These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1484 fasta sequence [TTTTTTTAAAACTGTGAAACCATTCATCGTATAAAACTCA-AATGCTG-TGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTACAAAAAAAGACGAACGATA-TG-TGTGCA-TTGGCTG-TTAAAAACCGAAACGCCTGCTTCACCGCTTAATTTGTATCATCTCCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAACCATGGGCTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGCGG-GGACTCCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTGGTTAACATTCG-TTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCG-TGACCGA-CATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCTGAAACAGAAAAGAACAATGAGCAGTGCTGATGAAACAAGCATGCAGCATTAGTAGCTTGTTAATACAATTGCTAAATTAGTTGAAGCATACCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAAACCCAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCNCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACCTGAACAAATAAATAACAAAAAACAAACTCTTTTATCATTCATTAGAATAAAGACAATCGAGAACTAACAAAGAGTATCTAGAGGGACTTACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCG] [-] EMBL BM037797 [TTTTTTTAAAACTGTGAAACCATTCATCGTATAAAACTCA AATGCTG TGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTACAAAAAAAGACGAACGATA TG TGTGCA TTGGCTG TTAAAAACCGAAACGCCTGCTTCACCGCTTAATTTGTATCATCTCCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAACCATGGGCTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGCGG GGACTCCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTGGTTAACATTCG TTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCG TGACCGA CATGGTTGCTA ] [+] EMBL CB626927 [ AAACTGTGAAACCATTCATCGTATAAAACTCACACTGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTACAAAAAAAGACGAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAACGCCTGCTTCACCGCTTAATTTGTATCATCTCCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAACCATGGGCTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGCGGCGGACTCCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTGGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCGACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCTGAAACAGAAAAGAACAATGAGCAGTGCTGATGAAACAAGCATGCAGCATTAGTAGCTTGTTAATACAATTGCTAAATTAGTTGAAGCATACCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAAACCCAGCAAAGCAAAA ] [-] EMBL CB677671 [ CAAAGACATAACTCTCGACAAGGCTGTGNCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCNCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACCTGAACAAATAAATAACAAAAAACAAACTCTTTTATCATTCATTAGAATAAAGACAATCGAGAACTAACAAAGAGTATCTAGAGGGACTTACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCG] consensusID : consensus_13276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1372 fasta sequence [AAATAAAACTGTGAAACCATTCATCGTATAAAAAT-CAAATGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTAC--AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA-CGCCTGCTTCACCGCTTAATTTGTATCATCT-CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCGAAGCCGACGACGACGAGTCGAGGGAGAGGTTGGCGGCTGTTAGGTGCGGTGGTGGACTAG] [-] EMBL AK102376 [AAATAAAACTGTGAAACCATTCATCGTATAAAAAT CAAATGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTAC AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA CGCCTGCTTCACCGCTTAATTTGTATCATCT CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCGAAGCCGACGACGACGAGTCGAGGGAGAGGTTGGCGGCTGTTAGGTGCGGTGGTGGACTAG] [+] EMBL CB659874 [ AAACTGTGAAACCATTCATCGTATAAAAAT CACATGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTAC AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA CGCCTGCTTCACCGCTTAATTTGTATCATCT CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATA ] [-] EMBL CA764776 [ TGTGAANCCATTCATCGTATAAANCTCCAAATGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTACAAAAAAAAAGACGACCGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAACCGCCTGCTTCACCGCTTAATTTGTATCATCTCCCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAACCATGGGC TATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGCGGCGGACTCCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTGGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCGACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCGAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCAT ] [-] EMBL AU082924 [ ttttTATAAAAAT CAAATGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTAC AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA CGCCTGCTTCACCGCTTAATTTGTATCATCT CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCG ANGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGNTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCAC ] [+] EMBL CB677672 [ AAAT CAAATGCTGTTGTCATTTCCCTGATAGGTATTCCCTTGTTACAATGTAC AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA CGCCTGCTTCACCGCTTAATTTGTATCATCT CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGT ATTCT ] [-] EMBL AK061397 [ aaGCTG TGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTAC AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA CGCCTGCTTCACCGCTTAATTTGTATCATCT CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCGAA ] [-] EMBL CB659871 [ GTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCGAAGC ] [-] EMBL C71880 [ GTNTCGAGGCAGANCCGGCACTGGAACTGGTCCCCGGCCNCGGCCTCGATNTCGATCTCCGACGGCGGTGGGATNAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTNCCATNCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGANCGAATCGAAGCCG ] consensusID : consensus_13276#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence [GTTATAGCAAATAGAAGCAGAGGTGCTTGTTTCGAAGGACACATGCCTCGAATAAGTCACAAGCAAACTATAACATATTCAAGTGACAACAATTACCATGCATTAAACAGGGAAAAGTAGCTTGCTCTTTCGTATTCGATACATATATCATTCACTCTCATATCACATTTCTACACTTAAATTCCTTTTTACAAGCCCATCTCACCCATCATACATGAAACAAGATTGAGCCATTGAGGTTCATCGTGTACGCACTGCACATTTAACCTTGTAAAACCTACAGCTCCCATGTGATTGAGTTATATGGATGCATGGTGAACTATCATGATAATTATTTCAATCAGGGTACAATTTCATCAAACAATCATGCAAAACTAAGTGCAAGAAATAACAAGTTTGATATGATAAAGTAATTTACCACATATGTAATAAAAACTAACTTCATTGTCAAATCCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGTGAAAACGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCGCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCG] [-] EMBL CB626926 [GTTATAGCAAATAGAAGCAGAGGTGCTTGTTTCGAAGGACACATGCCTCGAATAAGTCACAAGCAAACTATAACATATTCAAGTGACAACAATTACCATGCATTAAACAGGGAAAAGTAGCTTGCTCTTTCGTATTCGATACATATATCATTCACTCTCATATCACATTTCTACACTTAAATTCCTTTTTACAAGCCCATCTCACCCATCATACATGAAACAAGATTGAGCCATTGAGGTTCATCGTGTACGCACTGCACATTTAACCTTGTAAAACCTACAGCTCCCATGTGATTGAGTTATATGGATGCATGGTGAACTATCATGATAATTATTTCAATCAGGGTACAATTTCATCAAACAATCATGCAAAACTAAGTGCAAGAAATAACAAGTTTGATATGATAAAGTAATTTACCACATATGTAATAAAAACTAACTTCATTGTCAAATCCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGTGAAAACGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCGCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13276#0 TTTTTTTAAAACTGTGAAACCATTCATCGTATAAAACTCAAATGCTGT-GTCATTTTTCA 59 consensus_13276#1 ---AAATAAAACTGTGAAACCATTCATCGTATAAAAATCAAATGCTGTTGTCATTTTTCA 57 consensus_13276#2 ------------------------------------------------------------ consensus_13276#0 GATAGGTATTCCCTTGTTACAATGTACAAAAAAAGACGAACGATATG--TGTGCATT-GG 116 consensus_13276#1 GATAGGTATTCCCTTGTTACAATGTACAAAAAAAGACAAACGATATTGTTGTGCATTTGG 117 consensus_13276#2 ------------------------------------------------------------ consensus_13276#0 CTG-TTAAAAACCGAAACGCCTGCTTCACCGCTTAATTTGTATCATCTCCTGTACAGCTG 175 consensus_13276#1 CTGCTTAAAAACCGAAACGCCTGCTTCACCGCTTAATTTGTATCATCTCCTGTACAGCTG 177 consensus_13276#2 ------------------------------------------------------------ consensus_13276#0 GATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAACCATGGGCTA-------T 228 consensus_13276#1 GATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTAT 237 consensus_13276#2 ------------------------------------------------------------ consensus_13276#0 AGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGCGG-GGACTCCAA 287 consensus_13276#1 AGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAA 297 consensus_13276#2 ------------------------------------------------------------ consensus_13276#0 TCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTGGTTAACATTCGTTT-GCA 346 consensus_13276#1 TCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCA 357 consensus_13276#2 --------GTTATAGCAAATAGAAGCAGAGGTGCTTGTTTCGAAGGACACATGCCTCGAA 52 * * * * * * *** * * * * consensus_13276#0 AGAATATGGTAGTGTCTCTGCCAGATCCG-TGACCGAC-ATGGTTGCTACCAAGACGCTG 404 consensus_13276#1 AGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTG 417 consensus_13276#2 TAAGTCACAAGCAAACTATAACATATTCAAGTGACAACAATTACCATGCATTAAACAGGG 112 * * ** * ** ** * * ** ** * ** * consensus_13276#0 TAGAAAATGCCGATAACT-GTGAATAGTCCAAGCACGATT-ACTCCCATGATAAAGAGCA 462 consensus_13276#1 TAGAAAATGCCGATAACT-GTGAATAGTCCAAGCACGATT-ACTCCCATGATAAAGAGCA 475 consensus_13276#2 AAAAGTAGCTTGCTCTTTCGTATTCGATACATATATCATTCACTCTCATATCACATTTCT 172 * * * * * * ** * ** * *** **** *** * * * consensus_13276#0 ATGGTAACCCTGCTTCTC-CAGCACCACCCAAGCAACCAC-CACACTCTCCAGCTGTCGT 520 consensus_13276#1 ATGGTAACCCTGCTTCTC-CAGCACCACCCAAGCAACCAC-CACACTCTCCAGCTGTCGT 533 consensus_13276#2 ACACTTAAATTCCTTTTTACAAGCCCATCTCACCCATCATACATGAAACAAGATTGAGCC 232 * * * * *** * ** *** * * * * ** ** ** consensus_13276#0 TGCACAGCCCTCAAAGCATGTAGTGCA-ATCTGTCCACATGCAAAGCGTACCAGGTAGAT 579 consensus_13276#1 TGCACAGCCCTCAAAGCATGTAGTGCA-ATCTGTCCACATGCAAAGCGTACCAGGTAGAT 592 consensus_13276#2 ATTGAGGTTCATCGTGTACGCACTGCACATTTAACCTTGTAAAACCTACAGCTCCCATGT 292 * * * * * * **** ** * ** * ** * * * * consensus_13276#0 GGC-AATCTGCACACATCCTGAAACAGAAAAGAACAATGAGCAGTGCTGATGAAACAAGC 638 consensus_13276#1 GGC-AATCTGCACACATCC----------------------------------------- 610 consensus_13276#2 GATTGAGTTATATGGATGC----------------------------------------- 311 * * * * ** * consensus_13276#0 ATGCAGCATTAGTAGCTTGTTAATACAATTGCTAAATTAGTTGAAGCATACCCTGGTTGG 698 consensus_13276#1 ----------------------------------------------------CTGGTTGG 618 consensus_13276#2 -------------------------------------------------------ATGGT 316 * * consensus_13276#0 CAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCA 758 consensus_13276#1 CAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCA 678 consensus_13276#2 GAACTATCATGATAATTATTTCAATCAGG--GTACAATTTCATCAAACAATCATG---CA 371 * * * * ** * * ** * *** ** * * **** * ** * ** consensus_13276#0 TAACAAGTTATGAAGCATCCTGATAAACCCAGCAAAGCAAAAAATAGCAATGCCCCACAT 818 consensus_13276#1 TAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACAT 738 consensus_13276#2 AAACTAAGTGCAAGA------AATAA--CAAGTTTGATATGATAAAGTAATTTACCACAT 423 *** * * * **** * ** * * * ** *** ****** consensus_13276#0 ATGTAATAAAAACTAACTTCATTGTCAAATGCNCAGGCTGTCCTCAACCAGTAATTCTGT 878 consensus_13276#1 ATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGT 798 consensus_13276#2 ATGTAATAAAAACTAACTTCATTGTCAAATCCCCAGGCTGTCCTCAACCAGTAATTCTGT 483 ****************************** * *************************** consensus_13276#0 AATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACCTGAACAAATAAATAA 938 consensus_13276#1 AATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGAC---------------- 842 consensus_13276#2 AATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGAC---------------- 527 ******************************************** consensus_13276#0 CAAAAAACAAACTCTTTTATCATTCATTAGAATAAAGACAATCGAGAACTAACAAAGAGT 998 consensus_13276#1 ------------------------------------------------------------ consensus_13276#2 ------------------------------------------------------------ consensus_13276#0 ATCTAGAGGGACTTACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGA 1058 consensus_13276#1 ----------------AAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGA 886 consensus_13276#2 ----------------AAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGA 571 ******************************************** consensus_13276#0 AGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGT 1118 consensus_13276#1 AGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGT 946 consensus_13276#2 AGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGT 631 ************************************************************ consensus_13276#0 AAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGT 1178 consensus_13276#1 AAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGT 1006 consensus_13276#2 AAGGAGCTTTACAAGTGGTGCAATGTGAAAACGCAAATCCTTCCTTCACGGCTCTCCAGT 691 ************************* ***** **************************** consensus_13276#0 GGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGA 1238 consensus_13276#1 GGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGA 1066 consensus_13276#2 GGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGA 751 ************************************************************ consensus_13276#0 AATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCT 1298 consensus_13276#1 AATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCT 1126 consensus_13276#2 AATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCGCCGGCCT 811 **************************************************** ******* consensus_13276#0 CGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCG 1358 consensus_13276#1 CGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCG 1186 consensus_13276#2 CGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCG------------------------ 847 ************************************ consensus_13276#0 CCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTAC 1418 consensus_13276#1 CCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTAC 1246 consensus_13276#2 ------------------------------------------------------------ consensus_13276#0 AACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATC 1478 consensus_13276#1 AACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATC 1306 consensus_13276#2 ------------------------------------------------------------ consensus_13276#0 GAATCG------------------------------------------------------ 1484 consensus_13276#1 GAATCGAAGCCGACGACGACGAGTCGAGGGAGAGGTTGGCGGCTGTTAGGTGCGGTGGTG 1366 consensus_13276#2 ------------------------------------------------------------ consensus_13276#0 ------ consensus_13276#1 GACTAG 1372 consensus_13276#2 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||