CCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACG 323 consensus_13100#1 CCCGACGTCGCGTTCG-CCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGT 360 consensus_13100#3 ------------------------------------------------------------ consensus_13100#0 TCCGCCGCCGCCGGCGACCACGACACGAARAARATCTTGCTGCGCGGSGCCTCGCCGCCC 385 consensus_13100#2 TCCGCCGCCGCCGGCGACCAC--------------------------------------- 344 consensus_13100#1 CTGAAGAAACAATTAG-------------------------------------------- 376 consensus_13100#3 ------------------------------------------------------------ consensus_13100#0 TCGCCGGCGGCCGCCGTGGCCGTGGCGTCGCTGACGGTGAARTCGTGGGTCGTACACGGC 445 consensus_13100#2 ------------------------------------------------------------ consensus_13100#1 ------------------------------------------------------------ consensus_13100#3 ------------------------------------------------------------ consensus_13100#0 GTARCGGCAGCCGTCGGCGGGGAGGYKGGCGGTGAGCTCGTCGAARCCSGCGTCGCGTGG 505 consensus_13100#2 ------------------------------------------------------------ consensus_13100#1 ------------------------------------------------------------ consensus_13100#3 ------------------------------------------------------------ consensus_13100#0 GCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCT 565 consensus_13100#2 ------------------------------------------------------------ consensus_13100#1 ------------------------------------------------------------ consensus_13100#3 ------------------------------------------------------------ consensus_13100#0 GTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCAC 625 consensus_13100#2 ------------------------------------------------------------ consensus_13100#1 ------------------------------------------------------------ consensus_13100#3 ------------------------------------------------------------ consensus_13100#0 ACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGT 685 consensus_13100#2 ------------------------------------------------------------ consensus_13100#1 -------------------------------------------- consensus_13100#3 -------------------------------------------- consensus_13100#0 CTGAAGAAACAATTAGTTGGATTCTGCAATGGTCGATNAGAAGT 729 consensus_13100#2 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||