These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2374 fasta sequence [TTTGCCTTTTGCTGCCCGCTGCCTGCTTTGCCCACGAAAAGACAACCCAACCCGGCGAGTCGTAGCAGAGTAGAGAGAGAAAGAGGAGGAGGAGGAAAAAAAATAAAATTAAGGCAGTTCGTTCGTTCCCCACTTTTGCCTGCTCCAATCGCCGCCCCCCGCCCCGCCGCCTCGTCGCCCGCCCGAGATCCGCTCCGCG-TTGCCTCCCGCCGCCGCCGAGATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGATATCTGATCCAATTGTTAGTTGGATTGACCGTTTCAGAGTGCCTGCAGTTGGCTGCTGGATTGGTCAATATAA-GAAAACCGTTGGTTTCGGAGATGATGCCATTGTGAGTGGAAATGGATTCCGCGAGAAGTTGGTTCCAGAAGTTCCAGCCGAGGGACAAATCGAAGAGTCCAGCGGTGGCTGCCAGTCATGGAAAGGATCCAGGAAAGCCACCAATTGATGACGCGCCATCTAGTGCAACAAAACAGAGGGTTGCCGCGGCAAAACAGTACATTGAGAATCATTACAAGACCAAGATGAAGTCCCTGCAAGATAGGAAAGAAAGGCGCTGGATGTTGGAGAGGAAACTACAGGATGCAGAGGTTCCTGTAGAAGAGCAAAATAATATTCTAAAGCATTTGGAGAAAAAGGAGACCGAATATATGCGGTTGCAGAGACATAAGATGGGGGTTGAAGATTTTGAACTTTTGACAATTATTGGAAGAGGTGCATTTGGCGAGGTGCGTCTTTGTAGAGAGAAGGCGTCTAAGAATGTATATGCAATGAAAAAGCTTAAGAAATCTGAGATGCTTCGTAGGGGCCAGGTTGAGCATGTCAAAGCTGAAAGAAACCTTCTTGCAGAAGTTGATAGTGCTTTTATAGTCAAGCTCTACTATTCTTTTCAAGATGAAGAATACTTGTATCTCATCATGGAGTACCTTCCTGGTGGTGACATGATGACTTTGCTTATGCGCAAGGACACACTGACAGAAGATGAGGCCAGATTTTACATTGCAGAAACCGTATTAGCAATAGAATCTATTCACAAGCACAGCTACATTCACCGGGATATCAAACCAGACAATCTATTGTTAGATCGCAGTGGTCACTTGAAGCTTTCTGACTTTGGATTGTGTAAACCTTTGGATAGCAGTAATTTTCCAAATTTGAATGAGCCAGATTATACATCTACAAAGGGCACCAAGCCTTTACCTGATAGTAGCAGCCGGTTAAGCTCTTCTGCTCTAAAGCGCACACAGCAGGAGCAATTGTCGCATTGGCAAAAGAACCGACGAATGCTGGCATATTCAACGGTTGGTACTCCTGATTACATTGCTCCAGAGGTTCTGCTGAAGAAAGGATATGGAATGGAATGTGACTGGTGGTCCCTTGGTGCAATTATGTATGAAATGCTTGTTGGTTATCCTCCATTCTATTCGGAGGATCCAATGTCAACCTGCAGAAAGATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAGCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAAGCTGCTTTCATACCAGAAGTTAACAGCGAGTTGGATACTCAGAATTTTGAGAAATTTGAGGAGACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAGATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTTGAAATTGTAAATGATGATGAGGTTGCA-GGAATTGCTGAGTTGAAGAAGAAGAGTTCCA-AGTCAAAGCGGCCAACTATCA-AGACATTA-TTTGAGAGCATGGATGAAGAT-GAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCCCCATAAGGAGGGGCAACCTTCATCTCACTCCACCATTCCACCAGAACAATACCAACCTCGACATAAATAGGATAAGGAGGTTTTCAAAAGTAAAACA-CAGATAATTAAAACAAGAAAAAAATTGGTTCCTTTTGATCTTGTTTCCCGTCCAAGCTTTGTAAATTCTAACCGATGCTTTCTCTTCTCAAATTCTTCATACAAAAATCCCTCCTCTGTCCAAAGAGTGGTGTTTGCTGTACGCGGCGATGTTTGTTTGGTTCGCCGTGTGTTTGGGTTACAGCTTCGGTGATGATGGGTCTCAGGTTACAGCTAGTGTATACTTGCTACCATTTCTGACGGGCATGTGTATTGC-AATTAAATTCACCCCTCTTTTGTTCCAAAAAAAAAA] [+] EMBL OSC228 [TTTGCCTTTTGCTGCCCGCTGCCTGCTTTGCCCACGAAAAGACAACCCAACCCGGCGAGTCGTAGCAGAGTAGAGAGAGAAAGAGGAGGAGGAGGAAAAAAAATAAAATTAAGGCAGTTCGTTCGTTCCCCACTTTTGCCTGCTCCAATCGCCGCCCCCCGCCCCGCCGCCTCGTCGCCCGCCCGAGATCCGCTCCGCGTTTGCCTCCCGCCGCCGCCGAGATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGATATCTGATCCAATTGTTAGTTGGATTGACCGTTTCAGAGTGCCTGCAGTTGGCTGCTGGATTGGTCAATATAAGGAAAACCGTTGGTTTCGGAGATGATGCCATTGTGAGTNGGAATGGATTCCGCGAGAAGTTGGTTCCAGAAGTTCCAGCCGAG ] [+] EMBL AK101120 [ CTTTGCCCACGAAAAGACAACCCAACCCGGCGAGTCGTAGCAGAGTAGAGAGAGAAAGAGGAGGAGGAGGAAAAAAAATAAAATTAAGGCAGTTCGTTCGTTCCCCACTTTTGCCTGCTCCAATCGCCGCCCCCCGCCCCGCCGCCTCGTCGCCCGCCCGAGATCCGCTCCGCG TTGCCTCCCGCCGCCGCCGAGATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGATATCTGATCCAATTGTTAGTTGGATTGACCGTTTCAGAGTGCCTGCAGTTGGCTGCTGGATTGGTCAATATAA GAAAACCGTTGGTTTCGGAGATGATGCCATTGTGAGTGGAAATGGATTCCGCGAGAAGTTGGTTCCAGAAGTTCCAGCCGAGGGACAAATCGAAGAGTCCAGCGGTGGCTGCCAGTCATGGAAAGGATCCAGGAAAGCCACCAATTGATGACGCGCCATCTAGTGCAACAAAACAGAGGGTTGCCGCGGCAAAACAGTACATTGAGAATCATTACAAGACCAAGATGAAGTCCCTGCAAGATAGGAAAGAAAGGCGCTGGATGTTGGAGAGGAAACTACAGGATGCAGAGGTTCCTGTAGAAGAGCAAAATAATATTCTAAAGCATTTGGAGAAAAAGGAGACCGAATATATGCGGTTGCAGAGACATAAGATGGGGGTTGAAGATTTTGAACTTTTGACAATTATTGGAAGAGGTGCATTTGGCGAGGTGCGTCTTTGTAGAGAGAAGGCGTCTAAGAATGTATATGCAATGAAAAAGCTTAAGAAATCTGAGATGCTTCGTAGGGGCCAGGTTGAGCATGTCAAAGCTGAAAGAAACCTTCTTGCAGAAGTTGATAGTGCTTTTATAGTCAAGCTCTACTATTCTTTTCAAGATGAAGAATACTTGTATCTCATCATGGAGTACCTTCCTGGTGGTGACATGATGACTTTGCTTATGCGCAAGGACACACTGACAGAAGATGAGGCCAGATTTTACATTGCAGAAACCGTATTAGCAATAGAATCTATTCACAAGCACAGCTACATTCACCGGGATATCAAACCAGACAATCTATTGTTAGATCGCAGTGGTCACTTGAAGCTTTCTGACTTTGGATTGTGTAAACCTTTGGATAGCAGTAATTTTCCAAATTTGAATGAGCCAGATTATACATCTACAAAGGGCACCAAGCCTTTACCTGATAGTAGCAGCCGGTTAAGCTCTTCTGCTCTAAAGCGCACACAGCAGGAGCAATTGTCGCATTGGCAAAAGAACCGACGAATGCTGGCATATTCAACGGTTGGTACTCCTGATTACATTGCTCCAGAGGTTCTGCTGAAGAAAGGATATGGAATGGAATGTGACTGGTGGTCCCTTGGTGCAATTATGTATGAAATGCTTGTTGGTTATCCTCCATTCTATTCGGAGGATCCAATGTCAACCTGCAGAAAGATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAGCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAAGCTGCTTTCATACCAGAAGTTAACAGCGAGTTGGATACTCAGAATTTTGAGAAATTTGAGGAGACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAGATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTTGAAATTGTAAATGATGATGAGGTTGCA GGAATTGCTGAGTTGAAGAAGAAGAGTTCCA AGTCAAAGCGGCCAACTATCA AGACATTA TTTGAGAGCATGGATGAAGAT GAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCCCCATAAGGAGGGGCAACCTTCATCTCACTCCACCATTCCACCAGAACAATACCAACCTCGACATAAATAGGATAAGGAGGTTTTCAAAAGTAAAACA CAGATAATTAAAACAAGAAAAAAATTGGTTCCTTTTGATCTTGTTTCCCGTCCAAGCTTTGTAAATTCTAACCGATGCTTTCTCTTCTCAAATTCTTCATACAAAAATCCCTCCTCTGTCCAAAGAGTGGTGTTTGCTGTACGCGGCGATGTTTGTTTGGTTCGCCGTGTGTTTGGGTTACAGCTTCGGTGATGATGGGTCTCAGGTTACAGCTAGTGTATACTTGCTACCATTTCTGACGGGCATGTGTATTGC AATTAAATTCACCCCTCT ] [+] EMBL AU056325 [ gaaAAAAAAAATAAAATTAAGGCAGTTCGTTCGTTCCCCACTTTTGCCTGCTCCAATCGCCGCCCCCCGCCCCGCCGCCTCGTCGCCCGCCCGAGATCCGCTCCGCG TTGCCTCCCGCCGCCGCCGAGATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGATATCTGATCCAATTGTTAGTTGGATTGACCGTTTCAGAGTGCCTGCAGTTGGCTGCTGGATTGGTCAATATAA GAAAACCGTTGGTTTCGGAGATGATGCCATTGTGAGTGGAAATGGATTCCGCGAGAAGTTGGTTCCAGAAGTTCCAGCCGAGGGACAAATCGAAGAGTCCAGCGGTGGCTGCCAGT ] [+] EMBL CA755253 [ CATTGTGAGTGGAAATGGATTCCGCGAGAAGTTGGTTCCAGAAGTTCCAGCCGAGGGACAAATCGAAGAGTCCAGCGGTGGCTGCCAGTCATGGAAAGGATCCAGGAAAGCCACCAATTGATGACGCGCCATCTAGTGCAACAAAACAGAGGGTTGCCGCGGCAAAACAGTACATTGAGAATCATTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAAAGGCGCTGGATGTTGGAGAGGAAACTACAGGATGCAGAGGTTCCTGTAGAAGAGCAAAATAATATTCTAAAGCATTTGGAGAAAAAGGAGACCGAATATATGCGGTTGCAGAGACATAAGATGGGGGTTGAAGATTTTGAACTTTTGACAATTATTGGAAGAGGTGCATTTGGCGAGGTGCGTCTTTGTAGAGAGAAGGCGTCTAAGAATGTATATGCAATGAAAAAGCTTAAGAAATCTGAGATGCTTCGTAGGGGCCAGGTTGAGCATGTCANAGCTGANAGAAACCTTCTTGCAGAAGTTGATAGTGCTTTTATAGTCAAGCTCTACTATTCTTTTCAAGATGAAGAATACTTGTATCTCATC ] [-] EMBL CB628791 [ CTTCTATGTAATGTTGAGCAGAGACTT GAACAAAAGGAGCCCATGAGATAAAAGCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAAGCTGCTTTCATACCAGAAGTTAACAGCGAGTTGGATACTCAGAATTTTGAGAAATTTGAGGAGACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAGATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTTGAAATTGTAAATGATGATGAGGTTGCA GGAATTGCTGAGTTGAAGAAGAAGAGTTCCA AGTCAAAGCGGCCAACTATCA AGACATTA TTTGAGAGCATGGATGAAGAT GAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCCCCGTAAGGAGGGGCAACCTTCATCTCACTCCACCATTCCACCAGAACAATACCAACCTCGACATAAATAGGATAAGGAGGTTTTCAAAAGTAAAACA CAGATAATTAAAACAAGAAAAAAATTGGTTCCTTTTGATCTTGTTTCCCGTCCAAGCTTTGTAAATTCTAACCGATGCTTTCTCTTCTCAAATTCTTCATACAAAAATCCCTCCTCTGTCCAAAGAGTGGTGTTTGCTGTACGCGGCGATGTTTGTTTGGTTCGCCGTGTGTTTGGGTTACAGCTTCGGTGATGATGGGTCTCAGGTTACAGCTAGTGTATACTTGCTACCATTTCTGACGGGCATGTGTGGTGC A ] [+] EMBL BQ908647 [ ATAAGAATTTTGAAATTGTAAATGATGATGAGGTT CACGGAATTGCTGAGTTGAAGAAGAAGAGTTCCACAGTCCAAGCGGCCCACTATCACAGACNTTA TTTGAGAGCATGGATGAAGAT GAGCCTGTTCAAGGAAGTTTNTTAAATATGTTGCCCCGTAAGGAGGGGCAACCTTCATCTCACTCCACCATTCCACCAGAACNATACCCACCTCGACATAAATAGGATAAGGAGGTTTTCAAAAGTAAAACACCAGATAATTAAAACCAGAAAAAAATTGGTTCCTTTTGATCTTGTTTCCCGTCCCAGCTTTGTAAATTCTAACCGATGCTTTCTCTTCTCAAATTCTTCATACCAAAATCCCTCCTCTGTCCCAAGAGTGGTGTTTGCTGTACGCGGCGATGTTTGTTTGGTTCCCCGTGTGTTTGGGTTACAGCTTCGGTGATGATGGGTCTCAGGTTACAGCTAGTGTATACTTGCTACCCTTTCTGACGGGCATGTGTATTCCNNATTAAATTCNCCCCTCTTTTGTTCCAAAAAAAAAA] [+] EMBL AU101305 [ anCTATCA AGACATTATTTTGAGAGCATGGATGAAGATGGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCCCCATAAGGAGGGGCAACCTTCATCTCACTCCACCATTCCACCAGAACAATNCCAACCTCGACATAAATAGGATAAGGAGGTTTTCAAAAGTAAAACA CAGATAATTAAAACAAGAAAAAAATTGGTTCCTTTTGATCTTGTTTCCCGTCCAAGCTTTGTAAATTCTAACCGATGCTTTCTCTTCTCAAATTCTTCATACAAAAATCCCTCCTCTGTCCAAAGAGTGGTGTTTGCTGTACGCGGCGATGTTTGTTTGGTTCGCCGTGTGTTTGGGTTACAGCTTCGGTGATGATGGGTCTCAGGTTACAGCTAGTGTATACTTGCTACCATTTCTGACGGGCATGTGTATTGC AATTAAATTCAaaa ] [+] EMBL C98785 [ AATTGGTTCCTTTTGANCTTGTTTCCCGTCTAAGCTTTGTAAATTCNAACCGATGCTTNCTCNTCTCAAATTCTTCATACAAAAATCCCTCCTCTGTCCAAAGAGTGGTGTTTGCTGTACGCGGCGATGTTTGTTTGGTTCGCCGTGTGTTTGGGTTACAGCTTCGGTGATGATGGGTNTCAGGTTACAGCTNGTGTATACTTGCTNCCATTTCTGACGGGCATGTGTNTTGC NATTAATTTaaaaaaa ] consensusID : consensus_13202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence [GCAGCTTTAATGTACTTTGCCCACAGTTTTTTTTTAATTTGTTATCTAGAGGGTAATTGTTTGGAATTTTCTATATTCAGTCTAAGCAAACCTCACCCAACTTGCAAGAAGACAACCTTATGCCAAATTTTATCGCACAATCAACACAGCAGAATGCAGTATTTGCCATAGTAATGTACTAGTGACCTGCATGTAATCAAATTATTATGTGGGTCAGTGGCTAGATGATGATGGTAGCAACTGGTCCTCGGAGCTCAGCCTATACAGTTTGTGGACTCCAATAATCACGCATGACCTTGGTTTTTCCTTATGAAGTGCCCTATAGTGGGAAAATTTTGTGGAAGGCTGTATTTCCCAATGCTTTCAGCTAAGCTTGTTTACTCCAGTACAGGAAATACTCATGTAGCTTCATGAGCATGTGTTTCATCCAATTTTATTTTCTATTCTTCATTTGCAGATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAGCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAAGCTGCTTTCATACCAGAAGTTAACAGCGAGTTGGATACTCAGAATTTTGAGAAATTTGAGGAGACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAGATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAAT] [+] EMBL CB624230 [GCAGCTTTAATGTACTTTGCCCACAGTTTTTTTTTAATTTGTTATCTAGAGGGTAATTGTTTGGAATTTTCTATATTCAGTCTAAGCAAACCTCACCCAACTTGCAAGAAGACAACCTTATGCCAAATTTTATCGCACAATCAACACAGCAGAATGCAGTATTTGCCATAGTAATGTACTAGTGACCTGCATGTAATCAAATTATTATGTGGGTCAGTGGCTAGATGATGATGGTAGCAACTGGTCCTCGGAGCTCAGCCTATACAGTTTGTGGACTCCAATAATCACGCATGACCTTGGTTTTTCCTTATGAAGTGCCCTATAGTGGGAAAATTTTGTGGAAGGCTGTATTTCCCAATGCTTTCAGCTAAGCTTGTTTACTCCAGTACAGGAAATACTCATGTAGCTTCATGAGCATGTGTTTCATCCAATTTTATTTTCTATTCTTCATTTGCAGATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAGCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAAGCTGCTTTCATACCAGAAGTTAACAGCGAGTTGGATACTCAGAATTTTGAGAAATTTGAGGAGACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAGATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAAT] consensusID : consensus_13202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [GCAGAAAGGCATGTACTTTGCCCACAGTTTTTTTTTAATTTGTTATCTAGAGGGTAATTGTTTGGAATTTTCTATATTCAGTCTAAGCAAACCTCACCCAACTTGCAAGAAGACAACCTTATGCCAAATTTTATCGCACAATCAACACAGCAGAATGCAGTATTTGCCATAGTAATGTACTAGTGACCTGCATGTAATCAAATTATTATGTGGGTCAGTGGCTAGATGATGATGGTAGCAACTGGTCCTCGGAGCTCAGCCTATACAGTTTGTGGACTCCAATAATCACGCATGACCTTGGTTTTTCCTTATGAAGTGCCCTATAGTGGGAAAATTTTGTGGAAGGCTGTATTTCCCAATGCTTTCAGCTAAGCTTGTTTACTCCAGTACAGGAAATACTCATGTAGCTTCATGAGCATGTGTTTCATCCAATTTTATTTTCTATTCTTCATTTGCAGATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAGCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAAGCTGCTTTCATACCAGAAG] [+] EMBL CB624231 [GCAGAAAGGCATGTACTTTGCCCACAGTTTTTTTTTAATTTGTTATCTAGAGGGTAATTGTTTGGAATTTTCTATATTCAGTCTAAGCAAACCTCACCCAACTTGCAAGAAGACAACCTTATGCCAAATTTTATCGCACAATCAACACAGCAGAATGCAGTATTTGCCATAGTAATGTACTAGTGACCTGCATGTAATCAAATTATTATGTGGGTCAGTGGCTAGATGATGATGGTAGCAACTGGTCCTCGGAGCTCAGCCTATACAGTTTGTGGACTCCAATAATCACGCATGACCTTGGTTTTTCCTTATGAAGTGCCCTATAGTGGGAAAATTTTGTGGAAGGCTGTATTTCCCAATGCTTTCAGCTAAGCTTGTTTACTCCAGTACAGGAAATACTCATGTAGCTTCATGAGCATGTGTTTCATCCAATTTTATTTTCTATTCTTCATTTGCAGATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAGCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAAGCTGCTTTCATACCAGAAG] consensusID : consensus_13202#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 424 fasta sequence [AAAAAAAAATAAAATTAAGGCAGTTCGTTCGTTCCCCANTTTTGCCTGCTCCAATCGCCGCCCCCCGCCCCGCCGCCTCGTCGCCCGCCCGAGATCCGNTCCGNGTTGCCTCCCGCCGCCGCCGAGGTGAGCGCGCGCTTCCCCGGACGACGCGGNTCCGGCCGGTGGTTTCGCTGTCTGCGATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGATATCTGATCCAATTGTTAGTTGGATTGACCGTTTCAGAGTGCCTGCAGTTGGCTGCTGGATTGGTCAATATAAGAAAACCGTTGGTTTCGGAGATGATGCCATTGTGAGTGGAAATGGATTCCGCGAGAAGTTGGTTCCAGAAGTTCCAGCCGAGGGACAAATCGAAGAGTCCAGCGGTGGCTGCCAGTCA] [+] EMBL AU172640 [AAAAAAAAATAAAATTAAGGCAGTTCGTTCGTTCCCCANTTTTGCCTGCTCCAATCGCCGCCCCCCGCCCCGCCGCCTCGTCGCCCGCCCGAGATCCGNTCCGNGTTGCCTCCCGCCGCCGCCGAGGTGAGCGCGCGCTTCCCCGGACGACGCGGNTCCGGCCGGTGGTTTCGCTGTCTGCGATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGATATCTGATCCAATTGTTAGTTGGATTGACCGTTTCAGAGTGCCTGCAGTTGGCTGCTGGATTGGTCAATATAAGAAAACCGTTGGTTTCGGAGATGATGCCATTGTGAGTGGAAATGGATTCCGCGAGAAGTTGGTTCCAGAAGTTCCAGCCGAGGGACAAATCGAAGAGTCCAGCGGTGGCTGCCAGTCA] [+] EMBL CF304594 [ gcTCCGCGTTGCCTCCCGCCGCCGCCGAGGTGAGCGCGCGCTTCCCCGGACGACGCGGCTCCGGCCGGTGGTTTCGCTGTCTGCGATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGATATCTGATCCAATTGTTAGTTGGATTGACCGTTTCAGAGTGCCTGCAGTTGGCTGCTGGATTGGTCAATATAAGAAAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13202#0 TTTGCCTTTTGCTGCCCGCTGCCTGCTTTGCCCACGAAAAGACAACCCAACCCGGCGAGT 60 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 -------------------------------------------------GCAGCTTTA-A 10 consensus_13202#2 -------------------------------------------------GCAGAAAGGCA 11 consensus_13202#0 CGTAGCAGAGTAGAGAGAGAAAGAGGAGGAGGAGGAAAAAAAATAAAATTAAGGCAGTTC 120 consensus_13202#3 ----------------------------------AAAAAAAAATAAAATTAAGGCAGTTC 26 consensus_13202#1 TGTACTTTGCCCACAGTTTTTTTTTAATTTGTTATCTAGAGGGTAATTGTTTGGAATTTT 70 consensus_13202#2 TGTACTTTGCCCACAGTTTTTTTTTAATTTGTTATCTAGAGGGTAATTGTTTGGAATTTT 71 * * *** * ** * ** consensus_13202#0 GTTCGTTC--CCCACTTTTGCCTGCTCCAA-TCGCCGCCCCCCGCCCCGCCGCC-----T 172 consensus_13202#3 GTTCGTTC--CCCANTTTTGCCTGCTCCAA-TCGCCGCCCCCCGCCCCGCCGCC-----T 78 consensus_13202#1 CTATATTCAGTCTAAGCAAACCTCACCCAACTTGCAAGAAGACAACCTTATGCCAAATTT 130 consensus_13202#2 CTATATTCAGTCTAAGCAAACCTCACCCAACTTGCAAGAAGACAACCTTATGCCAAATTT 131 * *** * * *** **** * ** * ** *** * consensus_13202#0 CGTCGCCCGCCCGAGATC-CGCTCCGCGTTGCCTCCCGCCGCCGCCGAG----------- 220 consensus_13202#3 CGTCGCCCGCCCGAGATC-CGNTCCGNGTTGCCTCCCGCCGCCGCCGAGGTGAGCGCGCG 137 consensus_13202#1 TATCGCACAATCAACACAGCAGAATGCAGTATTTGCCATAGTAATGTAC-TAGTGACCTG 189 consensus_13202#2 TATCGCACAATCAACACAGCAGAATGCAGTATTTGCCATAGTAATGTAC-TAGTGACCTG 190 **** * * * * * * * * ** * * consensus_13202#0 ---------------------------------------------ATAGAGGCATCGTTC 235 consensus_13202#3 CTTCCCCGGACGACGCGGNTCCGGCCGGTGGTTTCGCTGTCTGCGATAGAGGCATCGTTC 197 consensus_13202#1 CATGTAATCAAATTATTATGTGGGTCAGTGGCTA-GATGATGATGGTAGCAAC-TGGTCC 247 consensus_13202#2 CATGTAATCAAATTATTATGTGGGTCAGTGGCTA-GATGATGATGGTAGCAAC-TGGTCC 248 *** * * ** * consensus_13202#0 CCAGCATTGGGTTC-CACGGAGAATTG---CCAATTTGGATATCTGATCC-AATTGTTAG 290 consensus_13202#3 CCAGCATTGGGTTC-CACGGAGAATTG---CCAATTTGGATATCTGATCC-AATTGTTAG 252 consensus_13202#1 TCGGAGCTCAGCCTATACAGTTTGTGGACTCCAATAATCACGCATGACCTTGGTTTTTCC 307 consensus_13202#2 TCGGAGCTCAGCCTATACAGTTTGTGGACTCCAATAATCACGCATGACCTTGGTTTTTCC 308 * * * * ** * * * ***** * *** * ** ** consensus_13202#0 TT--GGATTGACCGTTTCAGAGTGCCTGCAGTTGGCTGCTGGATTGGTCAATA---TAAG 345 consensus_13202#3 TT--GGATTGACCGTTTCAGAGTGCCTGCAGTTGGCTGCTGGATTGGTCAATA---TAAG 307 consensus_13202#1 TTATGAAGTGCCCTATAGTGGGAAAATTTTGTGGAAGGCTGTATTTCCCAATGCTTTCAG 367 consensus_13202#2 TTATGAAGTGCCCTATAGTGGGAAAATTTTGTGGAAGGCTGTATTTCCCAATGCTTTCAG 368 ** * * ** ** * * * * ** * **** *** **** * ** consensus_13202#0 --AAAACCGTTGGTTTCGG---AGATGATGCCATTGTGA----GTGGAAATGGATTCCGC 396 consensus_13202#3 --AAAACCGTTGGTTTCGG---AGATGATGCCATTGTGA----GTGGAAATGGATTCCGC 358 consensus_13202#1 CTAAGCTTGTTTACTCCAGTACAGGAAATACTCATGTAGCTTCATGAGCATGTGTTTCAT 427 consensus_13202#2 CTAAGCTTGTTTACTCCAGTACAGGAAATACTCATGTAGCTTCATGAGCATGTGTTTCAT 428 ** *** * * * ** ** * *** ** *** ** * consensus_13202#0 GAGAAGTTGGTTCCAGAAGTTCCAGCCGAGGG--ACAAATCGAAGAGTCCAGCGGTGGCT 454 consensus_13202#3 GAGAAGTTGGTTCCAGAAGTTCCAGCCGAGGG--ACAAATCGAAGAGTCCAGCGGTGGCT 416 consensus_13202#1 CC-AATTTTATTTTCTATTCTTCATTTGCAGATTGTAAACTGGAGAAGTCACTTGAAATT 486 consensus_13202#2 CC-AATTTTATTTTCTATTCTTCATTTGCAGATTGTAAACTGGAGAAGTCACTTGAAATT 487 ** ** ** * * ** * * *** * *** ** * * consensus_13202#0 GCC--AGTCATGGAAAGGATCCAGGAAAGCCACCAATTGATGACGCGCCATCTAGTGCAA 512 consensus_13202#3 GCC--AGTCA-------------------------------------------------- 424 consensus_13202#1 CCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAA 546 consensus_13202#2 CCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAA 547 ** * consensus_13202#0 CAAAACAGAGGGTTGCCGCGGCAAAACAGTACATTGAGAATCATTACAAGACCAAGATGA 572 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 TGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAGCACATCCATGGTTTAG 606 consensus_13202#2 TGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAGCACATCCATGGTTTAG 607 consensus_13202#0 AGTCCCTGCAAGATAGGAAAGAAAGGCGCTGGATGTTGGAGAGGAAACTACAGGATGCAG 632 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 AGGTCTCCCATGGGAAAGATTGTATCAGATGAAAGCTGCTTTCATACCAGAAGTTAACAG 666 consensus_13202#2 AGGTCTCCCATGGGAAAGATTGTATCAGATGAAAGCTGCTTTCATACCAGAAG------- 660 consensus_13202#0 AGGTTCCTGTAGAAGAGCAAAATAATATTCTAAAGCATTTGGAGAAAAAGGAGACCGAAT 692 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 CGAGTTGGATACTCAGAATTTTGAGAAATTTGAGGAGACCGGAGCACAAATTCAAAGTTC 726 consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 ATATGCGGTTGCAGAGACATAAGATGGGGGTTGAAGATTTTGAACTTTTGACAATTATTG 752 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ATCTAAGTCAGGTCCATGGAGAAAGATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTA 786 consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 GAAGAGGTGCATTTGGCGAGGTGCGTCTTTGTAGAGAGAAGGCGTCTAAGAATGTATATG 812 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 TACATATAAGAAT----------------------------------------------- 799 consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 CAATGAAAAAGCTTAAGAAATCTGAGATGCTTCGTAGGGGCCAGGTTGAGCATGTCAAAG 872 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 CTGAAAGAAACCTTCTTGCAGAAGTTGATAGTGCTTTTATAGTCAAGCTCTACTATTCTT 932 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 TTCAAGATGAAGAATACTTGTATCTCATCATGGAGTACCTTCCTGGTGGTGACATGATGA 992 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 CTTTGCTTATGCGCAAGGACACACTGACAGAAGATGAGGCCAGATTTTACATTGCAGAAA 1052 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 CCGTATTAGCAATAGAATCTATTCACAAGCACAGCTACATTCACCGGGATATCAAACCAG 1112 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 ACAATCTATTGTTAGATCGCAGTGGTCACTTGAAGCTTTCTGACTTTGGATTGTGTAAAC 1172 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 CTTTGGATAGCAGTAATTTTCCAAATTTGAATGAGCCAGATTATACATCTACAAAGGGCA 1232 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 CCAAGCCTTTACCTGATAGTAGCAGCCGGTTAAGCTCTTCTGCTCTAAAGCGCACACAGC 1292 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 AGGAGCAATTGTCGCATTGGCAAAAGAACCGACGAATGCTGGCATATTCAACGGTTGGTA 1352 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 CTCCTGATTACATTGCTCCAGAGGTTCTGCTGAAGAAAGGATATGGAATGGAATGTGACT 1412 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 GGTGGTCCCTTGGTGCAATTATGTATGAAATGCTTGTTGGTTATCCTCCATTCTATTCGG 1472 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 AGGATCCAATGTCAACCTGCAGAAAGATTGTAAACTGGAGAAGTCACTTGAAATTCCCTG 1532 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 AAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTG 1592 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 AGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAGCACATCCATGGTTTAGAGGTC 1652 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 TCCCATGGGAAAGATTGTATCAGATGAAAGCTGCTTTCATACCAGAAGTTAACAGCGAGT 1712 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 TGGATACTCAGAATTTTGAGAAATTTGAGGAGACCGGAGCACAAATTCAAAGTTCATCTA 1772 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 AGTCAGGTCCATGGAGAAAGATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACAT 1832 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 ATAAGAATTTTGAAATTGTAAATGATGATGAGGTTGCAGGAATTGCTGAGTTGAAGAAGA 1892 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 AGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGAGAGCATGGATGAAGATG 1952 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 AGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCCCCATAAGGAGGGGCAACCTTCATCTC 2012 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 ACTCCACCATTCCACCAGAACAATACCAACCTCGACATAAATAGGATAAGGAGGTTTTCA 2072 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 AAAGTAAAACACAGATAATTAAAACAAGAAAAAAATTGGTTCCTTTTGATCTTGTTTCCC 2132 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 GTCCAAGCTTTGTAAATTCTAACCGATGCTTTCTCTTCTCAAATTCTTCATACAAAAATC 2192 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 CCTCCTCTGTCCAAAGAGTGGTGTTTGCTGTACGCGGCGATGTTTGTTTGGTTCGCCGTG 2252 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 TGTTTGGGTTACAGCTTCGGTGATGATGGGTCTCAGGTTACAGCTAGTGTATACTTGCTA 2312 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 CCATTTCTGACGGGCATGTGTATTGCAATTAAATTCACCCCTCTTTTGTTCCAAAAAAAA 2372 consensus_13202#3 ------------------------------------------------------------ consensus_13202#1 ------------------------------------------------------------ consensus_13202#2 ------------------------------------------------------------ consensus_13202#0 AA 2374 consensus_13202#3 -- consensus_13202#1 -- consensus_13202#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||