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Oryza sativa
cluster # 13145 cluster # 13145       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13145#0 length = 1673 sequences # 9  
consensus_13145#1 length = 638 sequences # 1  
consensus_13145#2 length = 378 sequences # 1  
consensus_13145#3 length = 160 sequences # 1  

consensusID : consensus_13145#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1673
fasta sequence
                              [GTCGCCTTCTCCTCCTCTTCTTGCTGACCCCGCCTGACTGGCTTCCTTCCCCTTCCACACCTGCCGGATCGGGTGGCTGGGTTGGTTGAGGGTCCAAGAAAGAAAGATTTTGGGGGTTCGGGGGTGAACCCCCCTCCCCATGCCCCAAGTGAGGAACCAGAATCTGGGCATGGTGGCTGACACGGAGAGCTCGGGGTCACTGGGTGGCAGCTCAAATGCTGCTTCTGACAAGGCTGTTGATGGGTCTCTTGACAAAAGATCTCAGGAAAAGGCTCCAAAGAAAACTCATAAAGCTGAACGAGAGAAACTTAAGCGTGACCAGTTGAATGACCTTTTTGTTGAGCTCAGCAGTATGCTTGATCCTGAACGACAAAATAGTGGAAAGGCTACTGTGTTAGGTGATGCTGCACGAGTTCTGCGGGATCTTGTTTCTCAAGTAGAATCTCTCAGAAAGGAACAGTCCGCTCTTCTAACTGAGCGTCAATACGTTGGTTCAGAGAATAATGAGCTGCAAGAAGAGAATATCATGCTCAGAGCCCAAATATTAGAACTGCATAATGAGATTTGTGCAAGGATGGGAAACAACCACCTCAATCAAAGCAATCTTGCGATGTCACAACCAGTAGCCAACAATGGCAGTAACTCAGCAACTCAACCCGTTCCACATCACATATGGGGCAATGGTCCGAATTTAGCTATGGTGCACCCAACAAACACATTATCTCCGTTGCACAATCAGCACCATCAGTCTGCTGGTGCCAGCCAGGTTTATGCGTCACGGCCTCAGGAGCTGCAGCTCTTTCCAGGGACCTCAGTATCAACAGAGCGAGAACGATCCCGAGCTGGAAGTGGAAGCACCCC-GGCTACTTCTTCA-GGCCTG-ACGGATTCTTTGCCAGGGCAGCTTCGCCTCAGCCTCCCGCAATCTTCTCA-AGAAGAAAACA-GCAGCGGCA-GCA-AGAAAGGTCG-AAAAAAGGGCTAGCCGGCCA-GTTGACA-CTTGACAGTTGCTAAAAAAGAATCGATAAATCGATACTTGGTGAATGGTGATAGTTACACACTCCTGTAAATACTGCGAAGCGCTTACTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTGCTCTGAAACTTAGATCACGTTTGACTATAGTTTTCCACTTCCAGTCCTTTTACGGATATATGTTGCCATATTACAGAGTTGTTTACCAGGAAGAGAGAAAAATGATGCAATTCGATAGCAGTGTTAACTGATGATAATTATATGATCCCTGTCACCAAGTCATGAAAATCTGATCTTGTATGTTCATGGGCAGCTTGTTTCAGCATTACAAGTTGAAGAAATATTTGTAATCTGTTGCAAACTGCATGTTTATGGCTATGAGAAATGATCAACAAGCACAGCTGAAACCATGAGACATGCAAAGTATATGCTTCTTGAATCTATGGAAATGCTAAGTCCTGCTACCGAACATCATATTGTTCATCCTAAGACAATCATCAAATCGAAAGAACACAACTCCTGATCTCCCCTATCACACTGAAAAGAATTGAACTCCCCAACAACTGAAAATAATCACACATGATCAGCACCTCTTACTCCTCTGAACCCTTCTCTTCTGAANAACTTGCTGTACTCTCCTCCTCCTCCTCGGAGCTCCTCTC]

[+] EMBL CF324607             [GTCGCCTTCTCCTCCTCTTCTTGCTGACCCCGCCTGACTGGCTTCCTTCCCCTTCCACACCTGCCGGATCGGGTGGCTGGGTTGGTTGAGGGTCCAAGAAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK068017             [ TCGCCTTCTCCTCCTCTTCTTGCTGACCCCGCCTGACTGGCTTCCTTCCCCTTCCACACCTGCCGGATCGGGTGGCTGGGTTGGTTGAGGGTCCAAGAAAGAAAGATTTTGGGGGTTCGGGGGTGAACCCCCCTCCCCATGCCCCAAGTGAGGAACCAGAATCTGGGCATGGTGGCTGACACGGAGAGCTCGGGGTCACTGGGTGGCAGCTCAAATGCTGCTTCTGACAAGGCTGTTGATGGGTCTCTTGACAAAAGATCTCAGGAAAAGGCTCCAAAGAAAACTCATAAAGCTGAACGAGAGAAACTTAAGCGTGACCAGTTGAATGACCTTTTTGTTGAGCTCAGCAGTATGCTTGATCCTGAACGACAAAATAGTGGAAAGGCTACTGTGTTAGGTGATGCTGCACGAGTTCTGCGGGATCTTGTTTCTCAAGTAGAATCTCTCAGAAAGGAACAGTCCGCTCTTCTAACTGAGCGTCAATACGTTGGTTCAGAGAATAATGAGCTGCAAGAAGAGAATATCATGCTCAGAGCCCAAATATTAGAACTGCATAATGAGATTTGTGCAAGGATGGGAAACAACCGCCTCAATCAAAGCAATCTTGCGATGTCACAACCAGTAGCCAACAATGGCAGTAACTCAGCAACTCAACCCGTTCCACATCACATATGGGGCAATGGTCCGAATTTAGCTATGGTGCACCCAACAAACACATTATCTCCGTTGCACAATCAGCACCATCAGTCTGCTGGTGCCAGCCAGGTTTATGCGTCACGGCCTCAGGAGCTGCAGCTCTTTCCAGGGACCTCAGTATCAACAGAGCGAGAACGATCCCGAGCTGGAAGTGGAAGCACCCC GGCTACTTCTTCA GGCCTG ACGGATTCTTTGCCAGGGCAGCTTCGCCTCAGCCTCCCGCAATCTTCTCA AGAAGAAAACA GCAGCGGCA GCA AGAAAGGTCG AAAAAAGGGCTAGCCGGCCA GTTGACA CTTGACAGTTGCTAAAAAAGAATCGATAAATCGATACTTGGTGAATGGTGATAGTTACACACTCCTGTAAATACTGCGAAGCGCTTACTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTGCTCTGAAACTTAGATCACGTTTGACTATAGTTTTCCACTTCCAGTCCTTTTACGGATATATGTTGCCATATTACAGAGTTGTTTACCAGGAAGAGAGAAAAATGATGCAATTCGATAGCAGTGTTAACTGATGATAATTATATGATCCCTGTCACCAAGTCATGAAAATCTGATCTTGTATGTTCATGGGCAGCTTGTTTCAGCATTACAAGTTGAAGAAATATTTGTAATCTGTTGCAAACTGCATGTTTATGGCTATG                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB652219             [ TCGCCTTCTCCTCCTCTTCTTGCTGACCCCGCCTGACTGGCTTCCTTCCCCTTCCACACCTGCCGGATCGGGTGGCTGGGTTGGTTGAGGGTCCAATAAAGAAAGATTTTGGGGGTTCCGGGGTGAACCCCCCTCCCCATGCATCAAGTGAGGAACCATAATCTGGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF278203             [ TCGCCTTCTCCTCCTCTTCTTGCTGACCCCGCCTGACTGGCTTCCTTCCCCTTCCACACCTGCCGGATCGGGTGGCTGGGTTGGTTGAGGGTCCAAGAAAGAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB652220             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGCTCTTCTAACTGAGCGTCAATACGTTGGTTCAGAGAATAATGAGCTGCAAGAAGAGAATATCATGCTCAGAGCCCAAATATTAGAACTGCATAATGAGATTTGTGCAAGGATGGGAAACAACCACCTCAATCAAAGCAATCTTGCGATGTCACAACCAGTAGCCAACAATGGCAGTAACTCAGCAACTCAACCCGTTCCACATCACATATGGGGCAATGGTCCGAATTTAGCTATGGTGCACCCAACAAACACATTATCTCCGTTGCACAATCAGCACCATCAGTCTGCTGGTGCCAGCCAGGTTTATGCGTCACGGCCTCAGGAGCTGCAGCTCTTTCCAGGGACCTCAGTATCAACAGAGCGAGAACGATCCCGAGCTGGAAGTGGAAGCACCCC GGCTACTTCTTCA GGCCTG ACGGATTCTTTGCCAGGGCAGCTTCGCCTCAGCCTCCCGCAATTTTTTCA AGAAGAAAACA GCAGCGGCA GCA AGAAAGGTCG AAAAAAGGGCTAGCCGGCCA GTTGACA CTTGACAGTTGCTAAAAAAGAATCGATAAATCGATACTTGGTGAATGGTGATAGTTACACACTCCTGTAAATACTGCGAAGCGCTTACTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTGCTCTGAAACTTAGATCACGTTTGACTATAGTTTTCCACTTCCAGTCCTTTTACGGATATATGTTGCCATATTACAGAGTTGTTTACCAGGAAGAGAGAAAAATGATGCAATTCGATAGCAGTGTTTTTTAAGGGTAATTATATGATCCCTGT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB667577             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATAATGAGATTTGTGCAAGGATGGGAAACAACCACCTCAATCAAAGCAATCTTGCGATGTCACAACCAGTAGCCAACAATGGCAGTAACTCAGCAACTCAACCCGTTCCACATCACATATGGGGCAATGGTCCGAATTTAGCTATGGTGCACCCAACAAACACATTATCTCCGTTGCACAATCAGCACCATCAGTCTGCTGGTGCCAGCCAGGTTTATGCGTCACGGCCTCAGGAGCTGCAGCTCTTTCCAGGGACCTCAGTATCAACAGAGCGAGAACGATCCCGAGCTGGAAGTGGAAGCACCCC GGCTACTTCTTCA GGCCTG ACGGATTCTTTGCCAGGGCAGCTTCGCCTCAGCCTCCCGCAATCTTCTCA AGAAGAAAACA GCAGCGGCA GCA AGAAAGGTCG AAAAAAGGGCTAGCCGGCCA GTTGACA CTTGACAGTTGCTAAAAAAGAATCGATAAATCGATACTTGGTGAATGGTGATAGTTACACACTCCTGTAAATACTGCGAAGCGCTTACTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTGCTCTGAAACTTAGATCACGTTTGACTATAGTTTTCCACTTCCAGTCCTTTTACGGATATATGTTGCCATATTACAGAGTTGTTTACCAGGAAGAGAGAAAAATGATGCAATTCGATAGCAGTGTTATCTAAGGATAATTATATGATCCCTGTC                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CF296671             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGGAAGCACCCCGGGCTACTTCTTCA GGCCTG ACGGATTCTTTGCCAGGGCAGCTTCGCCTCAGCCTCCCGCAATCTTCTCA AGAAGAAAGCA GCAGCGGCA GCA AGAAAGGTCG AAAAAAGGGCTAGCCGGCCA GTTGACA CTTGACAGTTGCTAAAAAAGAATCGATAAATCGATACTTGGTGAATGGTGATAGTTACACACTCTTGTAAATACTGCGAAGCGCTTACTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTGCTCTGAAACTTAGATCACGTTTGACTATAGTTTTCCACTTCCAGTCCTTTTACGGATATATGTTGCCATATTACAGAGTTGTTTACCAGGAAGAGAGAAAAATGATGCAATTCGATAGCAGTGTTAACTGATGATAATTATATGATCCCTGTCACCAAGTCA  AAAA                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BI812576             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccGCTACTTCTTCACGCCCTGTACGGATTCTTTGCCA GGCAGCTTCGCCTCAGCCTCCC CAATCTTCTCACAGAAGAAACCATGCAGCGCAACGCACAGAAGGGTCGAAAAAAAGGGCTACCCGACCACGTTGACACCTTGACCGTTGCTAAAAAAGAATCGATAAATCGATACTTGGTGAATGGTGATAGTTACACACTCTTGTAAATACTGCGAAGCGCTTACTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTGCTCTGAAACTTAGATCACGTTTGACTATAGTTTTCCACTTCCAGTCCTTTTACGGATATATGTTGCCATATTACAGAGTTGTTTACCCGGAAGAGAGAAAAATTATCCCATTCGATACCAGTGTTAACTGATGATAATTAaaaaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AU197564             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ttttTGAAAATCTGATCTTGTATGTTCATGGGCAGCTTGTTTCAGCATTACAAGTTGAANAAATATTTGTAATCTGTTGCAAACTGCATGTTTATGGCTATGAGAAATGATCAACAAGCACAGCTGAAACCATGAGACATGCAAAGTATATGCTTCTTGAATCTATGGAAATGCTAAGTCCTGCTACCGAACATCATATTGTTCATCCTAAGACAATCATCAAATCGAAAGAACACAACTCCTGATCTCCCCTATCACACTGAAAAGAATTGAACTCCCCAACAACTGAAAATAATCACACATGATCAGCACCTCTTACTCCTCTGAACCCTTCTCTTCTGAANAACTTGCTGTACTCTCCTCCTCCTCCTCGGAGCTCCTCTC]


>consensus_13145#0 GTCGCCTTCTCCTCCTCTTCTTGCTGACCCCGCCTGACTGGCTTCCTTCCCCTTCCACAC CTGCCGGATCGGGTGGCTGGGTTGGTTGAGGGTCCAAGAAAGAAAGATTTTGGGGGTTCG GGGGTGAACCCCCCTCCCCATGCCCCAAGTGAGGAACCAGAATCTGGGCATGGTGGCTGA CACGGAGAGCTCGGGGTCACTGGGTGGCAGCTCAAATGCTGCTTCTGACAAGGCTGTTGA TGGGTCTCTTGACAAAAGATCTCAGGAAAAGGCTCCAAAGAAAACTCATAAAGCTGAACG AGAGAAACTTAAGCGTGACCAGTTGAATGACCTTTTTGTTGAGCTCAGCAGTATGCTTGA TCCTGAACGACAAAATAGTGGAAAGGCTACTGTGTTAGGTGATGCTGCACGAGTTCTGCG GGATCTTGTTTCTCAAGTAGAATCTCTCAGAAAGGAACAGTCCGCTCTTCTAACTGAGCG TCAATACGTTGGTTCAGAGAATAATGAGCTGCAAGAAGAGAATATCATGCTCAGAGCCCA AATATTAGAACTGCATAATGAGATTTGTGCAAGGATGGGAAACAACCACCTCAATCAAAG CAATCTTGCGATGTCACAACCAGTAGCCAACAATGGCAGTAACTCAGCAACTCAACCCGT TCCACATCACATATGGGGCAATGGTCCGAATTTAGCTATGGTGCACCCAACAAACACATT ATCTCCGTTGCACAATCAGCACCATCAGTCTGCTGGTGCCAGCCAGGTTTATGCGTCACG GCCTCAGGAGCTGCAGCTCTTTCCAGGGACCTCAGTATCAACAGAGCGAGAACGATCCCG AGCTGGAAGTGGAAGCACCCCGGCTACTTCTTCAGGCCTGACGGATTCTTTGCCAGGGCA GCTTCGCCTCAGCCTCCCGCAATCTTCTCAAGAAGAAAACAGCAGCGGCAGCAAGAAAGG TCGAAAAAAGGGCTAGCCGGCCAGTTGACACTTGACAGTTGCTAAAAAAGAATCGATAAA TCGATACTTGGTGAATGGTGATAGTTACACACTCCTGTAAATACTGCGAAGCGCTTACTG ATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTGCTCTGAAAC TTAGATCACGTTTGACTATAGTTTTCCACTTCCAGTCCTTTTACGGATATATGTTGCCAT ATTACAGAGTTGTTTACCAGGAAGAGAGAAAAATGATGCAATTCGATAGCAGTGTTAACT GATGATAATTATATGATCCCTGTCACCAAGTCATGAAAATCTGATCTTGTATGTTCATGG GCAGCTTGTTTCAGCATTACAAGTTGAAGAAATATTTGTAATCTGTTGCAAACTGCATGT TTATGGCTATGAGAAATGATCAACAAGCACAGCTGAAACCATGAGACATGCAAAGTATAT GCTTCTTGAATCTATGGAAATGCTAAGTCCTGCTACCGAACATCATATTGTTCATCCTAA GACAATCATCAAATCGAAAGAACACAACTCCTGATCTCCCCTATCACACTGAAAAGAATT GAACTCCCCAACAACTGAAAATAATCACACATGATCAGCACCTCTTACTCCTCTGAACCC TTCTCTTCTGAANAACTTGCTGTACTCTCCTCCTCCTCCTCGGAGCTCCTCTC



consensusID : consensus_13145#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence
                              [TCTGCTATTACAGATCCTGAACGACAAAATAGTGGAAAGGCTACTGTGTTAGGTGATGCTGCACGAGTTCTGCGGGATCTTGTTTCTCAAGTAGAATCTCTCAGAAAGGAACAGTCCGCTCTTCTAACTGAGCGTCAATACGTGAGTTGTTTTAATGAAATTGGTGTGTTTTATAAGTAGAACCTAAGTTGCATATAGTAATGTAGTTTTCCTGTAACAGTCACACATAGGTGTACTTGCAGTTGAAATGCCTTCATGGAAACTGCAAATATGTAATTAGCAGACATTACTTTCTTATTCACCTTTTCCTCTCATATTTCCAGTGGGTTAATTCAACTGTTTGCTTGATTTATTACTTGCCGATAGTTGTTTAGGTACTATTCATCATTGCCTTTGCAGCTAATACTAAAATGAACATATTAACAGGTTGGTTCAGAGAAGAATGAGCTGCAAGAAGAGAATATCATGCTCAGAGCCCAAATATTAGAACTGCATAATGAGATTTGTGCAAGGATGGGAAACAACCACCTCAATCAAAGCAATCTTGCGATGTCACAACCAGTAGCCAACAATGGCAGTAACTCAGCAACTCAACCCGTTCCACATCACATATGGGGCAATGGTCCGAATTTAGCTAT]

[+] EMBL CF306903             [TCTGCTATTACAGATCCTGAACGACAAAATAGTGGAAAGGCTACTGTGTTAGGTGATGCTGCACGAGTTCTGCGGGATCTTGTTTCTCAAGTAGAATCTCTCAGAAAGGAACAGTCCGCTCTTCTAACTGAGCGTCAATACGTGAGTTGTTTTAATGAAATTGGTGTGTTTTATAAGTAGAACCTAAGTTGCATATAGTAATGTAGTTTTCCTGTAACAGTCACACATAGGTGTACTTGCAGTTGAAATGCCTTCATGGAAACTGCAAATATGTAATTAGCAGACATTACTTTCTTATTCACCTTTTCCTCTCATATTTCCAGTGGGTTAATTCAACTGTTTGCTTGATTTATTACTTGCCGATAGTTGTTTAGGTACTATTCATCATTGCCTTTGCAGCTAATACTAAAATGAACATATTAACAGGTTGGTTCAGAGAAGAATGAGCTGCAAGAAGAGAATATCATGCTCAGAGCCCAAATATTAGAACTGCATAATGAGATTTGTGCAAGGATGGGAAACAACCACCTCAATCAAAGCAATCTTGCGATGTCACAACCAGTAGCCAACAATGGCAGTAACTCAGCAACTCAACCCGTTCCACATCACATATGGGGCAATGGTCCGAATTTAGCTAT]


>consensus_13145#1 TCTGCTATTACAGATCCTGAACGACAAAATAGTGGAAAGGCTACTGTGTTAGGTGATGCT GCACGAGTTCTGCGGGATCTTGTTTCTCAAGTAGAATCTCTCAGAAAGGAACAGTCCGCT CTTCTAACTGAGCGTCAATACGTGAGTTGTTTTAATGAAATTGGTGTGTTTTATAAGTAG AACCTAAGTTGCATATAGTAATGTAGTTTTCCTGTAACAGTCACACATAGGTGTACTTGC AGTTGAAATGCCTTCATGGAAACTGCAAATATGTAATTAGCAGACATTACTTTCTTATTC ACCTTTTCCTCTCATATTTCCAGTGGGTTAATTCAACTGTTTGCTTGATTTATTACTTGC CGATAGTTGTTTAGGTACTATTCATCATTGCCTTTGCAGCTAATACTAAAATGAACATAT TAACAGGTTGGTTCAGAGAAGAATGAGCTGCAAGAAGAGAATATCATGCTCAGAGCCCAA ATATTAGAACTGCATAATGAGATTTGTGCAAGGATGGGAAACAACCACCTCAATCAAAGC AATCTTGCGATGTCACAACCAGTAGCCAACAATGGCAGTAACTCAGCAACTCAACCCGTT CCACATCACATATGGGGCAATGGTCCGAATTTAGCTAT



consensusID : consensus_13145#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence
                              [CCCCGGCTACTTCTTCAGGCCTGACGGATTCTTTGCCGGGCAGCTTCGCCTCAGCCTCCCGCAATCTTCTCAAGAAGAAAGCAGCAGCGGCAGCAAGAAAGGTCGAAAAAAGGGCTAGCCGGCCAGTTGACACTTGACAGTTGCTAAATTTGAATCGATAAATCGATGCTTGGTGAATGGTGATAGTTACTCACTTTGTAAATACTGCGAAGCGCTTACTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTGCTCTGAAACTTAGATCACGTTTGACTATAGTTTTCCACTTCCAGTCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF330506             [CCCCGGCTACTTCTTCAGGCCTGACGGATTCTTTGCCGGGCAGCTTCGCCTCAGCCTCCCGCAATCTTCTCAAGAAGAAAGCAGCAGCGGCAGCAAGAAAGGTCGAAAAAAGGGCTAGCCGGCCAGTTGACACTTGACAGTTGCTAAATTTGAATCGATAAATCGATGCTTGGTGAATGGTGATAGTTACTCACTTTGTAAATACTGCGAAGCGCTTACTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTGCTCTGAAACTTAGATCACGTTTGACTATAGTTTTCCACTTCCAGTCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13145#2 CCCCGGCTACTTCTTCAGGCCTGACGGATTCTTTGCCGGGCAGCTTCGCCTCAGCCTCCC GCAATCTTCTCAAGAAGAAAGCAGCAGCGGCAGCAAGAAAGGTCGAAAAAAGGGCTAGCC GGCCAGTTGACACTTGACAGTTGCTAAATTTGAATCGATAAATCGATGCTTGGTGAATGG TGATAGTTACTCACTTTGTAAATACTGCGAAGCGCTTACTGATACCTACTGTGATAGTTG CCCTCTGTTGTAATTTGTATTTGTAGTGCTTGCTCTGAAACTTAGATCACGTTTGACTAT AGTTTTCCACTTCCAGTCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAA



consensusID : consensus_13145#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 160
fasta sequence
                              [AGGGGCTAAAAAAAGAATCGATAAATTGATGCTTGGTGAATGGTTATACCCACACACTCTTGTAAATACTGCGAAGCGCTTATTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGGACCTGTAGTGCCCCTCTGAAACTTAGATCACGTTCGAG]

[-] EMBL CF310045             [AGGGGCTAAAAAAAGAATCGATAAATTGATGCTTGGTGAATGGTTATACCCACACACTCTTGTAAATACTGCGAAGCGCTTATTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTTGGACCTGTAGTGCCCCTCTGAAACTTAGATCACGTTCGAG]


>consensus_13145#3 AGGGGCTAAAAAAAGAATCGATAAATTGATGCTTGGTGAATGGTTATACCCACACACTCT TGTAAATACTGCGAAGCGCTTATTGATACCTACTGTGATAGTTGCCCTCTGTTGTAATTT GGACCTGTAGTGCCCCTCTGAAACTTAGATCACGTTCGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      GTCGCCTTCTCCTCCTCTTCTTGCTGACCCCGCCTGACTGGCTTCCTTCCCCTTCCACAC 60
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      CTGCCGGATCGGGTGGCTGGGTTGGTTGAGGGTCCAAGAAAGAAAGATTTTGGGGGTTCG 120
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      GGGGTGAACCCCCCTCCCCATGCCCCAAGTGAGGAACCAGAATCTGGGCATGGTGGCTGA 180
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      CACGGAGAGCTCGGGGTCACTGGGTGGCAGCTCAAATGCTGCTTCTGACAAGGCTGTTGA 240
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      TGGGTCTCTTGACAAAAGATCTCAGGAAAAGGCTCCAAAGAAAACTCATAAAGCTGAACG 300
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      AGAGAAACTTAAGCGTGACCAGTTGAATGACCTTTTTGTTGAGCTCAGCAGTATGCTTGA 360
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      TCCTGAACGACAAAATAGTGGAAAGGCTACTGTGTTAGGTGATGCTGCACGAGTTCTGCG 420
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      GGATCTTGTTTCTCAAGTAGAATCTCTCAGAAAGGAACAGTCCGCTCTTCTAACTGAGCG 480
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      TCAATACGTTGGTTCAGAGAATAATGAGCTGCAAGAAGAGAATATCATGCTCAGAGCCCA 540
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      AATATTAGAACTGCATAATGAGATTTGTGCAAGGATGGGAAACAACCACCTCAATCAAAG 600
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      CAATCTTGCGATGTCACAACCAGTAGCCAACAATGGCAGTAACTCAGCAACTCAACCCGT 660
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      TCCACATCACATATGGGGCAATGGTCCGAATTTAGCTATGGTGCACCCAACAAACACATT 720
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      ATCTCCGTTGCACAATCAGCACCATCAGTCTGCTGGTGCCAGCCAGGTTTATGCGTCACG 780
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      GCCTCAGGAGCTGCAGCTCTTTCCAGGGACCTCAGTATCAACAGAGCGAGAACGATCCCG 840
consensus_13145#1      ----------TCTGCTATTACAGATCCTGAACGACAAAATAGTGGAAAGGCTACTGTGTT 50
                                                                                   

consensus_13145#2      -----------------CCCCGGCTACTTCTTCAGGCCTGACGGATTCTTTGCC-GGGCA 42
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      AGCTGGAAGTGGAAGCACCCCGGCTACTTCTTCAGGCCTGACGGATTCTTTGCCAGGGCA 900
consensus_13145#1      AGGTGATGCTGCACGAGTTCTGCGGGATCTTGTTTCTCAAGTAGAATCTCTCAGAAAGGA 110
                                                                                   

consensus_13145#2      GCTTCGCCTCAGCCTCCCGCAATCTTCTCAAGAAGAAAGCAGCAGCGGCAGCAAGAAAGG 102
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      GCTTCGCCTCAGCCTCCCGCAATCTTCTCAAGAAGAAAACAGCAGCGGCAGCAAGAAAGG 960
consensus_13145#1      ACAGTCCGCTCTTCTAACTGAGCGTCAATACGTGAGTTGTTTTAATGAAATTGGTGTGTT 170
                                                                                   

consensus_13145#2      TCGAAAAAAGGGCTAGCCGGCCAGTTGACACTTGACAGTTGCTAAATTT-----GAATCG 157
consensus_13145#3      ------------------------------------AGGGGCTAAAAAAA----GAATCG 20
consensus_13145#0      TCGAAAAAAGGGCTAGCCGGCCAGTTGACACTTGACAGTTGCTAAAAAA-----GAATCG 1015
consensus_13145#1      TTATAAGTAGAACCTAAGTTGCATATAGTAATGTAGTTTTCCTGTAACAGTCACACATAG 230
                                                                **  *          ** *

consensus_13145#2      ATAAATCGATGCTTGGTGAATGGTGATAGTTACT-CACT-TTGTAAATACTGCGAAGCGC 215
consensus_13145#3      ATAAATTGATGCTTGGTGAATGGTTATACCCACA-CACTCTTGTAAATACTGCGAAGCGC 79
consensus_13145#0      ATAAATCGATACTTGGTGAATGGTGATAGTTACA-CACTCCTGTAAATACTGCGAAGCGC 1074
consensus_13145#1      GTGTACTTGCAGTTGAAATGCCTTCATGGAAACTGCAAATATGTAATTAGCAGACATTAC 290
                        *  *       ***        * **    **  **    ***** **      *   *

consensus_13145#2      TTACTGAT--ACCTACTGTGATAGT-TGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTG 272
consensus_13145#3      TTATTGAT--ACCTACTGTGATAGT-TGCCCTCTGTTGTAATTTGGACCTGTAGTGCCC- 135
consensus_13145#0      TTACTGAT--ACCTACTGTGATAGT-TGCCCTCTGTTGTAATTTGTATTTGTAGTGCTTG 1131
consensus_13145#1      TTTCTTATTCACCTTTTCCTCTCATATTTCCAGTGGGTTAATTC--AACTGTT-TGCTTG 347
                       **  * **  ****  *    *  * *  **  **   *****   *  ***  ***   

consensus_13145#2      CTCTGAAACTTA--GATCAC-GTTTGACTATAGTTTTCCACTTCCAGTCCTTTTAAAAAA 329
consensus_13145#3      CTCTGAAACTTA--GATCAC-GTTCGAG-------------------------------- 160
consensus_13145#0      CTCTGAAACTTA--GATCAC-GTTTGACTATAGTTTTCCACTTCCAGTCCTTTTACGGAT 1188
consensus_13145#1      ATTTATTACTTGCCGATAGTTGTTTAGGTACTATTCATCATTGCCTTTGCAGCTAATACT 407
                        * *   ****   ***    ***                                    

consensus_13145#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 378
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      ATATGTTGCCATATTACAGAGTTGTTTACCAGGAAGAGAGAAAAATGATGCAATTCGATA 1248
consensus_13145#1      AAAATGAACATATTAACAGGTTGGTTCAGAGAAGAATGAGCTGCAAGAAGAGAATATCAT 467
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      GCAGTGTTAACTGATGATAATTATATGATCCCTGTCACCAAGTCATGAAAATCTGATCTT 1308
consensus_13145#1      GCTCAGAGCCCAAATATTAGAACTGCATAATGAGATTTGTGCAAGGATGGGAAACAACCA 527
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      GTATGTTCATGGGCAGCTTGTTTCAGCATTACAAGTTGAAGAAATATTTGTAATCTGTTG 1368
consensus_13145#1      CCTCAATCAAAGCAATCTTGCGATGTCACAACCAGTAGCCAACAATGGCAGTAACTCAGC 587
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      CAAACTGCATGTTTATGGCTATGAGAAATGATCAACAAGCACAGCTGAAACCATGAGACA 1428
consensus_13145#1      AACTCAACCCGTTCCACATCACATATGGGGCAATGGTCCGAATTTAGCTAT--------- 638
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      TGCAAAGTATATGCTTCTTGAATCTATGGAAATGCTAAGTCCTGCTACCGAACATCATAT 1488
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      TGTTCATCCTAAGACAATCATCAAATCGAAAGAACACAACTCCTGATCTCCCCTATCACA 1548
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      CTGAAAAGAATTGAACTCCCCAACAACTGAAAATAATCACACATGATCAGCACCTCTTAC 1608
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      ------------------------------------------------------------
consensus_13145#3      ------------------------------------------------------------
consensus_13145#0      TCCTCTGAACCCTTCTCTTCTGAANAACTTGCTGTACTCTCCTCCTCCTCCTCGGAGCTC 1668
consensus_13145#1      ------------------------------------------------------------
                                                                                   

consensus_13145#2      -----
consensus_13145#3      -----
consensus_13145#0      CTCTC 1673
consensus_13145#1      -----
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)