Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13121 cluster # 13121       Sequences # 12       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13121#0 length = 960 sequences # 8  
consensus_13121#1 length = 614 sequences # 1  
consensus_13121#2 length = 470 sequences # 1  
consensus_13121#3 length = 355 sequences # 1  
consensus_13121#4 length = 301 sequences # 1  

consensusID : consensus_13121#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 960
fasta sequence
                              [TCTGTCACCCTCCCGAGCTCCCCACTCGTCTCCACCTCCCCGCGATCCCCTCCTCCACTCCCCCCCGCGCGCTCCCATCAAGAGGAGAGAGAGTGAGAGGAGGTAGCTCTGCCACCGGAGCGGCTGCGGGGAGCGGCGGCAGTGCTCCTCCTTCCGGGGAGATCGGGGTCGCTGGTTGGATCCAAGAAACGGGGAGGGGGATTTGCTGGCGGGGAGGAGCCGAGTAGGGAGATGAGCCGGGGGCGGTCGCCGGAGCCGCTGGATTTCTTCATCTGGACAGTCGAGGATGTTGGGTTATGGCTTGAAGAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGAGGAAAACGGTGTCAATGGAGAGTATC-TTGAAAGCCTGTC-GATGTTTACTACAGAACAGATTCTGCGGTTTATCAGGAGGTGCCATATGAAATGGGGAGATTTCATTACA-TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAG-CAAGAA-GTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC-GTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA-TATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAAAAAGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAAAAA]

[+] EMBL AK073732             [TCTGTCACCCTCCCGAGCTCCCCACTCGTCTCCACCTCCCCGCGATCCCCTCCTCCACTCCCCCCCGCGCGCTCCCATCAAGAGGAGAGAGAGTGAGAGGAGGTAGCTCTGCCACCGGAGCGGCTGCGGGGAGCGGCGGCAGTGCTCCTCCTTCCGGGGAGATCGGGGTCGCTGGTTGGATCCAAGAAACGGGGAGGGGGATTTGCTGGCGGGGAGGAGCCGAGTAGGGAGATGAGCCGGGGGCGGTCGCCGGAGCCGCTGGATTTCTTCATCTGGACAGTCGAGGATGTTGGGTTATGGCTTGAAGAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGAGGAAAACGGTGTCAATGGAGAGTATC TTGAAAGCCTGTC GATGTTTACTACAGAACAGATTCTGCGGTTTATCAGGAGGTGCCATATGAAATGGGGAGATTTCATTACA TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAG CAAGAA GTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC GTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTG                                                      ]
[+] EMBL AU077888             [                                                CCTCCTCCACTCCCCCCCGCGCGCTCCCATCAAGAGGAGAGAGAGTGAGAGGAGGTAGCTCTGCCACCGGAGCGGCTGCGGGGAGCGGCGGCAGTGCTCCTCCTTCCGGGGAGATCGGGGTCGCTGGTTGGATCCAAGAAACGGGGAGGGGGATTTGCTGGCGGGGAGGAGCCGAGTAGGGAGATGAGCCGGGGGCGGTCGCCGGAGCCGCTGGATTTCTTCATCTGGACAGTCGAGGATGTTGGATTATGGCTTGAAGAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGAGGAAAACGGTGTCAATGGAGAGTATC TTGAAAGCCTGTC GATGTTTACTACAGAACAGATTCTGCGGTTTATCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BI810561             [                                                                                                                                                                                                                                                                                                       TAT GCTTGAAGAGAT AACCTTGCCA CTACAGCCAAGTTTGTGAGG AAACGGTTTCAATGGAGA TATCTTTGAAACCCCGTCAGATG TTACTACAG ACAGATTCT C GTTTATCAGGAGGT CCATATGAAATGGGGAGATTTCATTACC TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAG CAAGAA GTACGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC GTGAGGGCGGCCAAGCGGAACC GCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGAC AAC AGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAAAAA                                       ]
[+] EMBL AU077889             [                                                                                                                                                                                                                                                                                                                  GAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGNGGAAAACGGTGTCAATGGNGAGTATC TTGAAAGCCTGTC GATGTTTACTACAGAACAGATTCTGCGGTTTATCNGGAGGTGCCATATGAAATGGGGAGATTTCATTACA TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGTCTGCCTGAAAGGGGAG CAAGAA GTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC GTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAAACCNACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAAAAA                                       ]
[+] EMBL BI810648             [                                                                                                                                                                                                                                                                                                                                                                     GGAGAGTATC TTGAAAGCCTGTC GATGTTTACTACAGAACAGATTCTCCGGTTTATCAGGAGGTGCCATATGAAATGGGGAGATTTCATTACACTTGTGC AAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAGCCAAGAACGTACGCAGGCCATGGTGGGC CCGTCATGCCTATCGGTGGTGTTCAGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGAC AACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAAAAA                                       ]
[+] EMBL CF326827             [                                                                                                                                                                                                                                                                                                                                                                                                                                 GGAGGTGCCATATGAAATGGGGAGATTTCATTACA TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAG CAAGAA GTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC GTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGANTATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAGTCTGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAAAA ]
[-] EMBL CF326828             [                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGGTGCCATATGAAATGGGGAGATTTCATTACA TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAG CAAGAA GTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC GTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTTGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTTTACCCCGCCTTCCAGCTCCTTTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTTTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTTTGCTGCTTGCAAGTCAGTTTGAGCTTGTTCTAGTAGGTATTTTTATCTTG GAAAAAAA]
[+] EMBL BI810692             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAAGGGGAG CAAGAA GTAC CA GCCATGGTGGGC CCGTCATGCCTATCGGTGGTGTTC GTGA GGCGGCCAA CGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGAC AACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCCAAAAa                                      ]


>consensus_13121#0 TCTGTCACCCTCCCGAGCTCCCCACTCGTCTCCACCTCCCCGCGATCCCCTCCTCCACTC CCCCCCGCGCGCTCCCATCAAGAGGAGAGAGAGTGAGAGGAGGTAGCTCTGCCACCGGAG CGGCTGCGGGGAGCGGCGGCAGTGCTCCTCCTTCCGGGGAGATCGGGGTCGCTGGTTGGA TCCAAGAAACGGGGAGGGGGATTTGCTGGCGGGGAGGAGCCGAGTAGGGAGATGAGCCGG GGGCGGTCGCCGGAGCCGCTGGATTTCTTCATCTGGACAGTCGAGGATGTTGGGTTATGG CTTGAAGAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGAGGAAAACGGTGTCAATGGA GAGTATCTTGAAAGCCTGTCGATGTTTACTACAGAACAGATTCTGCGGTTTATCAGGAGG TGCCATATGAAATGGGGAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTG GCCTGCCTGAAAGGGGAGCAAGAAGTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCG GTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTG GAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTT CCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAG TGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCG GTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGATATATAGGGTTTGGAATAG TAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTT CTGCTGCTTGCAAGTCAAAAAGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAAAAA



consensusID : consensus_13121#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence
                              [TCAACGGGTCCCAGCACAAAGAACAATCAGAACCCCCGCGGGCGGCGACAAGACNAGNGGACCCCCGGGCNGCAGGAANNCGGCACGAGGGAAGNNNACNACAGAACAGAANCGGCGGNNNATCAGGAGGTGCCATATGAAATGGGGAGATNNCATNACATTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAGCAAGAAGTACGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTNCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATTCCTTTTTTTTCTTGATCTGTTTTAATCATGATATATAGGGGTTGGGAATAGTAACCCTGGTGTAGACAAACCAGATACATATATTGTGCCGATGGTCCCCCTTAAAAGTTTCC]

[+] EMBL CA753514             [TCAACGGGTCCCAGCACAAAGAACAATCAGAACCCCCGCGGGCGGCGACAAGACNAGNGGACCCCCGGGCNGCAGGAANNCGGCACGAGGGAAGNNNACNACAGAACAGAANCGGCGGNNNATCAGGAGGTGCCATATGAAATGGGGAGATNNCATNACATTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAGCAAGAAGTACGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTNCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATTCCTTTTTTTTCTTGATCTGTTTTAATCATGATATATAGGGGTTGGGAATAGTAACCCTGGTGTAGACAAACCAGATACATATATTGTGCCGATGGTCCCCCTTAAAAGTTTCC]


>consensus_13121#1 TCAACGGGTCCCAGCACAAAGAACAATCAGAACCCCCGCGGGCGGCGACAAGACNAGNGG ACCCCCGGGCNGCAGGAANNCGGCACGAGGGAAGNNNACNACAGAACAGAANCGGCGGNN NATCAGGAGGTGCCATATGAAATGGGGAGATNNCATNACATTGTGCAAAGAGTTGAGGCG CATCAAAGTGGCCTGCCTGAAAGGGGAGCAAGAAGTACGCAGGCCATGGTGGGCGCCGTC ATGCCTATCGGTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTC CCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCT ACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGC TAGTNCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTA TGTTCAACCGGTCCTCTTATTCCTTTTTTTTCTTGATCTGTTTTAATCATGATATATAGG GGTTGGGAATAGTAACCCTGGTGTAGACAAACCAGATACATATATTGTGCCGATGGTCCC CCTTAAAAGTTTCC



consensusID : consensus_13121#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence
                              [GAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGAGCAAGAAGTCCGCAGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATNCGCCGTTCTACNCCGCCTTCCAGCNCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTNTNAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGGATATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAAAAAAAAAAAA]

[+] EMBL AU101560             [GAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGAGCAAGAAGTCCGCAGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATNCGCCGTTCTACNCCGCCTTCCAGCNCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTNTNAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGGATATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAAAAAAAAAAAA]


>consensus_13121#2 GAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGA GCAAGAAGTCCGCAGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTCGTGAGGGCG GCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCC ACCGCCTCAAATCTTTGCGCATNCGCCGTTCTACNCCGCCTTCCAGCNCCTCTTGGTGGA GGCGGCACTGCAACCGCACACCGTTGGTGTNTNAGTTCCCAGTGATATGAAAGGTCTTTT GCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTT TTCTTGATCTGTTTTAATCATGGATATATAGGGTTTGGAATAGTAACCTTGGTGTAGACA AACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAAAAAAAAAAAA



consensusID : consensus_13121#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence
                              [GTGATAATGAAAGGTCTTTTGCTGTGAAGAGCTAGAAGTATTGCTGGCTCTACTAATGTTCAACCTGGTGCCTCTTGATGCCTGTGTGTGTGTGTTGCTTGGATCTGTTTTGAATCATGGATAATATAGGGTTTGGAATAGTAACCTTGGTCGTAGACAAACAAGATACATATACTTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAGTCTGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAGACTTGATCCCCCTAGAGATCCTTGATCATCTGCAGANAATGCAGATGTTTTATTTGGTGTTGGTAAAAACAAAAACACTACTNCTTCCAAAAAAA]

[+] EMBL BQ907946             [GTGATAATGAAAGGTCTTTTGCTGTGAAGAGCTAGAAGTATTGCTGGCTCTACTAATGTTCAACCTGGTGCCTCTTGATGCCTGTGTGTGTGTGTTGCTTGGATCTGTTTTGAATCATGGATAATATAGGGTTTGGAATAGTAACCTTGGTCGTAGACAAACAAGATACATATACTTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAGTCTGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAGACTTGATCCCCCTAGAGATCCTTGATCATCTGCAGANAATGCAGATGTTTTATTTGGTGTTGGTAAAAACAAAAACACTACTNCTTCCAAAAAAA]


>consensus_13121#3 GTGATAATGAAAGGTCTTTTGCTGTGAAGAGCTAGAAGTATTGCTGGCTCTACTAATGTT CAACCTGGTGCCTCTTGATGCCTGTGTGTGTGTGTTGCTTGGATCTGTTTTGAATCATGG ATAATATAGGGTTTGGAATAGTAACCTTGGTCGTAGACAAACAAGATACATATACTTGTG CAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAGTCTGAGCTTGTTCTAGTAG GTATTTTTATCTTGTGAAAGACTTGATCCCCCTAGAGATCCTTGATCATCTGCAGANAAT GCAGATGTTTTATTTGGTGTTGGTAAAAACAAAAACACTACTNCTTCCAAAAAAA



consensusID : consensus_13121#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence
                              [CCTGAAAAGGGGACCAAAAGTCCCAGCCACTGGTGGGCCCCNTTATTGCCAATTCGGTGGTGTTCTTTGAGGGCGGCCATACGGTACCGGCAGTCCCGATCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCNCCTCAAATTCTTGTGCGCATTTCCNNTTTACCCCGCCTTCCAGCTCCTNTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGGGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCC]

[+] EMBL BI805909             [CCTGAAAAGGGGACCAAAAGTCCCAGCCACTGGTGGGCCCCNTTATTGCCAATTCGGTGGTGTTCTTTGAGGGCGGCCATACGGTACCGGCAGTCCCGATCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCNCCTCAAATTCTTGTGCGCATTTCCNNTTTACCCCGCCTTCCAGCTCCTNTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGGGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCC]


>consensus_13121#4 CCTGAAAAGGGGACCAAAAGTCCCAGCCACTGGTGGGCCCCNTTATTGCCAATTCGGTGG TGTTCTTTGAGGGCGGCCATACGGTACCGGCAGTCCCGATCGTCTCCCTGAAGCTGGAGC CCTAGTACCCATCCACCNCCTCAAATTCTTGTGCGCATTTCCNNTTTACCCCGCCTTCCA GCTCCTNTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGGGTGCTAGTTCCCAGTGA TATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTC C



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13121#1      ------------------------------------------------------------
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      TCTGTCACCCTCCCGAGCTCCCCACTCGTCTCCACCTCCCCGCGATCCCCTCCTCCACTC 60
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      ------------------------------------------------------------
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      CCCCCCGCGCGCTCCCATCAAGAGGAGAGAGAGTGAGAGGAGGTAGCTCTGCCACCGGAG 120
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      ------------------------------------------------------------
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      CGGCTGCGGGGAGCGGCGGCAGTGCTCCTCCTTCCGGGGAGATCGGGGTCGCTGGTTGGA 180
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      ------------------------------------------------------------
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      TCCAAGAAACGGGGAGGGGGATTTGCTGGCGGGGAGGAGCCGAGTAGGGAGATGAGCCGG 240
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      --------------------------------------------------TCAACGGGTC 10
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      GGGCGGTCGCCGGAGCCGCTGGATTTCTTCATCTGGACAGTCGAGGATGTTGGGTTATGG 300
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      CCAGCACAAAGAACAATCAGAACCCCCGCGGGCGGCGACAAGACNAGNGGACCCCCGGGC 70
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      CTTGAAGAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGAGGAAAACGGTGTCAATGGA 360
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      NGCAGGAANNCGGCACGAGGGAAGNNNACNACAGAACAGAANCGGCGGNNNATCAGGAGG 130
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      GAGTATCTTGAAAGCCTGTCGATGTTTACTACAGAACAGATTCTGCGGTTTATCAGGAGG 420
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      TGCCATATGAAATGGGGAGATNNCATNACATTGTGCAAAGAGTTGAGGCGCATCAAAGTG 190
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ----------------GAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTG 44
consensus_13121#0      TGCCATATGAAATGGGGAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTG 480
consensus_13121#3      -----------------------------GTGATAATGAAAGGTCTTTTGCTGTGAAGAG 31
                                                                                   

consensus_13121#1      GCCTGCCTGAAAGGGGAGCAAGAAGTACGCAGGCCATGGTGGGCGCCGTCATGCCTA--T 248
consensus_13121#4      -----CCTGAAAAGGGGACCAAAAGTCC-CAGCCACTGGTGGGCCCCNTTATTGCCAATT 54
consensus_13121#2      GCCTGCCTGAAA-GGGAGCAAGAAGTCCGCAGCCA-TGGTGGGCGCCGTCATGCCTA--T 100
consensus_13121#0      GCCTGCCTGAAAGGGGAGCAAGAAGTCCGCAGGCCATGGTGGGCGCCGTCATGCCTA--T 538
consensus_13121#3      CTAGAAGTATTGCTGGCTCTACTAATGTTCAACC--TGGT--GCCTCTTGATGCCTGTGT 87
                              *      **  * *  * *   **  *  ****  **  * * **  *    *

consensus_13121#1      CGGTGGTGTTCGT-GAGGGCG------GCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCC 301
consensus_13121#4      CGGTGGTGTTCTTTGAGGGCG------GCCATACGGTACCGGCAGTCCCGA-TCGTCTCC 107
consensus_13121#2      CGGTGGTGTTCGT-GAGGGCG------GCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCC 153
consensus_13121#0      CGGTGGTGTTCGT-GAGGGCG------GCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCC 591
consensus_13121#3      GTGTG-TGTTGCTTGGATCTGTTTTGAATCATGGATAATATAGGGTTTGGAATAGTAACC 146
                         *** ****  * *     *        **      *      **   ** * **  **

consensus_13121#1      CTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCAT-TCGCCGTTCT 360
consensus_13121#4      CTGAAGCTGGAGCCCTAGTACCCATCCACCNCCTCAAATTCTTGTGCGCATTTCCNNTTT 167
consensus_13121#2      CTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCAT-NCGCCGTTCT 212
consensus_13121#0      CTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCAT-TCGCCGTTCT 650
consensus_13121#3      TTGGTCGTAGACAAACAAGATACATATACTTGTGCAGATGGTTCCCC---TTAAAAGTTT 203
                        **    * **     *  *  ***  **     ** **  **   *          * *

consensus_13121#1      ACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGC 420
consensus_13121#4      ACCCCGCCTTCCAGCTCCTNTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGGGTGC 227
consensus_13121#2      ACNCCGCCTTCCAGCNCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTNT 272
consensus_13121#0      ACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGC 710
consensus_13121#3      CTGCTGCTTGCAAGTCAGTCTGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAGACT 263
                          * ** * * **    * *  *      *      * *     *    **    *   

consensus_13121#1      TAGTNCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTA 480
consensus_13121#4      TAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTA 287
consensus_13121#2      NAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTA 332
consensus_13121#0      TAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTA 770
consensus_13121#3      TGATCCCCCTAGAGATCCTTGATCATCTGCAGANAAT-GCAGATGTTTTATTTGGTGTTG 322
                          * ***   ** **    * ** * *** *  **  ***** ** *  *    *  * 

consensus_13121#1      TGTTCAACCGGTCCTCTTATTCCTTTTTTTTCTTGATCTGTTTTAATCATGATATATAGG 540
consensus_13121#4      TGTTCAACCGGTCC---------------------------------------------- 301
consensus_13121#2      TGTTCAACCGGTCCTCTTAT-CCTTTTTTTTCTTGATCTGTTTTAATCATGGATATATAG 391
consensus_13121#0      TGTTCAACCGGTCCTCTTAT-CCTTTTTTTTCTTGATCTGTTTTAATCATGATATATA-G 828
consensus_13121#3      -GTAAAAACAAAAACACTACTNCTTCCAAAAAAA-------------------------- 355
                        **  ** *                                                   

consensus_13121#1      GGTTGGGAATAGTAACCCTGGTGTAGACAAACCAGATACATATATTGTGCCGATGGTCCC 600
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      GGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCC 451
consensus_13121#0      GGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCC 888
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      CCTTAAAAGTTTCC---------------------------------------------- 614
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      CCTTAAAAAAAAAAAAAAA----------------------------------------- 470
consensus_13121#0      CCTTAAAAGTTTCTGCTGCTTGCAAGTCAAAAAGAGCTTGTTCTAGTAGGTATTTTTATC 948
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      ------------
consensus_13121#4      ------------
consensus_13121#2      ------------
consensus_13121#0      TTGTGAAAAAAA 960
consensus_13121#3      ------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)