cluster # 13165

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Oryza sativa
cluster # 13165 cluster # 13165 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13165#0 length = 1560 sequences # 8
consensus_13165#1 length = 477 sequences # 1

consensus_13165#2 length = 440 sequences # 1
consensus_13165#3 length = 394 sequences # 2

consensusID : consensus_13165#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1560
fasta sequence

                              [CCATCCAATGGTAAAACACAAATAAATTGTGGTTTGAGGTACTACCTGGGTTTGAATGAATTTAGTATTAACTACTTTGTACTGTATTGCTAACAAAACTGACATGTTTACATTTATAGCATCGTGTTGATTGCCTCTTTCTGGAAAATCTGACCTTTAGTGATGAAATCTGTGACAAATAATTTTTATTTGCTCCTTTTTATTTCCATGCTGTATCCATGTTTACTCCATACAGGACACCATAATAATCTGAACTCTGTTTCTTCACTTAGTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGAGAGAACGAACAGACAGGGCAAAAGCTGAAGATTTTGATTCAGAAGAAGAGGATCTACTCAGAGAAGAAAATGAACAGGAGGATGAAATCTTCGATCAAATTGGTGATTGTTTGGGCACTCTTGTTAAGACGTTCAAGACTTATTTCCTTCCATTCTTTGATGAACTTTCCGTCTATTTGACACCTATGTTGGCCAAGGACAAAACAGTAGAGGAACGAAGGATTGCCATATGCATTTTTGATGATGTTGCAGAGCACTGTCGCGAAGCAGCTGTCAGATATTATGATACATATCTTCCTTCTTTATTAGAAGCCTGCACAAGTGAAAATCCAGATATTAGACAGGCTGCAGTTTATGGTATTGGCATTTGCGCTGAGTTTGGTGGCTCTGCATTTAGGCCTCACACTGGTGAGGCCCTGTCCAGACTATACAATGTAATCAAACATCCCAATGCGTTGGACTTGGATAATGCGATGGCATATGACAATGCTGTTTCTGCTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGGCCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAAGTCAGATAGGGAGCTTTTGGGTCATAACAACCAGTATCTTCCAAAGATTGTCTCTATTTTTGCGGAGATATTATGTGCGGGTAAGGATCTGGCAACAGAACAAACTTTTAGTAAGATGGTTAATTTGCTAAGACAGCTTCAGACTACATTGCCTCCTTCAGTACTGGCGTCAACATGGTCTTCTTTGCAGCCGCAGCAACAGCTTGCCCTACAGTCTGTGTTGTCATCATAGCTGAACAGTAACCTCAGCAATGTTGAGCATGTGGCCTTCACATATTGCCTTCTTTTTTGGGTTTTCA-TGTGGTTTTGTGCTTGGGTTCCTGGAGTTTGTGCAGCATACAAATGCCCTG-AGCTTTTGTATGAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGT-ATGGGGCTGAGCAATC-TCTGCTTCA-CAGCA-AGTG-AAGTTGTAAAG-CAATATGTT-CATTTTACTAGGAATTAGTTGGGTTGAAGAAAATGTAAATTA-ACAATTTTGATCGTTGATGTTTTGATATCATATTATTTCAAAAAAAAA]

[+] EMBL AK060273             [CCATCCAATGGTAAAACACAAATAAATTGTGGTTTGAGGTACTACCTGGGTTTGAATGAATTTAGTATTAACTACTTTGTACTGTATTGCTAACAAAACTGACATGTTTACATTTATAGCATCGTGTTGATTGCCTCTTTCTGGAAAATCTGACCTTTAGTGATGAAATCTGTGACAAATAATTTTTATTTGCTCCTTTTTATTTCCATGCTGTATCCATGTTTACTCCATACAGGACACCATAATAATCTGAACTCTGTTTCTTCACTTAGTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGAGAGAACGAACAGACAGGGCAAAAGCTGAAGATTTTGATTCAGAAGAAGAGGATCTACTCAGAGAAGAAAATGAACAGGAGGATGAAATCTTCGATCAAATTGGTGATTGTTTGGGCACTCTTGTTAAGACGTTCAAGACTTATTTCCTTCCATTCTTTGATGAACTTTCCGTCTATTTGACACCTATGTTGGCCAAGGACAAAACAGTAGAGGAACGAAGGATTGCCATATGCATTTTTGATGATGTTGCAGAGCACTGTCGCGAAGCAGCTGTCAGATATTATGATACATATCTTCCTTCTTTATTAGAAGCCTGCACAAGTGAAAATCCAGATATTAGACAGGCTGCAGTTTATGGTATTGGCATTTGCGCTGAGTTTGGTGGCTCTGCATTTAGGCCTCACACTGGTGAGGCCCTGTCCAGACTATACAATGTAATCAAACATCCCAATGCGTTGGACTTGGATAATGCGATGGCATATGACAATGCTGTTTCTGCTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGGCCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAAGTCAGATAGGGAGCTTTTGGGTCATAACAACCAGTATCTTCCAAAGATTGTCTCTATTTTTGCGGAGATATTATGTGCGGGTAAGGATCTGGCAACAGAACAAACTTTTAGTAAGATGGTTAATTTGCTAAGACAGCTTCAGACTACATTGCCTCCTTCAGTACTGGCGTCAACATGGTCTTCTTTGCAGCCGCAGCAACAGCTTGCCCTACAGTCTGTGTTGTCATCATAGCTGAACAGTAACCTCAGCAATGTTGAGCATGTGGCCTTCACATATTGCCTTCTTTTTTGGGTTTTCA TGTGGTTTTGTGCTTGGGTTCCTGGAGTTTGTGCAGCATACAAATGCCCTG AGCTTTTGTATGAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGT ATGGGGCTGAGCAATC TCTGCTTCA CAGCA AGTG AAGTTGTAAAG CAATATGTT CATTTTACTAGGAATTAGTTGGGTTGAAGAAAATGTAAATTA ACAATTTTGATCGTTGATGTTTTGATATC                   ]
[-] EMBL CB677766             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTCACACTGGTGAGGCCCTGTCCAGACTATACAATGTAATCAAACATCCCAATGCGTTGGACTTGGATAATGCGATGGCATATGACAATGCTGTTTCTGCTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGGCCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAAGTCAGATAGGGAGCTTTTGGGTCATAACAACCAGTATCTTCCAAAGATTGTCTTTATTTTTGCGGAGATATTATGTGCGGGTAAGGATCTGGCAACAGAACAAACTTTTAGTAAGATGGTTAATTTGCTAAGACAGCTTCAGACTACATTGCCTCCTTCAGTACTGGCGTCAACATGGTCTTCTTTGCAGCCGCAGCAACAGCTTGCCCTACAGTCTGTGTTGTCATCATAGCTGAACAGTAACCTCAGCAATGTTGAGCATGTGGCCTTCACATATTGCCTTCTTTTTTGGGTTTTCA TGTGGTTTTGTGCTTGGGTTCCTGGAGTTTGTGCAGCATACAAATGCCCTG AGCTTTTGTATGAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGT ATGGGGCTGAGCAATC TCTGCTTCA CAGCA AGTG AAGTTGTAAAG CAATATGTT CATTTTACTAGGAATTAGTTGGGTTGAAGAAAATGTAAATTA ACAATTTTGATCGTTGATGTTTTGATATCATATTATT           ]
[-] EMBL CB675507             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAGACTATACAATGTAATCAAACATCCCAATGCGTTGGACTTGGATAATGCGATGGCATATGACAATGCTGTTTCTGCTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGGCCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAAGTCAGATAGGGAGCTTTTGGGTCATAACAACCAGTATCTTCCAAAGATTGTCTCTATTTTTGCGGAGATATTATGTGCGGGTAAGGATCTGGCAACAGAACAAACTTTTAGTAAGATGGTTAATTTGCTAAGACAGCTTCAGACTACATTGCCTCCTTCAGTACTGGCGTCAACATGGTCTTCTTTGCAGCCGCAGCAACAGCTTGCCCTACAGTCTGTGTTGTCATCATAGCTGAACAGTAACCTCAGCAATGTTGAGCATGTGGCCTTCACATATTGCCTTCTTTTTTGGGTTTTCA TGTGGTTTTGTGCTTGGGTTCCTGGAGTTTGTGCAGCATACAAATGCCCTG AGCTTTTGTATGAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGT ATGGGGCTGAGCAATC TCTGCTTCC CAGCA AGTG AAGTTGTAAAG CAATATGTT CATTTTATTAGGAATTAGTTGGGTTGAAGAAAATGTAAATTA ACAATTTTGATCGTTGATGTTTTGATATCATATTATT           ]
[-] EMBL CB634252             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GACTATACAATGTAATCAAACATCCCAATGCGTTGGACTTGGATAATGCGATGGCATATGACAATGCTGTTTCTGCTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGGCCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAA     ATAGGGAGCTTTTGGGTCATAACAACCAGTATCTTCCAAAGATTGTCTCTATTTTTGCGGAGATATTATGTGCGGGTAAGGATCTGGCAACAGAACAAACTTTTAGTAAGATGGTTAATTTGCTAAGACAGCTTCAGACTACATTGCCTCCTTCAGTACTGGCGTCAACATGGTCTTCTTTGCAGCCGCAGCAACAGCTTGCCCTACAGTCTGTGTTGTCATCATAGCTGAACAGTAACCTCAGTAATGTTGAGCATGTGGCCTTCACATATTGCTTTCTTTTTTGGGTTTTCA TGTGGTTTTGTGCTTGGGTTCCTGGGGTTTGTGCAGCATACAAATGCCCTG AGCTTTTGTATGAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGT ATGGGGCTGAGCAATC TCTGCTTCA CAGCA AGTG AAGTTGTAAAG CAATATGTT CATTTTACTAGGAATTAGTTGGGTTGAAGAAAATGTAAATTAGACAATTTTGATCGTTGATGTTTTGATATCATAT               ]
[+] EMBL CA999668             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACAATGTAATCAAACATCCCAATGCGTTGGACTTGGATAATGCGATGGCATATGACAATGCTGTTTCTGCTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGGCCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAAGTCAGATAGGGAGCTTTTGGGTCATAACAACCAGTATCTTCCAAAGATTGTCTCTATTTTTGCGGAGATATTATGTGCGGGTAAGGATCTGGCAACAGAACAAACTTTTAGTAAGATGGTTAATTTGCTAAGACAGCTTCAGACTACATTGCCTCCTTCAGTACTGGCGTCAACATGGTCTTCTTTGCAGCCGCAGCAACAGCTTGCCCTACAGTCTGTGTTGTCATCATAGCTGAACAGTAACCTCAGCAATGTTGAGCATGTGGCCTTCACATATTGCCTTCTTTTTTGGGTTTTCA TGTGGTTTTGTGCTTGGGTTCCTGGAGTTTGTGCACCATACAAATGCCCTG                                                                                                                                                                                                                           ]
[-] EMBL CB634850             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AACATCCCAATGCGTTGGACTTGGATAATGCGATGGCATATGACAATGCTGTTTCTGCTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGGCCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAAGTCAGATAGGGAGCTTTTGGGTCATAACAACCAGTATCTTCCAAAGATTGTCTCTATTTTTGCGGAGATATTATGTGCGGGTAAGGATCTGGCAACAGAACAAACTTTTAGTAAGATGGTTAATTTGCTAAGACAGCTTCAGACTACATTGCCTCCTTCAGTACTGGCGTCAACATGGTCTTCTTTGCAGCCGCAGCAACAGCTTGCCCTACAGTCTGTGTTGTCATCATAGCTGAACAGTAACCTCAGTAATGTTGAGCATGTGGCCTTCACATATTGCTTTCTTTTTTGGGTTTTCA TGTGGTTTTGTGCTTGGGTTCCTGGGGTTTGTGCAGCATACAAATGCCCTG AGCTTTTGTATGAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGT ATGGGGCTGAGCAATC TCTGCTTCA CAGCA AGTG AAGTTGTAAAG CAATATGTT CATTTTACTAGGAATTAGTTGGGTTGAAGAAAATGTAAATTA ACAATTTTGATCGTTGATGTTTTGATATCA                  ]
[+] EMBL AU101953             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTGCCCTACAGTCTGTGTTGTCATCATAGCTGAACAGTAACCTCAGCAATGTTGAGCATGTGGCCTTCACATATTGCCTTCTTTTTTGGGTTTTCANTGTGGTTTTGTGCTTGGGTTCCTGGAGTTTGTGCAGCATACAAATGCCCTGNAGCTTTTGTATGAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGTCATGGGGCTGAGCAATCNTCTGCTTCACCAGCANAGTGCAAGTTGTAAAGCCAATATGTTCCATTTTACTAGGAATTAGTTGGGTTGAAGAAAATGTAAATTA ACAATTTTGATCGTTGATGTTTTGATATCATATTATTTCAAAAA    ]
[+] EMBL AU161658             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  A TGTGGTTTTGTGCTTGGGTTCCTGGAGTTTGTGCAGCATACAAATGCCCTG AGCTTTTGTATGAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGT ATGGGGCTGAGCAATC TCTGNTTCA CAGCA AGTG AAGTTGTAAAG CAATATGTT CATTTTACTAGGAATTAGTTGGGTTGAAGAAAATGTAAATTA ACAATTTTGATCGTTGATGTTTTGATATCATATTATTTCAAAAAAAAA]




>consensus_13165#0
CCATCCAATGGTAAAACACAAATAAATTGTGGTTTGAGGTACTACCTGGGTTTGAATGAA
TTTAGTATTAACTACTTTGTACTGTATTGCTAACAAAACTGACATGTTTACATTTATAGC
ATCGTGTTGATTGCCTCTTTCTGGAAAATCTGACCTTTAGTGATGAAATCTGTGACAAAT
AATTTTTATTTGCTCCTTTTTATTTCCATGCTGTATCCATGTTTACTCCATACAGGACAC
CATAATAATCTGAACTCTGTTTCTTCACTTAGTTATCTGGAACACTTCTTGAGGAAGGCC
AGGTCAGATCTATAGTAGATGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGA
GAGAACGAACAGACAGGGCAAAAGCTGAAGATTTTGATTCAGAAGAAGAGGATCTACTCA
GAGAAGAAAATGAACAGGAGGATGAAATCTTCGATCAAATTGGTGATTGTTTGGGCACTC
TTGTTAAGACGTTCAAGACTTATTTCCTTCCATTCTTTGATGAACTTTCCGTCTATTTGA
CACCTATGTTGGCCAAGGACAAAACAGTAGAGGAACGAAGGATTGCCATATGCATTTTTG
ATGATGTTGCAGAGCACTGTCGCGAAGCAGCTGTCAGATATTATGATACATATCTTCCTT
CTTTATTAGAAGCCTGCACAAGTGAAAATCCAGATATTAGACAGGCTGCAGTTTATGGTA
TTGGCATTTGCGCTGAGTTTGGTGGCTCTGCATTTAGGCCTCACACTGGTGAGGCCCTGT
CCAGACTATACAATGTAATCAAACATCCCAATGCGTTGGACTTGGATAATGCGATGGCAT
ATGACAATGCTGTTTCTGCTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATG
CATCTCAGGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGG
CCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAAGTCAGATAGGGAGCTTTTGG
GTCATAACAACCAGTATCTTCCAAAGATTGTCTCTATTTTTGCGGAGATATTATGTGCGG
GTAAGGATCTGGCAACAGAACAAACTTTTAGTAAGATGGTTAATTTGCTAAGACAGCTTC
AGACTACATTGCCTCCTTCAGTACTGGCGTCAACATGGTCTTCTTTGCAGCCGCAGCAAC
AGCTTGCCCTACAGTCTGTGTTGTCATCATAGCTGAACAGTAACCTCAGCAATGTTGAGC
ATGTGGCCTTCACATATTGCCTTCTTTTTTGGGTTTTCATGTGGTTTTGTGCTTGGGTTC
CTGGAGTTTGTGCAGCATACAAATGCCCTGAGCTTTTGTATGAAGGGCATGGTTTGCATC
AGAAGTGTATACTGTCACAGAACATCATGGATGTGTATGGGGCTGAGCAATCTCTGCTTC
ACAGCAAGTGAAGTTGTAAAGCAATATGTTCATTTTACTAGGAATTAGTTGGGTTGAAGA
AAATGTAAATTAACAATTTTGATCGTTGATGTTTTGATATCATATTATTTCAAAAAAAAA

consensusID : consensus_13165#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [TTAGTAAGATGGGTTAATTTGCTTAAGACAGCTTTCAAGACTAACACGTGTCCTCCTTCAGTACGGGCGTCAACATGGTCTTCTTGCAGCCGCAGCAACAGCTTGCCCTACCGTCTGTGTGGTCATCATAGCGTGACACCGTAACCGTCAGTAATGTTGAGCAATGTGCCTTCACATATGTGCGTTTCTTTTTTGGGTTTTCATGTGGTTTTGTGCTTGGGTTCCTGGGGTTTGTCCCAGCATACCAATCCCCTGAGCTTTTGTATGAAGGCATGGTTTGCATCAGAAGTGTATACTGTCACACGAACACTCATGGATGTGTATGGGCTGACCCATCTCGTGCTTCCCAGCACAGTGAAGTTGTAAAGCCATATGTTCCTTTTACTAGGAATTATTGGTTGAAAAAATTAAATTACCCATTTTGATCTTGATTTTTGATATCATATTATTTCAAACCTCTCTGCCCCAAAAAAAAAA]

[+] EMBL BI813020             [TTAGTAAGATGGGTTAATTTGCTTAAGACAGCTTTCAAGACTAACACGTGTCCTCCTTCAGTACGGGCGTCAACATGGTCTTCTTGCAGCCGCAGCAACAGCTTGCCCTACCGTCTGTGTGGTCATCATAGCGTGACACCGTAACCGTCAGTAATGTTGAGCAATGTGCCTTCACATATGTGCGTTTCTTTTTTGGGTTTTCATGTGGTTTTGTGCTTGGGTTCCTGGGGTTTGTCCCAGCATACCAATCCCCTGAGCTTTTGTATGAAGGCATGGTTTGCATCAGAAGTGTATACTGTCACACGAACACTCATGGATGTGTATGGGCTGACCCATCTCGTGCTTCCCAGCACAGTGAAGTTGTAAAGCCATATGTTCCTTTTACTAGGAATTATTGGTTGAAAAAATTAAATTACCCATTTTGATCTTGATTTTTGATATCATATTATTTCAAACCTCTCTGCCCCAAAAAAAAAA]




>consensus_13165#1
TTAGTAAGATGGGTTAATTTGCTTAAGACAGCTTTCAAGACTAACACGTGTCCTCCTTCA
GTACGGGCGTCAACATGGTCTTCTTGCAGCCGCAGCAACAGCTTGCCCTACCGTCTGTGT
GGTCATCATAGCGTGACACCGTAACCGTCAGTAATGTTGAGCAATGTGCCTTCACATATG
TGCGTTTCTTTTTTGGGTTTTCATGTGGTTTTGTGCTTGGGTTCCTGGGGTTTGTCCCAG
CATACCAATCCCCTGAGCTTTTGTATGAAGGCATGGTTTGCATCAGAAGTGTATACTGTC
ACACGAACACTCATGGATGTGTATGGGCTGACCCATCTCGTGCTTCCCAGCACAGTGAAG
TTGTAAAGCCATATGTTCCTTTTACTAGGAATTATTGGTTGAAAAAATTAAATTACCCAT
TTTGATCTTGATTTTTGATATCATATTATTTCAAACCTCTCTGCCCCAAAAAAAAAA

consensusID : consensus_13165#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [AAGACAGCTTCAAGACTACATTGCCCTCCNTCAAGTACGGCCGTCAACATGGTCCTCCTTTGCAGCCGCAGCAACAGCTTGCCCTACAGTCTGTGNTGTCATCATAGCTGAACAGTAACCTCAGCAATGTTGAGCATGTGGCCTTCACATATTGCCTTCTTTTTTGGGTTTTCATGTGGTTTTGTGCTTGGGTTCCTGGAGTTTGTGCAGCATACAAATGCCCTGAGCTTTTGTATGAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGTATGGGGCTGAGCAATCTCTCTTCACAGCAAGTGAAGTTGTAAAGCAATATGTTCATTTTACTAGGAATTAGTTGGGTTGAANNAAATGTAAATTAANAATTTTGATCGTTGATGTTTTGATATCATATTANNNNNNNNTTTATAAGGGC]

[-] EMBL C26346               [AAGACAGCTTCAAGACTACATTGCCCTCCNTCAAGTACGGCCGTCAACATGGTCCTCCTTTGCAGCCGCAGCAACAGCTTGCCCTACAGTCTGTGNTGTCATCATAGCTGAACAGTAACCTCAGCAATGTTGAGCATGTGGCCTTCACATATTGCCTTCTTTTTTGGGTTTTCATGTGGTTTTGTGCTTGGGTTCCTGGAGTTTGTGCAGCATACAAATGCCCTGAGCTTTTGTATGAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGTATGGGGCTGAGCAATCTCTCTTCACAGCAAGTGAAGTTGTAAAGCAATATGTTCATTTTACTAGGAATTAGTTGGGTTGAANNAAATGTAAATTAANAATTTTGATCGTTGATGTTTTGATATCATATTANNNNNNNNTTTATAAGGGC]




>consensus_13165#2
AAGACAGCTTCAAGACTACATTGCCCTCCNTCAAGTACGGCCGTCAACATGGTCCTCCTT
TGCAGCCGCAGCAACAGCTTGCCCTACAGTCTGTGNTGTCATCATAGCTGAACAGTAACC
TCAGCAATGTTGAGCATGTGGCCTTCACATATTGCCTTCTTTTTTGGGTTTTCATGTGGT
TTTGTGCTTGGGTTCCTGGAGTTTGTGCAGCATACAAATGCCCTGAGCTTTTGTATGAAG
GGCATGGTTTGCATCAGAAGTGTATACTGTCACAGAACATCATGGATGTGTATGGGGCTG
AGCAATCTCTCTTCACAGCAAGTGAAGTTGTAAAGCAATATGTTCATTTTACTAGGAATT
AGTTGGGTTGAANNAAATGTAAATTAANAATTTTGATCGTTGATGTTTTGATATCATATT
ANNNNNNNNTTTATAAGGGC

consensusID : consensus_13165#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 394
fasta sequence

                              [CGTTTCAGCAATGCCTGAGCTTCTACGTTCAGCGAAGTTGGCAATAGAGAAGAGCCAATCGCAAGGTCGGGATGAATCTTATCTTAAGCAACTGTCTGATTACATAGTTCCAGCTCTTGTAGAGGCTATACATAAAGAACCTGACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAGTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGAGAGAACGAACAGACAGGGCAAAAGCTGAAGATTTTGATTCAGAAGAAGAGGATCTACTCAGAGAAGAAAATGAACAGGAGGATGAAATCTTCGATCAAATTGGTGATTGTTTG]

[+] EMBL CB677765             [CGTTTCAGCAATGCCTGAGCTTCTACGTTCAGCGAAGTTGGCAATAGAGAAGAGCCAATCGCAAGGTCGGGATGAATCTTATCTTAAGCAACTGTCTGATTACATAGTTCCAGCTCTTGTAGAGGCTATACATAAAGAACCTGACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAGTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGAGAGAACGAACAGACAGGGCAAAAGCTGAAGATTTTGATTCAGAAGAAGAGGATCTACTCAGAGAAGAAAATGAACAGGAGGATGAAATCTTCGATCAAATTGGTGATTGTTTG]
[+] EMBL CF324548             [CGTTTCAGCAATGCCTGAGCTTCTACGTTCAGCGAAGTTGGCAATAGAGAAGAGCCAATCGCAAGGTCGGGATGAATCTTATCTTAAGCAACTGTCTGATTACATAGTTCCAGCTCTTGTAGAGGCTATACATAAAGAACCTGACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAGTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGATGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGAGAGAACGAACAGACAGGG                                                                                               ]




>consensus_13165#3
CGTTTCAGCAATGCCTGAGCTTCTACGTTCAGCGAAGTTGGCAATAGAGAAGAGCCAATC
GCAAGGTCGGGATGAATCTTATCTTAAGCAACTGTCTGATTACATAGTTCCAGCTCTTGT
AGAGGCTATACATAAAGAACCTGACACACAAATATGTGCAAGCATGCTGGAATCGCTGAA
TGAATCAATACAGTTATCTGGAACACTTCTTGAGGAAGGCCAGGTCAGATCTATAGTAGA
TGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGAGAGAACGAACAGACAGGGC
AAAAGCTGAAGATTTTGATTCAGAAGAAGAGGATCTACTCAGAGAAGAAAATGAACAGGA
GGATGAAATCTTCGATCAAATTGGTGATTGTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      CCATCCAATGGTAAAACACAAATAAATTGTGGTTTGAGGTACTACCTGGGTTTGAATGAA 60
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      TTTAGTATTAACTACTTTGTACTGTATTGCTAACAAAACTGACATGTTTACATTTATAGC 120
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      ATCGTGTTGATTGCCTCTTTCTGGAAAATCTGACCTTTAGTGATGAAATCTGTGACAAAT 180
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      AATTTTTATTTGCTCCTTTTTATTTCCATGCTGTATCCATGTTTACTCCATACAGGACAC 240
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      CATAATAATCTGAACTCTGTTTCTTCACTTAGTTATCTGGAACACTTCTTGAGGAAGGCC 300
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      AGGTCAGATCTATAGTAGATGGAATTAAAGAAGTAATAACTGCGAGTGCTCTCAGAAGGA 360
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      GAGAACGAACAGACAGGGCAAAAGCTGAAGATTTTGATTCAGAAGAAGAGGATCTACTCA 420
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      GAGAAGAAAATGAACAGGAGGATGAAATCTTCGATCAAATTGGTGATTGTTTGGGCACTC 480
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      TTGTTAAGACGTTCAAGACTTATTTCCTTCCATTCTTTGATGAACTTTCCGTCTATTTGA 540
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      CACCTATGTTGGCCAAGGACAAAACAGTAGAGGAACGAAGGATTGCCATATGCATTTTTG 600
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      ATGATGTTGCAGAGCACTGTCGCGAAGCAGCTGTCAGATATTATGATACATATCTTCCTT 660
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      CTTTATTAGAAGCCTGCACAAGTGAAAATCCAGATATTAGACAGGCTGCAGTTTATGGTA 720
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      TTGGCATTTGCGCTGAGTTTGGTGGCTCTGCATTTAGGCCTCACACTGGTGAGGCCCTGT 780
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      CCAGACTATACAATGTAATCAAACATCCCAATGCGTTGGACTTGGATAATGCGATGGCAT 840
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      ATGACAATGCTGTTTCTGCTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATG 900
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      CATCTCAGGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGG 960
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      CCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAAGTCAGATAGGGAGCTTTTGG 1020
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ------------------------------------------------------------
consensus_13165#2      ------------------------------------------------------------
consensus_13165#0      GTCATAACAACCAGTATCTTCCAAAGATTGTCTCTATTTTTGCGGAGATATTATGTGCGG 1080
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      ---------------------------TTAGTAAGATGGGTTAATTTGCTTAAGACAGCT 33
consensus_13165#2      ---------------------------------------------------AAGACAGCT 9
consensus_13165#0      GTAAGGATCTGGCAACAGAACAAACTTTTAGTAAGATGG-TTAATTTGCT-AAGACAGCT 1138
consensus_13165#3      ------------------------------------------------------------
                                                                                   

consensus_13165#1      TTCAAGACTAACACGTGTCCTCCTTCA-GTACGGGCGTCAACATGGTCTTC--TTGCAGC 90
consensus_13165#2      T-CAAGACTA-CAT-TGCCCTCCNTCAAGTACGGCCGTCAACATGGTCCTCCTTTGCAGC 66
consensus_13165#0      T--CAGACTA-CAT-TG-CCTCCTTCA-GTACTGGCGTCAACATGGTCTTC-TTTGCAGC 1191
consensus_13165#3      ---------------CG-TTTCAGCAATGCCTGAGCTTCTACGTTCAGCGAAGTTGGCAA 44
                                       *   **    * *      * ** ** *         ***    

consensus_13165#1      CGCAGCAACAGCTTGCCCTACCGTCTGTGTGGTCATCATAGCGTGACACCGTAACCGTCA 150
consensus_13165#2      CGCAGCAACAGCTTGCCCTACAGTCTGTGNTGTCATCATAGCTGAACA--GTAACC-TCA 123
consensus_13165#0      CGCAGCAACAGCTTGCCCTACAGTCTGTGTTGTCATCATAGCTGAACA--GTAACC-TCA 1248
consensus_13165#3      TAGAG-AAGAGCCAATCGCAAGGTCGGGATGA--ATCTTATCTTAA----GCAACTGTCT 97
                          ** ** ***    *  *  *** *       *** ** *   *    * ***  ** 

consensus_13165#1      GTAATGTTGAGCAATGTGCCTTCACATATGTGCGTTTCTTTTTTGGGTTTTCATGTGGTT 210
consensus_13165#2      GCAATGTTGAGCATGTGGCCTTCACATAT-TGC-CTTCTTTTTTGGGTTTTCATGTGGTT 181
consensus_13165#0      GCAATGTTGAGCATGTGGCCTTCACATAT-TGC-CTTCTTTTTTGGGTTTTCATGTGGTT 1306
consensus_13165#3      G----ATTACATAGTTCCAGCTCTTGTAGAGGCTATACATAAAGAACCTGACACACAAAT 153
                       *     **    *        **   **   **  * * *        *  **      *

consensus_13165#1      TTGTGCTTGGGTTCCTGGGGT-TTGTCCCAGC--ATACCAATCCCCTGAGC-TTTTGTAT 266
consensus_13165#2      TTGTGCTTGGGTTCCTGGAGT-TTGTGC-AGC--ATACAAATGCCCTGAGC-TTTTGTAT 236
consensus_13165#0      TTGTGCTTGGGTTCCTGGAGT-TTGTGC-AGC--ATACAAATGCCCTGAGC-TTTTGTAT 1361
consensus_13165#3      ATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAGTTATCTGGAACACTTCTTGA 213
                        *****  *  * *  *      **    *    ****   *  *  ** *  **  *  

consensus_13165#1      GAAGG-CATGGTTTGCATCAGAAGTGTATACTGTCACACGAACACTCATGGATGTGTATG 325
consensus_13165#2      GAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACA-GAACA-TCATGGATGTGTATG 294
consensus_13165#0      GAAGGGCATGGTTTGCATCAGAAGTGTATACTGTCACA-GAACA-TCATGGATGTGTATG 1419
consensus_13165#3      GGAAGGCCAGGTCAG-ATCTATAGTAGATGGAATTAAAGAAGTA---ATAACTGCGAGTG 269
                       * * * *  ***  * ***   ***  **    * * *  *  *   **   ** *  **

consensus_13165#1      GG-CTGACCCATCTCGTGCTTCCCAGCACAGTGAAGTTGTAAAGCCATATGTTCCTTTTA 384
consensus_13165#2      GGGCTGAGCAATCTCT--CTTCACAGCA-AGTGAAGTTGTAAAGCAATATGTTCATTTTA 351
consensus_13165#0      GGGCTGAGCAATCTCT-GCTTCACAGCA-AGTGAAGTTGTAAAGCAATATGTTCATTTTA 1477
consensus_13165#3      CT-CTCAGAAGGAGAGAACGAACAGACAGGGCAAAAGC-TGAAGATTTTGATTCAGAAGA 327
                          ** *           *       **  *  **    * ***   *   ***     *

consensus_13165#1      CTAGGAATTATT--GGTTGAAAAAATT--AAATTACCCATTTTGATC-TTGAT-TTTTGA 438
consensus_13165#2      CTAGGAATTAGTTGGGTTGAANNAAATGTAAATTAANAATTTTGATCGTTGATGTTTTGA 411
consensus_13165#0      CTAGGAATTAGTTGGGTTGAAGAAAATGTAAATTAACAATTTTGATCGTTGATGTTTTGA 1537
consensus_13165#3      AGAGGATCTACTCAGA--GAAGAAAAT--GAACAGGAGGATGAAATCTTCGAT---CAAA 380
                         ****  ** *  *   ***  ** *   **        *   *** * ***      *

consensus_13165#1      TATCATATTATTTCAAACCTCTCTGCCCCAAAAAAAAAA 477
consensus_13165#2      TATCATATTANNNNNNNNTTTATAAGGGC---------- 440
consensus_13165#0      TATCATATTATTTCAAAAAAAAA---------------- 1560
consensus_13165#3      TTGGTGATTGTTTG------------------------- 394
                       *     ***