These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2389 fasta sequence [GGAGCGAAGCGAAGCGAGGGGAGTAGTAGTGCTACTTATATTATTATTTTTTTCTTTTCTCACCCGCTTTTATACCCACACCCTCTCTCTCTCTCTCTCTCCTCTCCTTCCCTCTTCTCTCGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGAGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCCGCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGTTTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATATTGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTCAGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCATGGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGTTTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCG---AGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTT-CCTTCAACGCCGCCTGCTATATCCAGAGCAGATCCTTCATCATCCTCCAGGGGGCATTCTCTACCAACAGATGCAGACTCAATGAGGAAAGCACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCATCTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCTCAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGTCAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATAGTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTACTACACATTCACCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGTCCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTATTGTGCGGCCATGTTTACCATGCTGACTGTTTGGATAGCTTAACTGCAGAAGCTGACAAATATGATCCCCCTTGTCCTGTATGCACCCATGGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAAAGAACAAGATACCTAAAAATGTGATAGTTGATGTTAATCTAGATGGGAGCTCTAAGCATCAGAAGGAAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTAGTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAGAGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGG-CAAGGCACTGGAGGGAATAGCATAA-CTGCCAGTCATCATCGAGAAATCCCTCTT-GAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCATGCGGGA-G-CTGAAGTCAAGCCGAATCGGTG-CA-AATGATATGACATGGCTGTTGAACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTCGGCCGCAAGCACTTGTCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTATTTCAGAGCCCA-GTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATC-TAGTTACTATGTTTTGTGGTTTTGTATTATTGGTTATGTGCCCCCTTTATTTTATGGTTGCAAATTCATATAGTTTGGGAACTTGCGTACATAGGGGGAATCTTAACTCGGGAGATGCTATTTATTCAAAAAAAAGGTCACAGAAGGCATGTAACGGTTATGTAATGTTGTTTGTCATCTTCGCAGACGTGGTAGTATGATGGTCATGCATGTTTTTAAAAA] [-] EMBL AK062597 [GGAGCGAAGCGAAGCGAGGGGAGTAGTAGTGCTACTTATATTATTATTTTTTTCTTTTCTCACCCGCTTTTATACCCACACCCTCTCTCTCTCTCTCTCTCCTCTCCTTCCCTCTTCTCTCGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGAGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCCGCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAG ] [-] EMBL AA753994 [ tttttttTCTCTCTCTCCTCTCCTTCCCTCTTCTCTCGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGANGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGANCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAAGCGGAAGCGGANGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGANGGCGCCGCTCTGATCGGTGCTCCGACTCCGANTGGTTCTAAGCTAGGAAGGATGATCATGTTACGTTTTGCTCAAGATTTTGCTTCCCACTGATAAGATCTCAGCATTTGGATGATTAACGCATATTGAATTCTTTCTCNATAAACATGGGAACTAATTGCTGTNTA CTGCNAAAAAAAGCCCancat ] [+] EMBL AK102361 [ TCCCTCTTCTCTCGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGAGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCCGCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGTTTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATATTGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTCAGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCATGGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGTTTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCGAGCAGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTT CCTTCAACGCCGCCTGCTATATCCAGAGCAGATCCTTCATCATCCTCCAGGGGGCATTCTCTACCAACAGATGCAGACTCAATGAGGAAAGCACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCATCTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCTCAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGTCAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATAGTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTACTACACATTCACCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGTCCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTATTGTGCGGCCATGTTTACCATGCTGACTGTTTGGATAGCTTAACTGCAGAAGCTGACAAATATGATCCCCCTTGTCCTGTATGCACCCATGGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAAAGAACAAGATACCTAAAAATGTGATAGTTGATGTTAATCTAGATGGGAGCTCTAAGCATCAGAAGGAAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTAGTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAGAGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGG CAAGGCACTGGAGGGAATAGCATAA CTGCCAGTCATCATCGAGAAATCCCTCTT GAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCATGCGGGA G CTGAAGTCAAGCCGAATCGGTG CA AATGATATGACATGGCTGTTGAACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTCGGCCGCAAGCACTTGTCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTATTTCAGAGCCCA GTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATC TAGTTACTATGTTTTGTGGTTTTGTATTATTGGTTATGTGCCCCCTTTATT ] [+] EMBL CB660087 [ TAGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGAGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCCGCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGTTTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATATTGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTCAGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCATGGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGTTTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCG AGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTT CCTTNCACGCCGCCTGCTATATCCAGAGCAGA ] [+] EMBL CB625948 [ AGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGAGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCCGCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGTTTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATATTGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTCAGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCATGGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGTTTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCGAGCAGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTTCCCTTC ACGCCGCCTGCTATATCCAGAGCAGATCCTTCATCATCCTCCAGGGGGCATTCTCTA ] [+] EMBL CF324306 [ gATTGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTCAGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCATGGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGTTTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCG AGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTT CCTTC ACGCCG ] [+] EMBL CB649113 [ CCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCG AGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTT CCTTCAACGCCGCCTGCTATATCCAGAGCAGATCCTTCATCATCCTCCAGGGGGCATTCTCTACCAACAGATGCAGATTCAATGAGGAAAGCACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCATCTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCTCAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGTCAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATAGTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTACTACACATTCACCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGTCCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTATTGTGCGGCCATGTTTACCATGCT ] [+] EMBL CA763918 [ CACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCATCTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCTCAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGTCAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATAGTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTACTACACATTCATCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGTCCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTGTTGTGCGGCCATGTTTACCATGCTGACTGTTTGGATAGCTTAACTGCAGAAGCTGACAAATATGATCCCCCTTGTCCTGTATGCACCCATGGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAAAGAACAAGATACCTAAAAATGTGATAGTTGATGTCAATCTAGATGGGAGCTCTAAGCATCAGAAGGGAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTGGCTTGAAGGGCTCGGTTAGTCGCCCGNTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATNCCAGTCAATTTCAGAGAGCGAGTCTGNCAGAAAGAAGGGCTTCTGGGCCAAGGCACTGGANGGAATAGCATAA CTGGCAGTCATCATCGAAAAATCCCTCTT GAANAGGAGCTGTACTTCCCANCGAGAACAAGCATGCNGGANA CTGAANTCAAG ] [-] EMBL CB649114 [ GGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAAAGAACAAGATACCTAAAAATGTGATAGTTGATGTTAATCTAGATGGGAGCTCTAAGCATCAGAAGGAAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTAGTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAGAGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGG CAAGGCACTGGAGGGAATAGCATAA CTGCCAGTCATCATCGAGAAATCCCTCTT GAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCATGCGGGA G CTGAAGTCAAGCCGAATCGGTG CA AATGATATGACATGGCTGTTGAACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTCGGCCGCAAGCACTTGTCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTATTTCAGAGCCCA GTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATC TAGTTACTATGTTTTGTGGTTTTGTATTATTGGTTATGTGCCCCCTTTATTTTATGGTTGCAAATTCATATAGTTTGGGAACTTGCGTACATAGGGGGAATCTTAACTCGGGAGATGCTATTTATTCAAAAAAAAGG ] [-] EMBL CB625978 [ TTGGAATCAAAGACAAAGAACAAGATGCCTAAAAATGTGATAGTTGATGTTAATCTAGAGGGGAGCTCTAAGCATCAGAAGGGAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTAGTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAGAGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGG CAAGGCACTGGAGGGAATAGCATAA CTGCCAGTCATCATCGAGAAATCCCTCTT GAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCATGCGGGA G CTGAAGTCAAGCCGAATCGGTG CA AATGATATGACATGGCTGTTGAACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTCGGCCGCAAGCACTTGTCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTATTTCAGAGCCCA GTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTATGTTTTGTGGTTTTGTATTATTGGAAAGGTGCCCCCTTTATTTTATGGTTGCAAATTCA ATAaaaaaga ] [+] EMBL BM038680 [ gTCT GG CAA GCACTGGAGGGAATAGCATAACCTGCCAGTCATCATCGAG AATCCCTCTTNGAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCAT CGGGA GTCTGAAGTCAAACCGAATCGGTGCCACAATGATATGACATGGCTGTTG ACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTC GCCGCAAGCACTT TCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTATTTCAGAGCCCANGTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTATGTTTTGTGGTTTTGTATTATTGGTTATGTGCCCCCTTTATTTTATGGTTGCAAATTCATATAGTTTGGGAACTTGCGTACATATTTGGAATCTTAACTCGGGAGATGCTATTTATGCATGACACGCATCACAGAAGGCATGTAACGGTTATGTAATGTTGTTTGTCATCTTCGCAGACGTGGTAGTATGATGGTCATGCATGTTTTTAAAAA] consensusID : consensus_13181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [ATCGAGTATCCCTCTTGAAGAGGACCTGTACTCCCAAGCGTAGTAGCATAGCCATGCGGGACTGAAGTCAACCGAATCGGTGCAAATGATATGACATGGCTGTTGCAACGACACTCCGCATTGAAGGTTTCTCCTAGCCATGAGTGCATGATTGCGGCCGCAAGCACCTGTGGTGCGTGCTGGGAAAGGGTGCTCGATAGTGAGAATGAACAGTTGGATGATAGTGATACCTGATGCAACTGGAGGGTTTATTTGCAGAGCCCAGTGCGCACGTGTTGAGTGAGCGAGTAATGCTAACAGAAAAAGGGGATCGATGGCCCTTCAGAGTTGGAGACCGAAGGTCCATTGCTGTGTGTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTATTTTTGTGTTTTGTATTATTGGTTATGGTCCCCCCTTTAGTTTATGTTCCAAATTCATAT] [+] EMBL BI801732 [ATCGAGTATCCCTCTTGAAGAGGACCTGTACTCCCAAGCGTAGTAGCATAGCCATGCGGGACTGAAGTCAACCGAATCGGTGCAAATGATATGACATGGCTGTTGCAACGACACTCCGCATTGAAGGTTTCTCCTAGCCATGAGTGCATGATTGCGGCCGCAAGCACCTGTGGTGCGTGCTGGGAAAGGGTGCTCGATAGTGAGAATGAACAGTTGGATGATAGTGATACCTGATGCAACTGGAGGGTTTATTTGCAGAGCCCAGTGCGCACGTGTTGAGTGAGCGAGTAATGCTAACAGAAAAAGGGGATCGATGGCCCTTCAGAGTTGGAGACCGAAGGTCCATTGCTGTGTGTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTATTTTTGTGTTTTGTATTATTGGTTATGGTCCCCCCTTTAGTTTATGTTCCAAATTCATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13181#0 GGAGCGAAGCGAAGCGAGGGGAGTAGTAGTGCTACTTATATTATTATTTTTTTCTTTTCT 60 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CACCCGCTTTTATACCCACACCCTCTCTCTCTCTCTCTCTCCTCTCCTTCCCTCTTCTCT 120 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAG 180 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTG 240 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 AGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCG 300 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 GAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCC 360 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 GCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGT 420 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 TTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATAT 480 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 TGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTC 540 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 AGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCAT 600 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 GGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGT 660 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 TTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAA 720 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATA 780 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 AATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCGAGGTAGATCCA 840 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTG 900 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 TGGCTTCAGATTCGAAGATGTCAATCTCTGTTCCTTCAACGCCGCCTGCTATATCCAGAG 960 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CAGATCCTTCATCATCCTCCAGGGGGCATTCTCTACCAACAGATGCAGACTCAATGAGGA 1020 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 AAGCACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCAT 1080 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCT 1140 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGT 1200 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATA 1260 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 GTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTA 1320 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CTACACATTCACCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGT 1380 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 CCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTATTGTGCGGCCATGTTTACC 1440 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 ATGCTGACTGTTTGGATAGCTTAACTGCAGAAGCTGACAAATATGATCCCCCTTGTCCTG 1500 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 TATGCACCCATGGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAA 1560 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 AGAACAAGATACCTAAAAATGTGATAGTTGATGTTAATCTAGATGGGAGCTCTAAGCATC 1620 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 AGAAGGAAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTA 1680 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 GTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAG 1740 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 AGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGGCAAGGCACTGGAGGGAATAGCATAACT 1800 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 GCCAGTCATCATCGAGAAATCCCTCTTGAAGAGGAGCTGTACTCCCAAGCG----AGAGC 1856 consensus_13181#1 ----------ATCGAGTA-TCCCTCTTGAAGAGGACCTGTACTCCCAAGCGTAGTAGCAT 49 ****** * **************** *************** ** consensus_13181#0 AAGCATGCGGGAGCTGAAGTCAAGCCGAATCGGTGCAAATGATATGACATGGCTGTTG-A 1915 consensus_13181#1 AGCCATGCGGGA-CTGAAGTCAA-CCGAATCGGTGCAAATGATATGACATGGCTGTTGCA 107 * ********* ********** ********************************** * consensus_13181#0 ACGAC-CTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATT----CGGCCGCAAGCAC 1970 consensus_13181#1 ACGACACTCCGCATTGAAGGTTTCTCCTAGCCATGAGTGCATGATTGCGGCCGCAAGCAC 167 ***** **************************** ** ************* consensus_13181#0 TTGT----CGTGCTGG-AAAGGGT-CTCGATAGT-AGAAT-AACAGTTGAT--ATAGT-A 2019 consensus_13181#1 CTGTGGTGCGTGCTGGGAAAGGGTGCTCGATAGTGAGAATGAACAGTTGGATGATAGTGA 227 *** ******** ******* ********* ***** ******** ***** * consensus_13181#0 TACT--ATGCAACTGA--GGTTTATTT-CAGAGCCCAGT-CGCA---GTTTAGT-AGCGA 2069 consensus_13181#1 TACCTGATGCAACTGGAGGGTTTATTTGCAGAGCCCAGTGCGCACGTGTTGAGTGAGCGA 287 *** ********* ********* *********** **** *** *** ***** consensus_13181#0 GTAAT-CTAACAGAAAAAGGGGAT-GATGGCC-TTCAGAGTTG-AGACCGAAGGTCCATT 2125 consensus_13181#1 GTAATGCTAACAGAAAAAGGGGATCGATGGCCCTTCAGAGTTGGAGACCGAAGGTCCATT 347 ***** ****************** ******* ********** **************** consensus_13181#0 GCTGTGT-TGCAAGGTTATATATAATCCAGCGTCCCAGCAATCT-AGTTACTATGTTTTG 2183 consensus_13181#1 GCTGTGTGTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTAT-TTTTG 406 ******* ************************************ ********* ***** consensus_13181#0 TGGTTTTGTATTATTGGTTATG-TGCCCCCTTTATTTTATGGTTGCAAATTCATATAGTT 2242 consensus_13181#1 TG-TTTTGTATTATTGGTTATGGTCCCCCCTTTAGTTTATG-TTCCAAATTCATAT---- 460 ** ******************* * ********* ****** ** *********** consensus_13181#0 TGGGAACTTGCGTACATAGGGGGAATCTTAACTCGGGAGATGCTATTTATTCAAAAAAAA 2302 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 GGTCACAGAAGGCATGTAACGGTTATGTAATGTTGTTTGTCATCTTCGCAGACGTGGTAG 2362 consensus_13181#1 ------------------------------------------------------------ consensus_13181#0 TATGATGGTCATGCATGTTTTTAAAAA 2389 consensus_13181#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||