cluster # 13121

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13121 cluster # 13121 Sequences # 12 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13121#0 length = 960 sequences # 8
consensus_13121#1 length = 614 sequences # 1

consensus_13121#2 length = 470 sequences # 1
consensus_13121#3 length = 355 sequences # 1
consensus_13121#4 length = 301 sequences # 1

consensusID : consensus_13121#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 960
fasta sequence

                              [TCTGTCACCCTCCCGAGCTCCCCACTCGTCTCCACCTCCCCGCGATCCCCTCCTCCACTCCCCCCCGCGCGCTCCCATCAAGAGGAGAGAGAGTGAGAGGAGGTAGCTCTGCCACCGGAGCGGCTGCGGGGAGCGGCGGCAGTGCTCCTCCTTCCGGGGAGATCGGGGTCGCTGGTTGGATCCAAGAAACGGGGAGGGGGATTTGCTGGCGGGGAGGAGCCGAGTAGGGAGATGAGCCGGGGGCGGTCGCCGGAGCCGCTGGATTTCTTCATCTGGACAGTCGAGGATGTTGGGTTATGGCTTGAAGAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGAGGAAAACGGTGTCAATGGAGAGTATC-TTGAAAGCCTGTC-GATGTTTACTACAGAACAGATTCTGCGGTTTATCAGGAGGTGCCATATGAAATGGGGAGATTTCATTACA-TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAG-CAAGAA-GTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC-GTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA-TATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAAAAAGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAAAAA]

[+] EMBL AK073732             [TCTGTCACCCTCCCGAGCTCCCCACTCGTCTCCACCTCCCCGCGATCCCCTCCTCCACTCCCCCCCGCGCGCTCCCATCAAGAGGAGAGAGAGTGAGAGGAGGTAGCTCTGCCACCGGAGCGGCTGCGGGGAGCGGCGGCAGTGCTCCTCCTTCCGGGGAGATCGGGGTCGCTGGTTGGATCCAAGAAACGGGGAGGGGGATTTGCTGGCGGGGAGGAGCCGAGTAGGGAGATGAGCCGGGGGCGGTCGCCGGAGCCGCTGGATTTCTTCATCTGGACAGTCGAGGATGTTGGGTTATGGCTTGAAGAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGAGGAAAACGGTGTCAATGGAGAGTATC TTGAAAGCCTGTC GATGTTTACTACAGAACAGATTCTGCGGTTTATCAGGAGGTGCCATATGAAATGGGGAGATTTCATTACA TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAG CAAGAA GTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC GTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTG                                                      ]
[+] EMBL AU077888             [                                                CCTCCTCCACTCCCCCCCGCGCGCTCCCATCAAGAGGAGAGAGAGTGAGAGGAGGTAGCTCTGCCACCGGAGCGGCTGCGGGGAGCGGCGGCAGTGCTCCTCCTTCCGGGGAGATCGGGGTCGCTGGTTGGATCCAAGAAACGGGGAGGGGGATTTGCTGGCGGGGAGGAGCCGAGTAGGGAGATGAGCCGGGGGCGGTCGCCGGAGCCGCTGGATTTCTTCATCTGGACAGTCGAGGATGTTGGATTATGGCTTGAAGAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGAGGAAAACGGTGTCAATGGAGAGTATC TTGAAAGCCTGTC GATGTTTACTACAGAACAGATTCTGCGGTTTATCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BI810561             [                                                                                                                                                                                                                                                                                                       TAT GCTTGAAGAGAT AACCTTGCCA CTACAGCCAAGTTTGTGAGG AAACGGTTTCAATGGAGA TATCTTTGAAACCCCGTCAGATG TTACTACAG ACAGATTCT C GTTTATCAGGAGGT CCATATGAAATGGGGAGATTTCATTACC TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAG CAAGAA GTACGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC GTGAGGGCGGCCAAGCGGAACC GCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGAC AAC AGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAAAAA                                       ]
[+] EMBL AU077889             [                                                                                                                                                                                                                                                                                                                  GAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGNGGAAAACGGTGTCAATGGNGAGTATC TTGAAAGCCTGTC GATGTTTACTACAGAACAGATTCTGCGGTTTATCNGGAGGTGCCATATGAAATGGGGAGATTTCATTACA TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGTCTGCCTGAAAGGGGAG CAAGAA GTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC GTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAAACCNACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAAAAA                                       ]
[+] EMBL BI810648             [                                                                                                                                                                                                                                                                                                                                                                     GGAGAGTATC TTGAAAGCCTGTC GATGTTTACTACAGAACAGATTCTCCGGTTTATCAGGAGGTGCCATATGAAATGGGGAGATTTCATTACACTTGTGC AAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAGCCAAGAACGTACGCAGGCCATGGTGGGC CCGTCATGCCTATCGGTGGTGTTCAGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGAC AACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAAAAA                                       ]
[+] EMBL CF326827             [                                                                                                                                                                                                                                                                                                                                                                                                                                 GGAGGTGCCATATGAAATGGGGAGATTTCATTACA TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAG CAAGAA GTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC GTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGANTATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAGTCTGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAAAA ]
[-] EMBL CF326828             [                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGGTGCCATATGAAATGGGGAGATTTCATTACA TTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAG CAAGAA GTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTC GTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTTGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTTTACCCCGCCTTCCAGCTCCTTTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTTTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTTTGCTGCTTGCAAGTCAGTTTGAGCTTGTTCTAGTAGGTATTTTTATCTTG GAAAAAAA]
[+] EMBL BI810692             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAAGGGGAG CAAGAA GTAC CA GCCATGGTGGGC CCGTCATGCCTATCGGTGGTGTTC GTGA GGCGGCCAA CGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGA TATATAGGGTTTGGAATAGTAACCTTGGTGTAGAC AACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCCAAAAa                                      ]




>consensus_13121#0
TCTGTCACCCTCCCGAGCTCCCCACTCGTCTCCACCTCCCCGCGATCCCCTCCTCCACTC
CCCCCCGCGCGCTCCCATCAAGAGGAGAGAGAGTGAGAGGAGGTAGCTCTGCCACCGGAG
CGGCTGCGGGGAGCGGCGGCAGTGCTCCTCCTTCCGGGGAGATCGGGGTCGCTGGTTGGA
TCCAAGAAACGGGGAGGGGGATTTGCTGGCGGGGAGGAGCCGAGTAGGGAGATGAGCCGG
GGGCGGTCGCCGGAGCCGCTGGATTTCTTCATCTGGACAGTCGAGGATGTTGGGTTATGG
CTTGAAGAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGAGGAAAACGGTGTCAATGGA
GAGTATCTTGAAAGCCTGTCGATGTTTACTACAGAACAGATTCTGCGGTTTATCAGGAGG
TGCCATATGAAATGGGGAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTG
GCCTGCCTGAAAGGGGAGCAAGAAGTCCGCAGGCCATGGTGGGCGCCGTCATGCCTATCG
GTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTG
GAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTT
CCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAG
TGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCG
GTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGATATATAGGGTTTGGAATAG
TAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAGTTT
CTGCTGCTTGCAAGTCAAAAAGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAAAAA

consensusID : consensus_13121#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [TCAACGGGTCCCAGCACAAAGAACAATCAGAACCCCCGCGGGCGGCGACAAGACNAGNGGACCCCCGGGCNGCAGGAANNCGGCACGAGGGAAGNNNACNACAGAACAGAANCGGCGGNNNATCAGGAGGTGCCATATGAAATGGGGAGATNNCATNACATTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAGCAAGAAGTACGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTNCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATTCCTTTTTTTTCTTGATCTGTTTTAATCATGATATATAGGGGTTGGGAATAGTAACCCTGGTGTAGACAAACCAGATACATATATTGTGCCGATGGTCCCCCTTAAAAGTTTCC]

[+] EMBL CA753514             [TCAACGGGTCCCAGCACAAAGAACAATCAGAACCCCCGCGGGCGGCGACAAGACNAGNGGACCCCCGGGCNGCAGGAANNCGGCACGAGGGAAGNNNACNACAGAACAGAANCGGCGGNNNATCAGGAGGTGCCATATGAAATGGGGAGATNNCATNACATTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGGAGCAAGAAGTACGCAGGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCTACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTNCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATTCCTTTTTTTTCTTGATCTGTTTTAATCATGATATATAGGGGTTGGGAATAGTAACCCTGGTGTAGACAAACCAGATACATATATTGTGCCGATGGTCCCCCTTAAAAGTTTCC]




>consensus_13121#1
TCAACGGGTCCCAGCACAAAGAACAATCAGAACCCCCGCGGGCGGCGACAAGACNAGNGG
ACCCCCGGGCNGCAGGAANNCGGCACGAGGGAAGNNNACNACAGAACAGAANCGGCGGNN
NATCAGGAGGTGCCATATGAAATGGGGAGATNNCATNACATTGTGCAAAGAGTTGAGGCG
CATCAAAGTGGCCTGCCTGAAAGGGGAGCAAGAAGTACGCAGGCCATGGTGGGCGCCGTC
ATGCCTATCGGTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTC
CCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATTCGCCGTTCT
ACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGC
TAGTNCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTA
TGTTCAACCGGTCCTCTTATTCCTTTTTTTTCTTGATCTGTTTTAATCATGATATATAGG
GGTTGGGAATAGTAACCCTGGTGTAGACAAACCAGATACATATATTGTGCCGATGGTCCC
CCTTAAAAGTTTCC

consensusID : consensus_13121#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [GAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGAGCAAGAAGTCCGCAGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATNCGCCGTTCTACNCCGCCTTCCAGCNCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTNTNAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGGATATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAAAAAAAAAAAA]

[+] EMBL AU101560             [GAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGAGCAAGAAGTCCGCAGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTCGTGAGGGCGGCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCATNCGCCGTTCTACNCCGCCTTCCAGCNCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTNTNAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTAATCATGGATATATAGGGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAAAAAAAAAAAA]




>consensus_13121#2
GAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTGGCCTGCCTGAAAGGGA
GCAAGAAGTCCGCAGCCATGGTGGGCGCCGTCATGCCTATCGGTGGTGTTCGTGAGGGCG
GCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCC
ACCGCCTCAAATCTTTGCGCATNCGCCGTTCTACNCCGCCTTCCAGCNCCTCTTGGTGGA
GGCGGCACTGCAACCGCACACCGTTGGTGTNTNAGTTCCCAGTGATATGAAAGGTCTTTT
GCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTT
TTCTTGATCTGTTTTAATCATGGATATATAGGGTTTGGAATAGTAACCTTGGTGTAGACA
AACAAGATACATATATTGTGCAGATGGTTCCCCTTAAAAAAAAAAAAAAA

consensusID : consensus_13121#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence

                              [GTGATAATGAAAGGTCTTTTGCTGTGAAGAGCTAGAAGTATTGCTGGCTCTACTAATGTTCAACCTGGTGCCTCTTGATGCCTGTGTGTGTGTGTTGCTTGGATCTGTTTTGAATCATGGATAATATAGGGTTTGGAATAGTAACCTTGGTCGTAGACAAACAAGATACATATACTTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAGTCTGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAGACTTGATCCCCCTAGAGATCCTTGATCATCTGCAGANAATGCAGATGTTTTATTTGGTGTTGGTAAAAACAAAAACACTACTNCTTCCAAAAAAA]

[+] EMBL BQ907946             [GTGATAATGAAAGGTCTTTTGCTGTGAAGAGCTAGAAGTATTGCTGGCTCTACTAATGTTCAACCTGGTGCCTCTTGATGCCTGTGTGTGTGTGTTGCTTGGATCTGTTTTGAATCATGGATAATATAGGGTTTGGAATAGTAACCTTGGTCGTAGACAAACAAGATACATATACTTGTGCAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAGTCTGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAGACTTGATCCCCCTAGAGATCCTTGATCATCTGCAGANAATGCAGATGTTTTATTTGGTGTTGGTAAAAACAAAAACACTACTNCTTCCAAAAAAA]




>consensus_13121#3
GTGATAATGAAAGGTCTTTTGCTGTGAAGAGCTAGAAGTATTGCTGGCTCTACTAATGTT
CAACCTGGTGCCTCTTGATGCCTGTGTGTGTGTGTTGCTTGGATCTGTTTTGAATCATGG
ATAATATAGGGTTTGGAATAGTAACCTTGGTCGTAGACAAACAAGATACATATACTTGTG
CAGATGGTTCCCCTTAAAAGTTTCTGCTGCTTGCAAGTCAGTCTGAGCTTGTTCTAGTAG
GTATTTTTATCTTGTGAAAGACTTGATCCCCCTAGAGATCCTTGATCATCTGCAGANAAT
GCAGATGTTTTATTTGGTGTTGGTAAAAACAAAAACACTACTNCTTCCAAAAAAA

consensusID : consensus_13121#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [CCTGAAAAGGGGACCAAAAGTCCCAGCCACTGGTGGGCCCCNTTATTGCCAATTCGGTGGTGTTCTTTGAGGGCGGCCATACGGTACCGGCAGTCCCGATCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCNCCTCAAATTCTTGTGCGCATTTCCNNTTTACCCCGCCTTCCAGCTCCTNTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGGGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCC]

[+] EMBL BI805909             [CCTGAAAAGGGGACCAAAAGTCCCAGCCACTGGTGGGCCCCNTTATTGCCAATTCGGTGGTGTTCTTTGAGGGCGGCCATACGGTACCGGCAGTCCCGATCGTCTCCCTGAAGCTGGAGCCCTAGTACCCATCCACCNCCTCAAATTCTTGTGCGCATTTCCNNTTTACCCCGCCTTCCAGCTCCTNTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGGGTGCTAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCC]




>consensus_13121#4
CCTGAAAAGGGGACCAAAAGTCCCAGCCACTGGTGGGCCCCNTTATTGCCAATTCGGTGG
TGTTCTTTGAGGGCGGCCATACGGTACCGGCAGTCCCGATCGTCTCCCTGAAGCTGGAGC
CCTAGTACCCATCCACCNCCTCAAATTCTTGTGCGCATTTCCNNTTTACCCCGCCTTCCA
GCTCCTNTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGGGTGCTAGTTCCCAGTGA
TATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTC
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13121#1      ------------------------------------------------------------
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      TCTGTCACCCTCCCGAGCTCCCCACTCGTCTCCACCTCCCCGCGATCCCCTCCTCCACTC 60
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      ------------------------------------------------------------
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      CCCCCCGCGCGCTCCCATCAAGAGGAGAGAGAGTGAGAGGAGGTAGCTCTGCCACCGGAG 120
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      ------------------------------------------------------------
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      CGGCTGCGGGGAGCGGCGGCAGTGCTCCTCCTTCCGGGGAGATCGGGGTCGCTGGTTGGA 180
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      ------------------------------------------------------------
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      TCCAAGAAACGGGGAGGGGGATTTGCTGGCGGGGAGGAGCCGAGTAGGGAGATGAGCCGG 240
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      --------------------------------------------------TCAACGGGTC 10
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      GGGCGGTCGCCGGAGCCGCTGGATTTCTTCATCTGGACAGTCGAGGATGTTGGGTTATGG 300
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      CCAGCACAAAGAACAATCAGAACCCCCGCGGGCGGCGACAAGACNAGNGGACCCCCGGGC 70
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      CTTGAAGAGATAAACCTTGGCAGCTACAGGCAAGTTTTTGAGGAAAACGGTGTCAATGGA 360
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      NGCAGGAANNCGGCACGAGGGAAGNNNACNACAGAACAGAANCGGCGGNNNATCAGGAGG 130
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ------------------------------------------------------------
consensus_13121#0      GAGTATCTTGAAAGCCTGTCGATGTTTACTACAGAACAGATTCTGCGGTTTATCAGGAGG 420
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      TGCCATATGAAATGGGGAGATNNCATNACATTGTGCAAAGAGTTGAGGCGCATCAAAGTG 190
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      ----------------GAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTG 44
consensus_13121#0      TGCCATATGAAATGGGGAGATTTCATTACATTGTGCAAAGAGTTGAGGCGCATCAAAGTG 480
consensus_13121#3      -----------------------------GTGATAATGAAAGGTCTTTTGCTGTGAAGAG 31
                                                                                   

consensus_13121#1      GCCTGCCTGAAAGGGGAGCAAGAAGTACGCAGGCCATGGTGGGCGCCGTCATGCCTA--T 248
consensus_13121#4      -----CCTGAAAAGGGGACCAAAAGTCC-CAGCCACTGGTGGGCCCCNTTATTGCCAATT 54
consensus_13121#2      GCCTGCCTGAAA-GGGAGCAAGAAGTCCGCAGCCA-TGGTGGGCGCCGTCATGCCTA--T 100
consensus_13121#0      GCCTGCCTGAAAGGGGAGCAAGAAGTCCGCAGGCCATGGTGGGCGCCGTCATGCCTA--T 538
consensus_13121#3      CTAGAAGTATTGCTGGCTCTACTAATGTTCAACC--TGGT--GCCTCTTGATGCCTGTGT 87
                              *      **  * *  * *   **  *  ****  **  * * **  *    *

consensus_13121#1      CGGTGGTGTTCGT-GAGGGCG------GCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCC 301
consensus_13121#4      CGGTGGTGTTCTTTGAGGGCG------GCCATACGGTACCGGCAGTCCCGA-TCGTCTCC 107
consensus_13121#2      CGGTGGTGTTCGT-GAGGGCG------GCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCC 153
consensus_13121#0      CGGTGGTGTTCGT-GAGGGCG------GCCAAGCGGAACCGGCAGTCCCGAGTCGTCTCC 591
consensus_13121#3      GTGTG-TGTTGCTTGGATCTGTTTTGAATCATGGATAATATAGGGTTTGGAATAGTAACC 146
                         *** ****  * *     *        **      *      **   ** * **  **

consensus_13121#1      CTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCAT-TCGCCGTTCT 360
consensus_13121#4      CTGAAGCTGGAGCCCTAGTACCCATCCACCNCCTCAAATTCTTGTGCGCATTTCCNNTTT 167
consensus_13121#2      CTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCAT-NCGCCGTTCT 212
consensus_13121#0      CTGAAGCTGGAGCCCTAGTACCCATCCACCGCCTCAAATCTTTGCGCAT-TCGCCGTTCT 650
consensus_13121#3      TTGGTCGTAGACAAACAAGATACATATACTTGTGCAGATGGTTCCCC---TTAAAAGTTT 203
                        **    * **     *  *  ***  **     ** **  **   *          * *

consensus_13121#1      ACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGC 420
consensus_13121#4      ACCCCGCCTTCCAGCTCCTNTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGGGTGC 227
consensus_13121#2      ACNCCGCCTTCCAGCNCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTNT 272
consensus_13121#0      ACCCCGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGC 710
consensus_13121#3      CTGCTGCTTGCAAGTCAGTCTGAGCTTGTTCTAGTAGGTATTTTTATCTTGTGAAAGACT 263
                          * ** * * **    * *  *      *      * *     *    **    *   

consensus_13121#1      TAGTNCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTA 480
consensus_13121#4      TAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTA 287
consensus_13121#2      NAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTA 332
consensus_13121#0      TAGTTCCCAGTGATATGAAAGGTCTTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTA 770
consensus_13121#3      TGATCCCCCTAGAGATCCTTGATCATCTGCAGANAAT-GCAGATGTTTTATTTGGTGTTG 322
                          * ***   ** **    * ** * *** *  **  ***** ** *  *    *  * 

consensus_13121#1      TGTTCAACCGGTCCTCTTATTCCTTTTTTTTCTTGATCTGTTTTAATCATGATATATAGG 540
consensus_13121#4      TGTTCAACCGGTCC---------------------------------------------- 301
consensus_13121#2      TGTTCAACCGGTCCTCTTAT-CCTTTTTTTTCTTGATCTGTTTTAATCATGGATATATAG 391
consensus_13121#0      TGTTCAACCGGTCCTCTTAT-CCTTTTTTTTCTTGATCTGTTTTAATCATGATATATA-G 828
consensus_13121#3      -GTAAAAACAAAAACACTACTNCTTCCAAAAAAA-------------------------- 355
                        **  ** *                                                   

consensus_13121#1      GGTTGGGAATAGTAACCCTGGTGTAGACAAACCAGATACATATATTGTGCCGATGGTCCC 600
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      GGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCC 451
consensus_13121#0      GGTTTGGAATAGTAACCTTGGTGTAGACAAACAAGATACATATATTGTGCAGATGGTTCC 888
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      CCTTAAAAGTTTCC---------------------------------------------- 614
consensus_13121#4      ------------------------------------------------------------
consensus_13121#2      CCTTAAAAAAAAAAAAAAA----------------------------------------- 470
consensus_13121#0      CCTTAAAAGTTTCTGCTGCTTGCAAGTCAAAAAGAGCTTGTTCTAGTAGGTATTTTTATC 948
consensus_13121#3      ------------------------------------------------------------
                                                                                   

consensus_13121#1      ------------
consensus_13121#4      ------------
consensus_13121#2      ------------
consensus_13121#0      TTGTGAAAAAAA 960
consensus_13121#3      ------------