These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2977 fasta sequence [AACTCTGAAGAAAACACACCATTTGCTTGGTGTCAATTATTGGAGGAGGATTTGAAAAATGCAACTATTGATCCTAGTGAAATCTCCGAGACATTTGATAGCTGTCCATATTATCTAAGTGAGAACACCAAATCTGCTCTCCAGTCATCAGCATATGTAAATTTGCACTGCAAGGACTATATCAAGTTCACAAAAGATATTTCTTCTCTTAGTCAGCGAGTACTGCTGTCTGGTCCGGCAGGAACCGATATCTACCAACAATATCTGGTTAAGGCACTTGCAAAACACTTTGGTGCTAGGTTGCTCACCATAGACTCTTCCATGCTATTTGGTGGGAAGACTACCAAGGAATCAGATTCATACAAAAAGGGTGATAGAGTGCGGTACATTGGTTCGTTACAGTCAACAGGTATTATCCTTGATGGAGAAAGTCCTCCAGATTTTGGTTCACAAGGTGAAATATGTCTTCCTTTCGAAGAGAATAGATCATCAAAGGTTGGAGTAAGATTTGATGAACAAATTCCGGGAGGTATTGATCTAGGAGGCAATTGTGAAGTTGATCATGGTTTATTTTGTTCAGTTGATTCTTTATGCCTCGATGCTCCAGGATGGGAAATTAGATCGAAACACCCATTTGATGTCATTATTCAGTTTATCTCTGAAGAAATCGAGCATGGTCCTCTAGTCTTATTTTTGAAGGACACAGAGAGAATTTGTGGGAATAATGATTCCTATCGTGCTCTCAAGAGCAAGCTTCAATATTTCCCAGCAGGTGCTTTTATTATTGGTTCTCATGTACATCCTGATGATCACAAAGAGAAGGCAAATGCCAGTTCTCTACTTCTTTCAAAGTTCCCATACAGCCAAGCAATACTTGACTTTGCATTTCAGGACTTTGATCGTGGAACTGATAAGAATAAAGAAACTTCAAAGGCGACGAAGCATCTAACTAAGCTTTTCCCAAATAAAGTGACGATCCAGCCACCAAAAGATGAAATTGAGCGCTCGAAGTGGAACCAGATGCTAGATCGAGATGTTGAAATTCTTAAAGGAAATGCTAACATTTCAAAAATTCGCTCTTTTCTATTAAAGATGGGCTTGGAAAGCAGTGATCTTGAAACAGTATGTGTTAAGGATCGTCTCCTAACAAACGAATGTATTGGTAAAATAGTTGGTTTTGCTTTGAGTCATCAACTTAAGCACTCTACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAGTCTTAAGCATGGTGTTGACATGTTGGAAAGTGTGGAATCTAACCCTAAGAGCAGCAACATAAGGAAGTCGCTCAAGGATATTGCTACTGAGAATGAATTTGAAAAGCGACTTCTTGCTGATGTTATACCCCCGGACGAAATAGGTGTCACCTTTGAGGACATTGGGGCATTGGAAAGTGTCAAGGAAACTCTTAAGGAGTTAGTGATGCTACCTTTGCAAAGGCCTGAATTGTTTTCCAGAGGTCAACTTATGAAGCCATGTAAAGGAATATTACTTTTTGGCCCGCCTGGTACAGGAAAGACAATGCTTGCCAAAGCTGTGGCTACAGAGGCTGGTGCGAATTTCATAAATATATCAATGTCGAGCATCTCTTCAAAGTGGTTTGGTGAAGGAGAGAAGTTTGTGAAAGCTGTATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAAAAGATAAAGAGCGTGTATTAGTACTTGCTGCAACTAATAGGCCATTTGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCTAGGCGGTTGATGGTGAATTTGCCGGATGCATCAAATAGAAGAAAAATTCTTAGCGTGATACTAGCTAAAGAAGATTTGGCAGATGATGTCGATCTTGAAGCTGTAGCTAGCTTGACTGAAGGGTATTCTGGCAGTGATCTCAAGAATCTATGTATTACTGCTGCTCATCTCCCTATTAAAGATATCCTTGAAAAGGAGAAGAAGGAGAAAGCTTTAGCAGAGGCAGAAAATAGGCCGCTGCCCCAATCATTTTCAAGTAACGATGTCCGTGCCTTACGACTAAGTGATTTCAAACATGCTCATGAACAGGTCTGTGCAAGTGTGTCTTCGGATTCAACTAACATGAATGAACTTATTCAATGGAATGATCTTTATGGAGAAGGTGGATCAAGGAAAAAGACTACTCTAAGCTACTTCAT-GTAGCTGAAGTTCATTCCAATGTACATATATATCAGAAGCATTAGGACAAACAATGGTGATTGGAGGCAAAAGTTTTGCAGATTCACTACAGTAAAAAAAGAACTGTACTATCTGCTAGACATCAGAAGAATTAACAACAGTTCATATCGAGGCGGATGGGATAAGACATTCAATCGTCGCCATGGTGTGGGCTGT-CGATTTTGGCGAAAGAGGAAGATGGGATT-CGGGATGTGGCTTACAAATTGCCTGCTGTGGTGGACCTGGGGGTAGTGACGGCAACATA-TCACCA-TCCGCAAAAATAGATTACATTTCTAGTCCCCATAGT-CAGGTCAGGCAGCCAGTTCCGAGAATGACATCTCTTACCGGGCCGGTTGGTTCACCGTCATTTTTCTCATTTCGTGACAGCGATTCAAATTTTTTTAGGTTAAAGTTGTGCCTGTGCAATTGTACAGTATGAGCATCCAGGCCAATTAACTTGTTATTGCGGTCACCGCAAAATTCATTTTAAACATGTCCGTTGTTACTCCATTTGTCGACTGTCTACCAGGTTTTGGTACTGCCCCTTTACTGATCATAATATTATATATGGAGATGCGGGTTACCATTATCGATTCAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAANAAAAAANAA] [+] EMBL AK066938 [AACTCTGAAGAAAACACACCATTTGCTTGGTGTCAATTATTGGAGGAGGATTTGAAAAATGCAACTATTGATCCTAGTGAAATCTCCGAGACATTTGATAGCTGTCCATATTATCTAAGTGAGAACACCAAATCTGCTCTCCAGTCATCAGCATATGTAAATTTGCACTGCAAGGACTATATCAAGTTCACAAAAGATATTTCTTCTCTTAGTCAGCGAGTACTGCTGTCTGGTCCGGCAGGAACCGATATCTACCAACAATATCTGGTTAAGGCACTTGCAAAACACTTTGGTGCTAGGTTGCTCACCATAGACTCTTCCATGCTATTTGGTGGGAAGACTACCAAGGAATCAGATTCATACAAAAAGGGTGATAGAGTGCGGTACATTGGTTCGTTACAGTCAACAGGTATTATCCTTGATGGAGAAAGTCCTCCAGATTTTGGTTCACAAGGTGAAATATGTCTTCCTTTCGAAGAGAATAGATCATCAAAGGTTGGAGTAAGATTTGATGAACAAATTCCGGGAGGTATTGATCTAGGAGGCAATTGTGAAGTTGATCATGGTTTATTTTGTTCAGTTGATTCTTTATGCCTCGATGCTCCAGGATGGGAAATTAGATCGAAACACCCATTTGATGTCATTATTCAGTTTATCTCTGAAGAAATCGAGCATGGTCCTCTAGTCTTATTTTTGAAGGACACAGAGAGAATTTGTGGGAATAATGATTCCTATCGTGCTCTCAAGAGCAAGCTTCAATATTTCCCAGCAGGTGCTTTTATTATTGGTTCTCATGTACATCCTGATGATCACAAAGAGAAGGCAAATGCCAGTTCTCTACTTCTTTCAAAGTTCCCATACAGCCAAGCAATACTTGACTTTGCATTTCAGGACTTTGATCGTGGAACTGATAAGAATAAAGAAACTTCAAAGGCGACGAAGCATCTAACTAAGCTTTTCCCAAATAAAGTGACGATCCAGCCACCAAAAGATGAAATTGAGCGCTCGAAGTGGAACCAGATGCTAGATCGAGATGTTGAAATTCTTAAAGGAAATGCTAACATTTCAAAAATTCGCTCTTTTCTATTAAAGATGGGCTTGGAAAGCAGTGATCTTGAAACAGTATGTGTTAAGGATCGTCTCCTAACAAACGAATGTATTGGTAAAATAGTTGGTTTTGCTTTGAGTCATCAACTTAAGCACTCTACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAGTCTTAAGCATGGTGTTGACATGTTGGAAAGTGTGGAATCTAACCCTAAGAGCAGCAACATAAGGAAGTCGCTCAAGGATATTGCTACTGAGAATGAATTTGAAAAGCGACTTCTTGCTGATGTTATACCCCCGGACGAAATAGGTGTCACCTTTGAGGACATTGGGGCATTGGAAAGTGTCAAGGAAACTCTTAAGGAGTTAGTGATGCTACCTTTGCAAAGGCCTGAATTGTTTTCCAGAGGTCAACTTATGAAGCCATGTAAAGGAATATTACTTTTTGGCCCGCCTGGTACAGGAAAGACAATGCTTGCCAAAGCTGTGGCTACAGAGGCTGGTGCGAATTTCATAAATATATCAATGTCGAGCATCTCTTCAAAGTGGTTTGGTGAAGGAGAGAAGTTTGTGAAAGCTGTATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAAAAGATAAAGAGCGTGTATTAGTACTTGCTGCAACTAATAGGCCATTTGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCTAGGCGGTTGATGGTGAATTTGCCGGATGCATCAAATAGAAGAAAAATTCTTAGCGTGATACTAGCTAAAGAAGATTTGGCAGATGATGTCGATCTTGAAGCTGTAGCTAGCTTGACTGAAGGGTATTCTGGCAGTGATCTCAAGAATCTATGTATTACTGCTGCTCATCTCCCTATTAAAGATATCCTTGAAAAGGAGAAGAAGGAGAAAGCTTTAGCAGAGGCAGAAAATAGGCCGCTGCCCCAATCATTTTCAAGTAACGATGTCCGTGCCTTACGACTAAGTGATTTCAAACATGCTCATGAACAGGTCTGTGCAAGTGTGTCTTCGGATTCAACTAACATGAATGAACTTATTCAATGGAATGATCTTTATGGAGAAGGTGGATCAAGGAAAAAGACTACTCTAAGCTACTTCAT GTAGCTGAAGTTCATTCCAATGTACATATATATCAGAAGCATTAGGACAAACAATGGTGATTGGAGGCAAAAGTTTTGCAGATTCACTACAGTAAAAAAAGAACTGTACTATCTGCTAGACATCAGAAGAATTAACAACAGTTCATATCGAGGCGGATGGGATAAGACATTCAATCGTCGCCATGGTGTGGGCTGT CGATTTTGGCGAAAGAGGAAGATGGGATT CGGGATGTGGCTTACAAATTGCCTGCTGTGGTGGACCTGGGGGTAGTGACGGCAACATA TCACCA TCCGCAAAAATAGATTACATTTCTAGTCCCCATAGT CAGGTCAGGCAGCCAGTTCCGAGAATGACATCTCTTACCGGGCCGGTTGGTTCACCGTCATTTTTCTCATTTCGTGACAGCGATTCAAATTTTTTTAGGTTAAAGTTGTGCCTGTGCAATTGTACAGTATGAGCATCCAGGCCAATTAACTTGTTATTGCGGTCACCGCAAAATTCATTTTAAACATGTCCGTTGTTACTCCATTTGTCGACTGTCTACCAGGTTTTGGTACTGCCCCT ] [+] EMBL CF304092 [ AAAAGGGTGATAGAGTGCGGTACATTGGTTCGTTACAGTCAACAGGTATTATCCTTGATGGAGAAAGTCCTCCAGATTTTGGTTCACAAGGTGAAATATGTCTTCCTTTCGAAGAGAATAGATCATCAAAGGTTGGAGTAAGATTTGATGAACAAATTCCGGGAGGTATTGATCTAGGAGGCAATTGTGAAGTTGATCATGGTTTATTTTGTTCAGTTGATTCTTTATGCCTCGATGCTCCAGGATGGGAAATTAGATCGAAACACCCATTTGATGTCATTATTCAGTTTATCTCTGAAGAAATCGAGCATGGTCCTCTAGTCTTATTTTTGAAGGACACAGAAAGAATTTGTGGGAATAATGATTCCTATCGTGCTCTCAAGAGCAAGCTTCAATATTTCCCAGCAGGTGCTTTTATTATTGGTTCTCATGTACATCCTGATGATCACAAAGAGAAGGCAAATGCCAGTTCTCTACTTCTTTCAAAGTTCCCATACAGCCAAGCAATACTTGACTTTGCATTTCAGGACTTTGATCGTGGAACTGATAAGAATAAAGAAACTTCAAAGGCGACGAAGCATCTAACTAAGCTTTTCCCAAATAAAGTGACGATCCAGCCACCAAAAGATGAAATTGAGCGCTCGAAGTGGAACCAGATGCTAGATCGAGATG ] [+] EMBL CB640836 [ TGTGTTAAGGATCGTCTCCTAACAAACGAATGTATTGATAAAATAGTTGGTTTTGCTTTGAGTCATCAACTTAAGCACTCTACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAGTCTTAAGCATGGTGTTGACATGTTGGAAAGTGTGGAATCTAACCCTAAGAGCAGCAACATAAGGAAGTCGCTCAAGGATATTGCTACTGAGAATGAATTTGAAAAGCGACTTCTTGCTGATGTTATACCCCCGGACGAAATAGGTGTCACCTTTGAGGACATTGGGGCATTGGAAAGTGTCAAGGAAACTCTTAAGGAGTTAGTGATGCTACCTTTGCAAAGGCCTGAATTGTTTTCCAGAGGTCAACTTATGAAGCCATGTAAAGGAATATTACTTTTTGGCCCGCCTGGTACAGGAAAGACAATGCTTGCCAAAGCTGTGGCTACAGAGGCTGGTGCGAATTTCATAAATATATCAATGTCGAGCATCTCTTCAAA ] [+] EMBL CA766915 [ AGTTTATGGTGAACTGGGATGGTCTAAGAACAAAAGATAAAGAGCGTGTATTAGTACTTGCTGCAACTAATAGGCCATTTGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCTAGGCGGTTGATGGTGAATTTGCCGGATGCATCAAATAGAAGAAAAATTCTTAGCGTGATACTAGCTAAAGAAGATTTGGCAGATGATGTCGATCTTGAAGCTGTAGCTAGCTTGACTGAAGGGTATTCTGGCAGTGATCTCAAGAATCTATGTATTACTGCTGCTCATCTCCCTATTAAAGATATCCTTGAAAAGGAGAAGAAGGAGAAAGCTTTAGCAGAGGCAGAAAATAGGCCGCTGCCCCAATCATTTTCAAGTAACGATGTCCGTGCCTTACGACTAAGTGATTTCAAACATGCTCATGAACAGGTCTGTGCAAGTGTGTCTTCGGATTCAACTAACATGAATGAACTTATTCAATGGAATGATCTTTATGGAGAAGGTGGATCAAGGAAAAAGACTACTCTAAGCTACTTCAT GTAGCTGAAGTTCATTCCAATGTACATATATATCAGAAGCATTAGGACAAACAATGGTGATTGGAGGCAAAAGTTTTGCAGATTCACTACAGTAAAAAAAGAACTGTACTATCTGCTAGACATCAGAAGAATTAACAACAGNTCATATCGAGGCGGATGGGATAAGACATNCAATCGTCGCCATGGTGTGGGCTGTCCGATTTTGGCGAAAGAGGAANATGGGATTCCGGNATGNGGCTTACNAAATGNCTGCTGGGGNGGACCTGGGGGTAGTGACGGCAACATATTCACCATTCCGC AAAANAGATTACATTTNTAGTCCCCATANTCCAGGTCAGGC ] [+] EMBL CF308878 [ GGATGCATCAAATAGAAGAAAAATTCTTAGCGTGATACTAGCTAAAGAAGATTTGGCAGATGATGTCGATCTTGAAGCTGTAGCTAGCTTGACTGAAGGGTATTCTGGCAGTGATCTCAAGAATCTATGTATTACTGCTGCTCATCTCCCTATTAAAGATATCCTTGAAAAGGAGAAGAAGGAGAAAGCTTTAGCAGAGGCAGAAAATAGGCCGCTGCCCCAATCATTTTCAAGTAACGATGTCCGTGCCTTACGACTAAGTGATTTCAAACATGCTCATGAACAGGTCTGTGCAAGTGTGTCTTCGGATTCAACTAACATGAATGAACTTATTCAATGGAATGATCTTTATGGAGAAGGTGGATCAAGGAAAAAGACTACTCTAAGCTACTTCATGGTAGCTGAAGTTCATTCCAATGTACATATATATCAGAAGCAT ] [-] EMBL CF308879 [ CTTATTCAATGGAATGATCTTTATGGAGAAGGTGGATCAAGGAAAAAGACTACTCTAAGCTACTTCAT GTAGCTGAAGTTCATTCCAATGTACATATATATCAGAAGCATTAGGACAAACAATGGTGATTGGAGGCAAAAGTTTTGCAGATTCACTACAGTAAAAAAAGAACTGTACTATCTGCTAGACATCAGAAGAATTAACAACAGTTCATATCGAGGCGGATGGGATAAGACATTCAATCGTCGCCATGGTGTGGGCTGT CGATTTTGGCGAAAGAGGAAGATGGGATT CGGGATGTGGCTTACAAATTGCCTGCTGTGGTGGACCTGGGGGTAGTGACGGCAACATA TCACCA TCCGCAAAAATAGATTACATTTCTAGTCCCCATAGT CAGGTCAGGCAGCCAGTTCCGAGAATGACATCTCTTACCGGGCCGGTTGGTTCACCGTCATTTTTCTCATTTCGTGACAGCGATTCAAATTTTTTTAGGTTAAAGTTGTGCCTGTGCAATTGTACAGTATAAGCATCCAGGCCAATTAACTTGTTATTGCGGTCACCGCAAAATTCATTTTAAACATGTCCGTTGTTACTCCAaaaaa ] [-] EMBL CA762815 [ ggGGAATGATCCTTTTGGAGAAGGTGGATCAAGGAAAAAGACTACTCTAAGCTACTTCAA GTAGCTGAAGTTCATTCCAATGTACATATATATCAGAAGCACTAGGACAAACAATGGTGATTGGAGGCAAAAGTTTTGCAGATTCCCTACAGTAAAAAAAGAACTGTACTATTTGCTAGACATCAGAAGAATTAACAACAGTTCAAATCGAGGCGGATGGGATAAGACATTCAATTGTTGCCATGGTGTGGGCTGT CGATTTTGGCGAAAGAGGAAGATGGGATT CGGGATGTGGCTTACAAATTGCCTGCTGTGGTGGACCTGGGGGTAGTGACGGCAACATA TCACCA TCCGCAAAAATAGATTACATTTCTAGTCCCCATAGT CAGGTCAGGCAGCCAGTTCCGAGAATGACATCTCTTACCGGGCCGGTTGGTTCACCGTCATTTTTCTCATTTCGTGACAGCGATTCAAATTTTTTTAGGTTAAAGTTGTGCCTGTGCAATTGTACAGTATGAGCATCCAGGCCAATTAACTTGTTATTGCGGTCACCGCAAAATTCATTTTAAACATGTCCGTTGTTACTCCATTTGTCGACTGTCTACCAGGTTTTGGTACTGCCCCTTTACTGATCATAATATTATATAAGGAGATGCGGGTTACCATTATCGATTCAAAAAAAAAA ] [+] EMBL BI810969 [ AGACATTCAATCGTC CCATGGTTTGGCCTTT CGATTTTGCCGAAAGAGGAAGATGGGATT CGGGATGTGGCTTACAAATTGCCTGCTGT GTGGACCTGGGGTTAGTGAC GCAACATA TCACCA TCCGC AAAATAGATTACATTTCTAGTCCCCATAGT CAGGTCA GCAGCCAGTTCCGAGAATGACATCTCTTACCGGGCCGGTTGGTTCACCGTCATTTTTCTCATTTCGTGACAGCGATTCAAATTTTTTTAGGTTAAAGTTGTGCCTGT C ATTGTACAGTATGAGCATCCAGGCCAATTAACTTGTTATTGCGGTCACCGCAAAATTCATTTTAAACATGTCC TTGTTACTCCATTTGTCGACTGTCTACCA GTTTTGGTACTGCCCCTTTACTGATCATAATATTATATATGGAGATCCGGGTTACCATTATCGATTCAAAAA ] [+] EMBL AU162196 [ AAATTTTTTTAGGTTAAAGTTGTGCCTGTGCAATTGTACAGTATGAGCATCCAGGCCAATTAACTTGTTATTGCGGTCACCGCAAAATTCATTTTAAACATGTCCGTTGTTACTCCATTTGTCGACTGTCTACCAGGTTTTGGTACTGCCCCTTTACTGATCATAATATTATATATGGAGATGCGGGTTACCATTATCGATTCAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAANAAAAAANAA] consensusID : consensus_13278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 493 fasta sequence [TGGACTGAAGGAGTAGAAAAGTTTTGCAGATTCACTACAGTAAAAAAAGAACTGTACTATCTGCTAGACATCAGAAGAATTAACAACAGTTCATATCGAGGCGGATGGGATAAGACATTCAATCGTCGCCATGGTGTGGGCTGTCGATTTTGGCGAAAGAGGAAGATGGGATTCGGGATGTGGCTTACAAATTGCCTGCTGTGGTGGACCTGGGGGTAGTGACGGCAACATATCACCATCCGCAAAAATAGATTACATTTCTAGTCCCCATAGTCAGGTCAGGCAGCCAGTTCCGAGAATGACATCTCTTACCGGGCCCGGTTGGTTCACCGTCATTTTTCTCATTTCGTGACAGCGATTCAAATTTTTTTAGGTTAAAGTTGTGCCTGTGCAATTGTACAGTATGAGCATCCAGGCCAATTAACTTGTTATTGCGGTCCCCGCAAAATTCATTTTAAACATGTCCGTTGTTACTCCAAAAAAAAAAAAAAAA] [+] EMBL CF331877 [TGGACTGAAGGAGTAGAAAAGTTTTGCAGATTCACTACAGTAAAAAAAGAACTGTACTATCTGCTAGACATCAGAAGAATTAACAACAGTTCATATCGAGGCGGATGGGATAAGACATTCAATCGTCGCCATGGTGTGGGCTGTCGATTTTGGCGAAAGAGGAAGATGGGATTCGGGATGTGGCTTACAAATTGCCTGCTGTGGTGGACCTGGGGGTAGTGACGGCAACATATCACCATCCGCAAAAATAGATTACATTTCTAGTCCCCATAGTCAGGTCAGGCAGCCAGTTCCGAGAATGACATCTCTTACCGGGCCCGGTTGGTTCACCGTCATTTTTCTCATTTCGTG ] [-] EMBL CF331878 [ AAGTTTTGCAGATTCACTACAGTAAAAAAAGAACTGTACTATCTGCTAGACATCAGAAGAATTAACAACAGTTCATATCGAGGCGGATGGGATAAGACATTCAATCGTCGCCATGGTGTGGGCTGTCGATTTTGGCGAAAGAGGAAGATGGGATTCGGGATGTGGCTTACAAATTGCCTGCTGTGGTGGACCTGGGGGTAGTGACGGCAACATATCCCCATCCGCAAAAATAGATTACATTTTTAGTCCCCATAGTCAGGTCAGGCAGCCAGTTCCGAGAATGACATTTCTTACCGGG CCGGTTGGTTCCCCGTCATTTTTCTCATTTCGTGACAGCGATTCAAATTTTTTTAGGTTAAAGTTGTGCCTGTGCAATTGTACAGTATGAGCATCCAGGCCAATTAACTTGTTATTGCGGTCCCCGCAAAATTCATTTTAAACATGTCCGTTGTTACTCCAAAAAAAAAAAAAAAA] consensusID : consensus_13278#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 88 fasta sequence [CAATAACAAGTTAATTGGCCTGGATGCTCATACTGTACAATTGCACAGGCACAACTTTATATATGGAGATGCGGGTTACCATTAAAAA] [+] EMBL BM038787 [CAATAACAAGTTAATTGGCCTGGATGCTCATACTGTACAATTGCACAGGCACAACTTTATATATGGAGATGCGGGTTACCATTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13278#0 AACTCTGAAGAAAACACACCATTTGCTTGGTGTCAATTATTGGAGGAGGATTTGAAAAAT 60 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GCAACTATTGATCCTAGTGAAATCTCCGAGACATTTGATAGCTGTCCATATTATCTAAGT 120 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GAGAACACCAAATCTGCTCTCCAGTCATCAGCATATGTAAATTTGCACTGCAAGGACTAT 180 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 ATCAAGTTCACAAAAGATATTTCTTCTCTTAGTCAGCGAGTACTGCTGTCTGGTCCGGCA 240 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GGAACCGATATCTACCAACAATATCTGGTTAAGGCACTTGCAAAACACTTTGGTGCTAGG 300 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TTGCTCACCATAGACTCTTCCATGCTATTTGGTGGGAAGACTACCAAGGAATCAGATTCA 360 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TACAAAAAGGGTGATAGAGTGCGGTACATTGGTTCGTTACAGTCAACAGGTATTATCCTT 420 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GATGGAGAAAGTCCTCCAGATTTTGGTTCACAAGGTGAAATATGTCTTCCTTTCGAAGAG 480 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 AATAGATCATCAAAGGTTGGAGTAAGATTTGATGAACAAATTCCGGGAGGTATTGATCTA 540 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GGAGGCAATTGTGAAGTTGATCATGGTTTATTTTGTTCAGTTGATTCTTTATGCCTCGAT 600 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GCTCCAGGATGGGAAATTAGATCGAAACACCCATTTGATGTCATTATTCAGTTTATCTCT 660 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GAAGAAATCGAGCATGGTCCTCTAGTCTTATTTTTGAAGGACACAGAGAGAATTTGTGGG 720 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 AATAATGATTCCTATCGTGCTCTCAAGAGCAAGCTTCAATATTTCCCAGCAGGTGCTTTT 780 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 ATTATTGGTTCTCATGTACATCCTGATGATCACAAAGAGAAGGCAAATGCCAGTTCTCTA 840 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 CTTCTTTCAAAGTTCCCATACAGCCAAGCAATACTTGACTTTGCATTTCAGGACTTTGAT 900 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 CGTGGAACTGATAAGAATAAAGAAACTTCAAAGGCGACGAAGCATCTAACTAAGCTTTTC 960 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 CCAAATAAAGTGACGATCCAGCCACCAAAAGATGAAATTGAGCGCTCGAAGTGGAACCAG 1020 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 ATGCTAGATCGAGATGTTGAAATTCTTAAAGGAAATGCTAACATTTCAAAAATTCGCTCT 1080 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TTTCTATTAAAGATGGGCTTGGAAAGCAGTGATCTTGAAACAGTATGTGTTAAGGATCGT 1140 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 CTCCTAACAAACGAATGTATTGGTAAAATAGTTGGTTTTGCTTTGAGTCATCAACTTAAG 1200 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 CACTCTACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAGTCTT 1260 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 AAGCATGGTGTTGACATGTTGGAAAGTGTGGAATCTAACCCTAAGAGCAGCAACATAAGG 1320 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 AAGTCGCTCAAGGATATTGCTACTGAGAATGAATTTGAAAAGCGACTTCTTGCTGATGTT 1380 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 ATACCCCCGGACGAAATAGGTGTCACCTTTGAGGACATTGGGGCATTGGAAAGTGTCAAG 1440 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GAAACTCTTAAGGAGTTAGTGATGCTACCTTTGCAAAGGCCTGAATTGTTTTCCAGAGGT 1500 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 CAACTTATGAAGCCATGTAAAGGAATATTACTTTTTGGCCCGCCTGGTACAGGAAAGACA 1560 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 ATGCTTGCCAAAGCTGTGGCTACAGAGGCTGGTGCGAATTTCATAAATATATCAATGTCG 1620 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 AGCATCTCTTCAAAGTGGTTTGGTGAAGGAGAGAAGTTTGTGAAAGCTGTATTTTCACTG 1680 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGGTTGATGGCATGTTGGGTAGG 1740 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 CGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAAC 1800 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TGGGATGGTCTAAGAACAAAAGATAAAGAGCGTGTATTAGTACTTGCTGCAACTAATAGG 1860 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 CCATTTGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCTAGGCGGTTGATGGTGAATTTG 1920 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 CCGGATGCATCAAATAGAAGAAAAATTCTTAGCGTGATACTAGCTAAAGAAGATTTGGCA 1980 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GATGATGTCGATCTTGAAGCTGTAGCTAGCTTGACTGAAGGGTATTCTGGCAGTGATCTC 2040 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 AAGAATCTATGTATTACTGCTGCTCATCTCCCTATTAAAGATATCCTTGAAAAGGAGAAG 2100 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 AAGGAGAAAGCTTTAGCAGAGGCAGAAAATAGGCCGCTGCCCCAATCATTTTCAAGTAAC 2160 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GATGTCCGTGCCTTACGACTAAGTGATTTCAAACATGCTCATGAACAGGTCTGTGCAAGT 2220 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GTGTCTTCGGATTCAACTAACATGAATGAACTTATTCAATGGAATGATCTTTATGGAGAA 2280 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 GGTGGATCAAGGAAAAAGACTACTCTAAGCTACTTCATGTAGCTGAAGTTCATTCCAATG 2340 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TACATATATATCAGAAGCATTAGGACAAACAATGGTGATTGGAGGCAAAAGTTTTGCAGA 2400 consensus_13278#1 ------------------------------TGGACTGAAGGAGTAGAAAAGTTTTGCAGA 30 consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TTCACTACAGTAAAAAAAGAACTGTACTATCTGCTAGACATCAGAAGAATTAACAACAGT 2460 consensus_13278#1 TTCACTACAGTAAAAAAAGAACTGTACTATCTGCTAGACATCAGAAGAATTAACAACAGT 90 consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TCATATCGAGGCGGATGGGATAAGACATTCAATCGTCGCCATGGTGTGGGCTGTCGATTT 2520 consensus_13278#1 TCATATCGAGGCGGATGGGATAAGACATTCAATCGTCGCCATGGTGTGGGCTGTCGATTT 150 consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TGGCGAAAGAGGAAGATGGGATTCGGGATGTGGCTTACAAATTGCCTGCTGTGGTGGACC 2580 consensus_13278#1 TGGCGAAAGAGGAAGATGGGATTCGGGATGTGGCTTACAAATTGCCTGCTGTGGTGGACC 210 consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TGGGGGTAGTGACGGCAACATATCACCATCCGCAAAAATAGATTACATTTCTAGTCCCCA 2640 consensus_13278#1 TGGGGGTAGTGACGGCAACATATCACCATCCGCAAAAATAGATTACATTTCTAGTCCCCA 270 consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TAGTCAGGTCAGGCAGCCAGTTCCGAGAATGACATCTCTTACCGGGCC-GGTTGGTTCAC 2699 consensus_13278#1 TAGTCAGGTCAGGCAGCCAGTTCCGAGAATGACATCTCTTACCGGGCCCGGTTGGTTCAC 330 consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 CGTCATTTTTCTCATTTCGTGACAGC-GATTCAAATTTTTTTAGGTTAAAGTTGTGCCTG 2758 consensus_13278#1 CGTCATTTTTCTCATTTCGTGACAGC-GATTCAAATTTTTTTAGGTTAAAGTTGTGCCTG 389 consensus_13278#2 -----------CAATAACAAGTTAATTGGCCTGGATGCTCATACTGTACAATTGCACAGG 49 ** * * * * ** * ** ** * *** * * consensus_13278#0 TGCAATTGTACAGTATGAGCATCCAGGCCA--ATTAACTTGTTATTGCGGTCACCGCAAA 2816 consensus_13278#1 TGCAATTGTACAGTATGAGCATCCAGGCCA--ATTAACTTGTTATTGCGGTCCCCGCAAA 447 consensus_13278#2 CACAACTTTATA-TATGGAGATGCGGGTTACCATTAAAAA-------------------- 88 *** * ** * **** ** * ** * ***** consensus_13278#0 ATTCATTTTAAACATGTCCGTTGTTACTCCATTTGTCGACTGTCTACCAGGTTTTGGTAC 2876 consensus_13278#1 ATTCATTTTAAACATGTCCGTTGTTACTCCAAAAAAAAAAAAAAAA-------------- 493 consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 TGCCCCTTTACTGATCATAATATTATATATGGAGATGCGGGTTACCATTATCGATTCAAA 2936 consensus_13278#1 ------------------------------------------------------------ consensus_13278#2 ------------------------------------------------------------ consensus_13278#0 AAAAAAAAANAAAAAAAAAAAAAAAAAAAAANAAAAAANAA 2977 consensus_13278#1 ----------------------------------------- consensus_13278#2 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||