These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 716 fasta sequence [TCGCAGTTGGAATCCTCCACCCAAAGCAGAAGCCTCCGCCGCCGCAGCGCCGCTACTCTTGCATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAA-CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTATTTGTGGTTCAGCAAAAAAAAAAAAAA] [+] EMBL CF282023 [TCGCAGTTGGAATCCTCCACCCAAAGCAGAAGCCTCCGCCGCCGCAGCGCCGCTACTCTTGCATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCG CGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAA CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCT CCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGC CAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTG ] [+] EMBL CF305266 [ CAGTTGGAATCCTCCACCCAAAGCAGAAGCCTCCGCCGCCGCAGCGCCGCTACTCTTGCATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAA CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTC ] [+] EMBL AK059190 [ AGAAGCCTCCGCCGCCGCAGCGCCGCTACTCTTGCATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAA CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTA ] [+] EMBL CF291257 [ ATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAA CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTNTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATT ] [+] EMBL CF281485 [ ATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCCCAGAACAA CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACC ] [-] EMBL CF281486 [ ACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCCCAGAACAACCCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTAATAAATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTAAAAAAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGTGCATATCTCCAAaaaa ] [+] EMBL CF329296 [ GTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTATTT ] [-] EMBL CF329297 [ TATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTATTTGTGGTTCAGCAAAAAAAAAAAAAA] [+] EMBL C98227 [ cgGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTATTTGTGGTTCAAAAAAAAAAAAAAAAA] consensusID : consensus_13268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 643 fasta sequence [GGCCGCTCCACATCAGAATGGGAGAGTGCGTCCGCCGCCATGTCTCAGAACAACCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTAATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTC-AACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAA-CAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCC-G-TGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTGTTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTGCAATGGTTGTATTTGTGGTTCAGCAGTGTTGGACTTGATAATCTTTTTGCTGCAAAAAAAAAAAAAA] [+] EMBL BI305584 [GGCCGCTCCACATCAGAATGGGAGAGTGCGTCCGCCGCCATGTCTCAGAACAACCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTAATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTC AACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAA CAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCC G TGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTGTTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTGCAATGGTTGTATTTGTGGTTCAGCAGTGTTGGACTTGATAATCTTT ] [+] EMBL CB967470 [ CATCAGAATGGGAGAGTGCGTCCGCCGCCATGTCTCAGAACAACCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTAATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTC AACATGGTGCTCGAGGACGTTACTGAGTATGAATta ] [-] EMBL CF282022 [ TGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACCAATATAGCTATTTTGGTTCCTGGTGGTTCT CCCCAGATGTGGCATAAGCAAGCACTTCCTGNTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTTTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTTTTTTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTATTTGTGGTTCAGCAGTGTTGGACTTGATAATCTTTTTGCTGCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13268#0 TCGCAGTTGGAATCCTCCACCCAAAGCAGAAGCCTCCGCCGCCGCAGCGCCGCTACTCTT 60 consensus_13268#1 ------------------------------------------------------------ consensus_13268#0 GCATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCG 120 consensus_13268#1 -------------------------------------GGCCGCT-CCACATCAGAATG-- 20 ****** **** ** * consensus_13268#0 CCGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAACCCCTCCCAGCTCCTCCCCTCAGAG 180 consensus_13268#1 --GGAGAGTGCGTCCGCCGCCATGTCTCAGAACAACCCCTCCCAGCTCCTCCCCTCAGAG 78 ****** *************************************************** consensus_13268#0 CTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTC 240 consensus_13268#1 CTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTAATTATGAAGGGTGACAAGGAGCTC 138 *********************************** ************************ consensus_13268#0 GTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAG 300 consensus_13268#1 GTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAG 198 ************************************************************ consensus_13268#0 TATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGC 360 consensus_13268#1 TATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGC 258 ************************************************************ consensus_13268#0 AACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACT 420 consensus_13268#1 AACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACT 318 ************************************************************ consensus_13268#0 TCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAAT 480 consensus_13268#1 TCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAAT 378 ************************************************************ consensus_13268#0 GTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTA 540 consensus_13268#1 GTGTTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTA 438 ** ********************************************************* consensus_13268#0 CCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCT 600 consensus_13268#1 CCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCT 498 ************************************************************ consensus_13268#0 GTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGA 660 consensus_13268#1 GTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGA 558 ************************************************************ consensus_13268#0 TAATGGAGAGCATATCTACAATTGTTGTATTTGTGGTTCAGCAAAAAAAAAAAAAA---- 716 consensus_13268#1 TAATGGAGAGCATATCTGCAATGGTTGTATTTGTGGTTCAGCAGTGTTGGACTTGATAAT 618 ***************** **** ******************** * * consensus_13268#0 ------------------------- consensus_13268#1 CTTTTTGCTGCAAAAAAAAAAAAAA 643 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||