cluster # 1321

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Oryza sativa
cluster # 1321 cluster # 1321 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1321#0 length = 385 sequences # 1

consensus_1321#1 length = 192 sequences # 1

consensusID : consensus_1321#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [CTGGGTCATCGCTGTCCCTCCCTGATTTGATCTGGGCGGCACCTACAGCTATGCGCGTGTGCCGGCAGGTTTCTGGGTCCAGGATTTATTCGAACTCAGCCGCAACCCGTACGACAAGCTAGGCCATTTCATACAGGGCGTTACACCTGCGCTGCTCGCTCGCGAAATACTGCTGCGCTTGCGTTATGTAGCGCCCGGCAAAATGCTCGGTTTCCTTTCACTCTGTGTGGCACTGGCGTTCAGCGCGTTCTACGAACTCATTGAATGGTGGGTTGCGCTGCTCGCAGGGCAAGGCGCGGATGATTTCCTCGGCACGCAGGGGGACCCCTGGGACACCCAATCGGACATGTTCATGGCGTTGCTAGGCGCATTGCTGTCGGTCAGC]

[+] EMBL BI305371             [CTGGGTCATCGCTGTCCCTCCCTGATTTGATCTGGGCGGCACCTACAGCTATGCGCGTGTGCCGGCAGGTTTCTGGGTCCAGGATTTATTCGAACTCAGCCGCAACCCGTACGACAAGCTAGGCCATTTCATACAGGGCGTTACACCTGCGCTGCTCGCTCGCGAAATACTGCTGCGCTTGCGTTATGTAGCGCCCGGCAAAATGCTCGGTTTCCTTTCACTCTGTGTGGCACTGGCGTTCAGCGCGTTCTACGAACTCATTGAATGGTGGGTTGCGCTGCTCGCAGGGCAAGGCGCGGATGATTTCCTCGGCACGCAGGGGGACCCCTGGGACACCCAATCGGACATGTTCATGGCGTTGCTAGGCGCATTGCTGTCGGTCAGC]




>consensus_1321#0
CTGGGTCATCGCTGTCCCTCCCTGATTTGATCTGGGCGGCACCTACAGCTATGCGCGTGT
GCCGGCAGGTTTCTGGGTCCAGGATTTATTCGAACTCAGCCGCAACCCGTACGACAAGCT
AGGCCATTTCATACAGGGCGTTACACCTGCGCTGCTCGCTCGCGAAATACTGCTGCGCTT
GCGTTATGTAGCGCCCGGCAAAATGCTCGGTTTCCTTTCACTCTGTGTGGCACTGGCGTT
CAGCGCGTTCTACGAACTCATTGAATGGTGGGTTGCGCTGCTCGCAGGGCAAGGCGCGGA
TGATTTCCTCGGCACGCAGGGGGACCCCTGGGACACCCAATCGGACATGTTCATGGCGTT
GCTAGGCGCATTGCTGTCGGTCAGC

consensusID : consensus_1321#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence

                              [AATCGCTCGGTGTCTCCTTTGCACTGCTGTGATGGCACTCGGCGTTGCAGCGCGTACTACGAACTCATTGAATGGTGGGTTGCGCTGCTCGCATGGCTAAGTGCGGATGATTTCCTCGGCACGCAGGGGGACCCCTGGGACACCCAATCGGACATGTTCATGGGCGTTCTAAGCGCATTGCTGTCAGTCAGG]

[+] EMBL BI305286             [AATCGCTCGGTGTCTCCTTTGCACTGCTGTGATGGCACTCGGCGTTGCAGCGCGTACTACGAACTCATTGAATGGTGGGTTGCGCTGCTCGCATGGCTAAGTGCGGATGATTTCCTCGGCACGCAGGGGGACCCCTGGGACACCCAATCGGACATGTTCATGGGCGTTCTAAGCGCATTGCTGTCAGTCAGG]




>consensus_1321#1
AATCGCTCGGTGTCTCCTTTGCACTGCTGTGATGGCACTCGGCGTTGCAGCGCGTACTAC
GAACTCATTGAATGGTGGGTTGCGCTGCTCGCATGGCTAAGTGCGGATGATTTCCTCGGC
ACGCAGGGGGACCCCTGGGACACCCAATCGGACATGTTCATGGGCGTTCTAAGCGCATTG
CTGTCAGTCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1321#0      CTGGGTCATCGCTGTCCCTCCCTGATTTGATCTGGGCGGCACCTACAGCTATGCGCGTGT 60
consensus_1321#1      ------------------------------------------------------------
                                                                                  

consensus_1321#0      GCCGGCAGGTTTCTGGGTCCAGGATTTATTCGAACTCAGCCGCAACCCGTACGACAAGCT 120
consensus_1321#1      ------------------------------------------------------------
                                                                                  

consensus_1321#0      AGGCCATTTCATACAGGGCGTTACACCTGCGCTGCTCGCTCGCGAAATACTGCTGCGCTT 180
consensus_1321#1      ------------------------------------------------------------
                                                                                  

consensus_1321#0      GCGTTATGTAGCGCCCGGCAAAATGCTCGGT---TTCCTTTCACT-CTGTG-TGGCACT- 234
consensus_1321#1      --------------------AATCGCTCGGTGTCTCCTTTGCACTGCTGTGATGGCACTC 40
                                          **  *******   * * ** **** ***** ******* 

consensus_1321#0      GGCGTT-CAGCGCGTTCTACGAACTCATTGAATGGTGGGTTGCGCTGCTCGCAGGGCAAG 293
consensus_1321#1      GGCGTTGCAGCGCGTACTACGAACTCATTGAATGGTGGGTTGCGCTGCTCGCATGGCTAA 100
                      ****** ******** ************************************* *** * 

consensus_1321#0      GCGCGGATGATTTCCTCGGCACGCAGGGGGACCCCTGGGACACCCAATCGGACATGTTCA 353
consensus_1321#1      GTGCGGATGATTTCCTCGGCACGCAGGGGGACCCCTGGGACACCCAATCGGACATGTTCA 160
                      * **********************************************************

consensus_1321#0      TGGCGTTGCTAGGCGCATTGCTGTCGGTCAGC 385
consensus_1321#1      TGGGCGTTCTAAGCGCATTGCTGTCAGTCAGG 192
                      ***   * *** ************* *****