These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 696 fasta sequence [AAGTCTTCCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGT--AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT-GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT-CCTCGTCCAC-TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT-AGC-TAGCTAGCTAGCTA-GGAGGTACCAT-GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGATG-GTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA998800 [AAGTCTTCCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGTAGAGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT CCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATA ] [+] EMBL OSC9311 [ TCTTCCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGT AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTNGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGNGAGGATCGTGGAGTTCGGCAACTTCCAGANCAGCGGCCTCTCCAT NCTCGTCCAC TNCATCATCTACTTCGCGCTCATCG ] [+] EMBL CA999744 [ CCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGTAGAGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT CCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTT ] [+] EMBL C73696 [ CAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGT AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCTGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCNGCCTCTCCAT CCTCGTCCACTTCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAAGCTTAGCTAGCTAGTTAGGGAGGTACCAT GCTNGCT ] [+] EMBL OS1321859 [ ACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGT AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGNCCNGTGTTCATAGGGCTGGTGCTGTTCATCCTNCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT NCTCGTCCAC TNCATCAT ] [+] EMBL AU174396 [ CTCATTCTTCTCTTCTGTCAGT AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT CCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAAaaa ] [+] EMBL OSC9761 [ TCATTCTTCTCTTCTGTCAGT AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGACTTCG ] [+] EMBL AK062973 [ TCTTCTCTTCTGTCAGT AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT CCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGATG GTTAATTACTCATGATAAGTTCATATGAAAAAT ] [+] EMBL AU174115 [ AGGTAGCTAGAGANAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCANCGGCCTCTCCAT CCTCGTCCAC TCCATCATNTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGATG GTTAATTACTCATGATAAGTTCATATGAAAAAaaa ] [+] EMBL BE229397 [ cgaGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT CCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCATGGCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTAT TATATATATATGATTTTCYYAATTYCGGCTAGCTAGCAATTTGANTACTACTGTTCYGTGAGTTTTAGTTTATATAATGTAAACTYACTTGAGCTTGTAGCTTAAGATGTGTTAATTACTCATGWTATGYTCATATGAAAAWTGTGGTTAATTAAAAA ] [+] EMBL AU091312 [ GTCGCCGGGGCTGGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCATCCCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTNCCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGATG GTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAATTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [TGAAGGAGTAGAAAAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGTATAGAGAGAGAGAGAGTGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGNCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCTAGCTAGGAGGTACCATGGCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATNTATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGACGGTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAATTATTCTGATTTGTTTTTTTTTGTTTTCTCTTTT] [+] EMBL CF308755 [TGAAGGAGTAGAAAAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGTATAGAGAGAGAGAGAGTGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGNCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCTAGCTAGGAGGTACCATGGCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATNTATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGACGGTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAATTATTCTGATTTGTTTTTTTTTGTTTTCTCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13196#0 AAGTCTTCCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACA 60 consensus_13196#1 ------------------------------------------------------------ consensus_13196#0 TCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTC 120 consensus_13196#1 ----TGAAGGAGTAGAAAAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTC 56 * ****************************************** consensus_13196#0 AGTAGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTA 180 consensus_13196#1 AGTATAGAGAGAGAGAGAGTGA----GATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTA 112 **** ************** ** ********************************** consensus_13196#0 GAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCC-GGTGTTCATAGGGCTGGTGCTGT 239 consensus_13196#1 GAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGNCCGGTGTTCATAGGGCTGGTGCTGT 172 ********************************** * *********************** consensus_13196#0 TCATCCTGCTGTCGCCGGGGCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGT 299 consensus_13196#1 TCATCCTGCTGTCGCCGGGGCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGT 232 ************************************************************ consensus_13196#0 TCGGCAACTTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGC 359 consensus_13196#1 TCGGCAACTTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGC 292 ************************************************************ consensus_13196#0 TCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCT 419 consensus_13196#1 TCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCT 352 ************************************************************ consensus_13196#0 AGCTAGGAGGTACCATG-CTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAA 478 consensus_13196#1 AGCTAGGAGGTACCATGGCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAA 412 ***************** ****************************************** consensus_13196#0 TTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTA 538 consensus_13196#1 TTACTAGCATTTATGCAAGAATGGTATN-TATATATATATGATTTTCTTAATTTGGGCTA 471 *************************** ******************************* consensus_13196#0 GCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTG 598 consensus_13196#1 GCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTG 531 ************************************************************ consensus_13196#0 AGCTTGTAGCTTAAGATGGTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAAT 658 consensus_13196#1 AGCTTGTAGCTTAAGACGGTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAAT 591 **************** ******************************************* consensus_13196#0 TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 696 consensus_13196#1 TATTCTGATTTGTTTTTTTTTGTTTTCTCTTTT----- 624 ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||