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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 700 fasta sequence
[TCCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTTCGCGCGGCC-CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAAAAAGGGTGTTCTACTTTTAAAAAAAA]
[+] EMBL CF340534 [TCCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTNTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAAAAA ]
[+] EMBL CF339499 [ CCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTA ]
[+] EMBL CF340448 [ TGACATGGATGAAGGAGTAGAAACTCTCCCATCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAG ]
[+] EMBL CF339921 [ GACATGGATGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTC ]
[+] EMBL CF339230 [ GACATGGATGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATG ]
[+] EMBL CF338392 [ TGAAGGAGTAGAAACTCTCCCTTCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGT ]
[+] EMBL CF340443 [ TGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAA ]
[+] EMBL CF340682 [ TGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAG ]
[+] EMBL AK058482 [ ctctctctCTCTCCCAGCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCGAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGC ]
[+] EMBL CF321422 [ TCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGC ]
[+] EMBL CB000277 [ CGCCGCCACCGTCCTGCCCGGAATGGAGAAGTCCTAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAATCAGGGTGTTCTACTTTTAAAAAAAA]
consensusID : consensus_13136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence
[ACGAGCCGCCCACTGTCACCCCATCTCCCTTTGAAGAACCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAAATGTTCATTATATCCATTCCTTCTTTGCCACCAAATTCAAGCCTCCATGTTTTGATGTTCTGAAAAACGAAAATGTACCTTTCCATTTAACCTGGGGTTTCCTTGGCAAAAAATAAACTTGGGTTCCCATGGCTTGGTGGGACCTTTTTTTAATTTTTTAAGCCCCAAAACCCCATCCTCTCTCTTTTTCCTCTTCCACTTTTTTTCACAATTCCTGCCGTCTACGCGGGGACCTA]
[+] EMBL AA754149 [ACGAGCCGCCCACTGTCACCCCATCTCCCTTTGAAGAACCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAAATGTTCATTATATCCATTCCTTCTTTGCCACCAAATTCAAGCCTCCATGTTTTGATGTTCTGAAAAACGAAAATGTACCTTTCCATTTAACCTGGGGTTTCCTTGGCAAAAAATAAACTTGGGTTCCCATGGCTTGGTGGGACCTTTTTTTAATTTTTTAAGCCCCAAAACCCCATCCTCTCTCTTTTTCCTCTTCCACTTTTTTTCACAATTCCTGCCGTCTACGCGGGGACCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13136#0 TCCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTT 60
consensus_13136#1 ------------------------------------------------------------
consensus_13136#0 CGCGCGGCCCCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCC 120
consensus_13136#1 ------------------------------------------------------------
consensus_13136#0 GCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGT 180
consensus_13136#1 ------------------------------------------------------------
consensus_13136#0 GATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATA 240
consensus_13136#1 ------------------------------------------------------------
consensus_13136#0 GATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTA 300
consensus_13136#1 ------------------------------------------------------------
consensus_13136#0 GGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCC 360
consensus_13136#1 ------------------------------------------------------------
consensus_13136#0 CTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAG 420
consensus_13136#1 ---------------ACGAGCCGCCCACTGTCACCCCATCTCCCTTTGAAGAA-CCGCAG 44
* * ********************************* ******
consensus_13136#0 CTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGT-CAT 479
consensus_13136#1 CTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAAATGTTCAT 104
*************************************************** *** ***
consensus_13136#0 TATATCCATTCCTC--TTGCCACCAAATTCAG--CCTCATGTTT-GATGTCT--GAGAGC 532
consensus_13136#1 TATATCCATTCCTTCTTTGCCACCAAATTCAAGCCTCCATGTTTTGATGTTCTGAAAAAC 164
************* *************** * ******* ***** * * *
consensus_13136#0 GAAA-TGTAGCTTTCA--TTAGCT--GGGTTTCCTTG-CAAAGAATAACTTTG---TTTC 583
consensus_13136#1 GAAAATGTACCTTTCCATTTAACCTGGGGTTTCCTTGGCAAAAAATAAACTTGGGTTCCC 224
**** **** ***** *** * *********** **** ***** *** * *
consensus_13136#0 ATG-CTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGAT 642
consensus_13136#1 ATGGCTTGGTGGGACCTTTTTTTAATTTTTTAAGCC--CCAAAACCCCATCC-------T 275
*** **** * * * * **** ** ** **** * ** * *
consensus_13136#0 TTCAATTTTGAATGCTCTCTTTTCCCTATGAAAAAGGGTGTTCTACTTTTAAAAAAAA 700
consensus_13136#1 CTCTCTTTTTCCTCTTCCACTTTTTTTCACAATTCCTGCCGTCTACGCGGGGACCTA- 332
** **** * ** *** * ** * ***** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||