These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 700 fasta sequence [TCCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTTCGCGCGGCC-CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAAAAAGGGTGTTCTACTTTTAAAAAAAA] [+] EMBL CF340534 [TCCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTNTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAAAAA ] [+] EMBL CF339499 [ CCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTA ] [+] EMBL CF340448 [ TGACATGGATGAAGGAGTAGAAACTCTCCCATCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAG ] [+] EMBL CF339921 [ GACATGGATGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTC ] [+] EMBL CF339230 [ GACATGGATGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATG ] [+] EMBL CF338392 [ TGAAGGAGTAGAAACTCTCCCTTCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGT ] [+] EMBL CF340443 [ TGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAA ] [+] EMBL CF340682 [ TGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAG ] [+] EMBL AK058482 [ ctctctctCTCTCCCAGCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCGAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGC ] [+] EMBL CF321422 [ TCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGC ] [+] EMBL CB000277 [ CGCCGCCACCGTCCTGCCCGGAATGGAGAAGTCCTAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAATCAGGGTGTTCTACTTTTAAAAAAAA] consensusID : consensus_13136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [ACGAGCCGCCCACTGTCACCCCATCTCCCTTTGAAGAACCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAAATGTTCATTATATCCATTCCTTCTTTGCCACCAAATTCAAGCCTCCATGTTTTGATGTTCTGAAAAACGAAAATGTACCTTTCCATTTAACCTGGGGTTTCCTTGGCAAAAAATAAACTTGGGTTCCCATGGCTTGGTGGGACCTTTTTTTAATTTTTTAAGCCCCAAAACCCCATCCTCTCTCTTTTTCCTCTTCCACTTTTTTTCACAATTCCTGCCGTCTACGCGGGGACCTA] [+] EMBL AA754149 [ACGAGCCGCCCACTGTCACCCCATCTCCCTTTGAAGAACCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAAATGTTCATTATATCCATTCCTTCTTTGCCACCAAATTCAAGCCTCCATGTTTTGATGTTCTGAAAAACGAAAATGTACCTTTCCATTTAACCTGGGGTTTCCTTGGCAAAAAATAAACTTGGGTTCCCATGGCTTGGTGGGACCTTTTTTTAATTTTTTAAGCCCCAAAACCCCATCCTCTCTCTTTTTCCTCTTCCACTTTTTTTCACAATTCCTGCCGTCTACGCGGGGACCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13136#0 TCCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTT 60 consensus_13136#1 ------------------------------------------------------------ consensus_13136#0 CGCGCGGCCCCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCC 120 consensus_13136#1 ------------------------------------------------------------ consensus_13136#0 GCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGT 180 consensus_13136#1 ------------------------------------------------------------ consensus_13136#0 GATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATA 240 consensus_13136#1 ------------------------------------------------------------ consensus_13136#0 GATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTA 300 consensus_13136#1 ------------------------------------------------------------ consensus_13136#0 GGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCC 360 consensus_13136#1 ------------------------------------------------------------ consensus_13136#0 CTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAG 420 consensus_13136#1 ---------------ACGAGCCGCCCACTGTCACCCCATCTCCCTTTGAAGAA-CCGCAG 44 * * ********************************* ****** consensus_13136#0 CTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGT-CAT 479 consensus_13136#1 CTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAAATGTTCAT 104 *************************************************** *** *** consensus_13136#0 TATATCCATTCCTC--TTGCCACCAAATTCAG--CCTCATGTTT-GATGTCT--GAGAGC 532 consensus_13136#1 TATATCCATTCCTTCTTTGCCACCAAATTCAAGCCTCCATGTTTTGATGTTCTGAAAAAC 164 ************* *************** * ******* ***** * * * consensus_13136#0 GAAA-TGTAGCTTTCA--TTAGCT--GGGTTTCCTTG-CAAAGAATAACTTTG---TTTC 583 consensus_13136#1 GAAAATGTACCTTTCCATTTAACCTGGGGTTTCCTTGGCAAAAAATAAACTTGGGTTCCC 224 **** **** ***** *** * *********** **** ***** *** * * consensus_13136#0 ATG-CTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGAT 642 consensus_13136#1 ATGGCTTGGTGGGACCTTTTTTTAATTTTTTAAGCC--CCAAAACCCCATCC-------T 275 *** **** * * * * **** ** ** **** * ** * * consensus_13136#0 TTCAATTTTGAATGCTCTCTTTTCCCTATGAAAAAGGGTGTTCTACTTTTAAAAAAAA 700 consensus_13136#1 CTCTCTTTTTCCTCTTCCACTTTTTTTCACAATTCCTGCCGTCTACGCGGGGACCTA- 332 ** **** * ** *** * ** * ***** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||