Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13136 cluster # 13136       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13136#0 length = 700 sequences # 11  
consensus_13136#1 length = 332 sequences # 1  

consensusID : consensus_13136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 700
fasta sequence
                              [TCCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTTCGCGCGGCC-CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAAAAAGGGTGTTCTACTTTTAAAAAAAA]

[+] EMBL CF340534             [TCCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTNTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAAAAA                       ]
[+] EMBL CF339499             [ CCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTA                              ]
[+] EMBL CF340448             [                      TGACATGGATGAAGGAGTAGAAACTCTCCCATCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAG                                                                                                                                                                           ]
[+] EMBL CF339921             [                       GACATGGATGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTC                                  ]
[+] EMBL CF339230             [                       GACATGGATGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATG                                                                                                  ]
[+] EMBL CF338392             [                               TGAAGGAGTAGAAACTCTCCCTTCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGT                                                                                                                                                                 ]
[+] EMBL CF340443             [                               TGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCC CCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAA                          ]
[+] EMBL CF340682             [                               TGAAGGAGTAGAAACTCT CCAGCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAG                                                                                                                                                                           ]
[+] EMBL AK058482             [                                     ctctctctCTCTCCCAGCTGGTTCGCGCGGCCACCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCGAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGC                                                                                        ]
[+] EMBL CF321422             [                                                                                    TCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCCGCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGC                                           ]
[+] EMBL CB000277             [                                                                                                                     CGCCGCCACCGTCCTGCCCGGAATGGAGAAGTCCTAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAATCAGGGTGTTCTACTTTTAAAAAAAA]


>consensus_13136#0 TCCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTT CGCGCGGCCCCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCC GCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGT GATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATA GATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTA GGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCC CTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAG CTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGTCATT ATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTA GCTTTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATA TGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCT CTTTTCCCTATGAAAAAGGGTGTTCTACTTTTAAAAAAAA



consensusID : consensus_13136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence
                              [ACGAGCCGCCCACTGTCACCCCATCTCCCTTTGAAGAACCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAAATGTTCATTATATCCATTCCTTCTTTGCCACCAAATTCAAGCCTCCATGTTTTGATGTTCTGAAAAACGAAAATGTACCTTTCCATTTAACCTGGGGTTTCCTTGGCAAAAAATAAACTTGGGTTCCCATGGCTTGGTGGGACCTTTTTTTAATTTTTTAAGCCCCAAAACCCCATCCTCTCTCTTTTTCCTCTTCCACTTTTTTTCACAATTCCTGCCGTCTACGCGGGGACCTA]

[+] EMBL AA754149             [ACGAGCCGCCCACTGTCACCCCATCTCCCTTTGAAGAACCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAAATGTTCATTATATCCATTCCTTCTTTGCCACCAAATTCAAGCCTCCATGTTTTGATGTTCTGAAAAACGAAAATGTACCTTTCCATTTAACCTGGGGTTTCCTTGGCAAAAAATAAACTTGGGTTCCCATGGCTTGGTGGGACCTTTTTTTAATTTTTTAAGCCCCAAAACCCCATCCTCTCTCTTTTTCCTCTTCCACTTTTTTTCACAATTCCTGCCGTCTACGCGGGGACCTA]


>consensus_13136#1 ACGAGCCGCCCACTGTCACCCCATCTCCCTTTGAAGAACCGCAGCTGAGTGCTACGTTCT CAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAAATGTTCATTATATCCATTCCTTCT TTGCCACCAAATTCAAGCCTCCATGTTTTGATGTTCTGAAAAACGAAAATGTACCTTTCC ATTTAACCTGGGGTTTCCTTGGCAAAAAATAAACTTGGGTTCCCATGGCTTGGTGGGACC TTTTTTTAATTTTTTAAGCCCCAAAACCCCATCCTCTCTCTTTTTCCTCTTCCACTTTTT TTCACAATTCCTGCCGTCTACGCGGGGACCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13136#0      TCCGACTGGAGCACGAGGACACTGACATGGATGAAGGAGTAGAAACTCTCCCAGCTGGTT 60
consensus_13136#1      ------------------------------------------------------------
                                                                                   

consensus_13136#0      CGCGCGGCCCCAAACACATCGCCTCGACTCCCCCCACCCCCACCTCCAGCGATCTCCGCC 120
consensus_13136#1      ------------------------------------------------------------
                                                                                   

consensus_13136#0      GCCACCGTCCTGCCCGGAATGGAGAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGT 180
consensus_13136#1      ------------------------------------------------------------
                                                                                   

consensus_13136#0      GATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACTCATCCTTCAACAACATA 240
consensus_13136#1      ------------------------------------------------------------
                                                                                   

consensus_13136#0      GATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTA 300
consensus_13136#1      ------------------------------------------------------------
                                                                                   

consensus_13136#0      GGAGCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCC 360
consensus_13136#1      ------------------------------------------------------------
                                                                                   

consensus_13136#0      CTGTCGGCTCCTGTTGCAAACCGCCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAG 420
consensus_13136#1      ---------------ACGAGCCGCCCACTGTCACCCCATCTCCCTTTGAAGAA-CCGCAG 44
                                       * * ********************************* ******

consensus_13136#0      CTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAGCTGT-CAT 479
consensus_13136#1      CTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTGCCCTGGGAAATGTTCAT 104
                       ***************************************************  *** ***

consensus_13136#0      TATATCCATTCCTC--TTGCCACCAAATTCAG--CCTCATGTTT-GATGTCT--GAGAGC 532
consensus_13136#1      TATATCCATTCCTTCTTTGCCACCAAATTCAAGCCTCCATGTTTTGATGTTCTGAAAAAC 164
                       *************   ***************   *  ******* *****     * * *

consensus_13136#0      GAAA-TGTAGCTTTCA--TTAGCT--GGGTTTCCTTG-CAAAGAATAACTTTG---TTTC 583
consensus_13136#1      GAAAATGTACCTTTCCATTTAACCTGGGGTTTCCTTGGCAAAAAATAAACTTGGGTTCCC 224
                       **** **** *****   *** *   *********** **** *****  ***   *  *

consensus_13136#0      ATG-CTTGTGGACATATATGAGTAATAAGCCAAACCATCCAACGCTCCGTGTAAAAAGAT 642
consensus_13136#1      ATGGCTTGGTGGGACCTTTTTTTAATTTTTTAAGCC--CCAAAACCCCATCC-------T 275
                       *** ****  *  *  * *   ****     ** **  ****  * ** *         *

consensus_13136#0      TTCAATTTTGAATGCTCTCTTTTCCCTATGAAAAAGGGTGTTCTACTTTTAAAAAAAA 700
consensus_13136#1      CTCTCTTTTTCCTCTTCCACTTTTTTTCACAATTCCTGCCGTCTACGCGGGGACCTA- 332
                        **  ****   *  **   ***   *   **     *   *****      *   * 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)