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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 810 fasta sequence
[TGAAGTATGTGCGAGAAGGTGATTTTTTGACTGTTGATATTGAGAAAGGAATGCAAGATGGGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAAAAA]
[+] EMBL AK062718 [TGAAGTATGTGCGAGAAGGTGATTTTTTGACTGTTGATATTGAGAAAGGAATGCAAGATGGGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAgggtca ]
[+] EMBL BP184764 [ AAGATGGGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACC AAATATT ]
[+] EMBL OSR18381A [ TTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACC ]
[+] EMBL AU184465 [ TCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCT ]
[+] EMBL OSR23401A [ CATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGNTTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGNGGTTAGGNAGTTCAAAGGGGAAGGAATGCCATTNTACCNGNGCAACAAGNAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCNGAAGTCCAAGCTGAAGNGC ]
[+] EMBL OSR21091A [ GAGGAAGGAGAGCCTAAGATTNATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATNTCCCTGCTCCAAGCTCTGGTCGGNTTCGNGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACANGAAAGGCGACCTATATGTAACTTTCGNGGTTTTATTNCCGAAAACC ]
[+] EMBL CF330564 [ CAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAG ]
[+] EMBL AU031803 [ ATATGTNACTTTCGAGGTTTTATTCCCGAAANCCCTAACCGACGNCCAGAAGTCCAAGCTGNAGAGCATTCTCACATAACCGAAGGCCCAGGTTTNCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAA ]
[+] EMBL AU184466 [ AGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAA ]
[+] EMBL AU184377 [ TTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAA ]
[+] EMBL CA757687 [ GTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTCTTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTTCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAAAAA]
consensusID : consensus_13192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence
[GCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU223300 [GCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13192#0 TGAAGTATGTGCGAGAAGGTGATTTTTTGACTGTTGATATTGAGAAAGGAATGCAAGATG 60
consensus_13192#1 ------------------------------------------------------------
consensus_13192#0 GGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATT 120
consensus_13192#1 ------------------------------------------------------------
consensus_13192#0 TGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGC 180
consensus_13192#1 ------------------------------------------------------------
consensus_13192#0 ACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGC 240
consensus_13192#1 ------------------------------------------------------------
consensus_13192#0 ATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTA 300
consensus_13192#1 ------------------------------------------------------------
consensus_13192#0 GGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATG 360
consensus_13192#1 ------------------------------------------------------------
consensus_13192#0 TAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGA 420
consensus_13192#1 ------------------------------------------------------------
consensus_13192#0 GCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTC 480
consensus_13192#1 ------------------------------------------------------------
consensus_13192#0 ATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCA 540
consensus_13192#1 ----------------------------------------------GCTTACAAGCACCA 14
**************
consensus_13192#0 GCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTT 600
consensus_13192#1 GCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTT 74
************************************************************
consensus_13192#0 AATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACC-GGGTGTAGCATTTAG 659
consensus_13192#1 AATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCCGGGTGTAGCATTTAG 134
******************************************** ***************
consensus_13192#0 GAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATG 719
consensus_13192#1 GAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATG 194
************************************************************
consensus_13192#0 GTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGT 779
consensus_13192#1 GTAGAATTGTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 240
**************** * ***** * * *
consensus_13192#0 AAAATTAAATGGAATTTAAGTCAAAAAAAAA 810
consensus_13192#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||