These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1237 fasta sequence [CCGAGTTGCACGGCACCACCACCGCCTTCTTCCTTCACTCGACCCGACCGCCGTCTCGTCCGTCTCCCCCGCTTCCTCCGCCTCCAAAACCCCCCCATCCCAACCCGACCTCCTCACTCGCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCGAGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGTTCTCCATCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCCTCATCGACCACAAGTCCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGAGGTATAGAGCTGTCACGAGTGCATACTAC-AGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACCAAGCGCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGAACATAGTCATCATGCTGGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACA-CGTATTACTATTAA--TATCTACTTGCTGCTAAAAAACCGTACTAACGTGTGGCATTGCCTTACCGAAAAAAAAAAAAAAA] [+] EMBL AK111872 [CCGAGTTGCACGGCACCACCACCGCCTTCTTCCTTCACTCGACCCGACCGCCGTCTCGTCCGTCTCCCCCGCTTCCTCCGCCTCCAAAACCCCCCCATCCCAACCCGACCTCCTCACTCGCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCGAGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGTTCTCCATCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCCTCATCGACCACAAGTCCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGAGGTATAGAGCTGTCACGAGTGCATACTAC AGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACCAAGCGCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGAACATAGTCATCATGCTGGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACA CGTATTACTATTAA TATCTACTTGCTGC ] [+] EMBL AK104132 [ CCGCTTCCTCCGCCTCCAAAACCCCCCCATCCCAACCCGACCTCCTCACTCGCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCGAGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGTTCTCCATCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCCTCATCGACCACAAGTCCGTCAAGGCCTAGATCTGGGACACCGCCGGCCAGGAGAGGTATAGAGCTGTCACGAGTGCATACTAC AGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACCAAGCGCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGAACATAGTCATCATGCTGGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTAT ] [+] EMBL CA753557 [ CTCCAAAACCCCCCCATCCCAACCCGACCTCCTCACTCGCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCGAGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGTTCTCCATCGACTCCAAG ] [+] EMBL AU064542 [ CCCAACCCGACCTCCTCACTCGCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCGAGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGTTCTCCATCGACTCCAAGGCCANCATCGGCGTCGAGTTCCAGACCCGCACCCTCCTCATCGACCACAAGTCCGTCAAGGCCCAGATCTGGGACAACGCCGGCCAGGAGAGGTATAGAGCTGTCACGAGTGCATACTACAAGAGGAGCATTGGGAGCTCTNCTAGTCTACGATATCACC ] [+] EMBL AA749892 [ TCACT GCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCGCAGC AGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTC GCAAGT CAGATCCT G CCG TTCG CCGCAACGAGTTC ] [+] EMBL CK085128 [ GCACCCTCCTCATCGACCACAAGTCCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGAGGTATAGAGCTGTCACGAGTGCATACTAC AGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACCAAGCGCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGAACATAGTCATCATGCTGGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCA ] [+] EMBL C97534 [ GCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGNAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTNCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTNCCTCTTTTTNAGAATTTTCACGNGATCTTTCTNGACGTACATCCCT CTCAAA AGCTCnggg ] [+] EMBL AU166141 [ TTCAAAATTCCCAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTNCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACA CGTATTACTATTAA TATCTACTTGCTGCTAAAAAA ] [+] EMBL BI808881 [ AGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGACCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACACCGTATTACTATTAA aaaaaaaa ] [+] EMBL AU091578 [ GAATTTTCACGCGATCTTTCTGGACGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACA CGTATTACTATTAATTTTTTTTCTTGCTGCTATGACACCGTACTAACGTGTGGCATTGCCTTACCGAAAAAAAAAAAAAAA] consensusID : consensus_13293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [GATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACACGTATTACTATTAATATCTACTTGCTGCTATGACACCGTAAAAAAA] [+] EMBL AU063657 [GATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACACGTATTACTATTAATATCTACTTGCTGCTATGACACCGTAAAAAAA] consensusID : consensus_13293#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [GTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGNCNNAGATCNTCGCCCGNTTCGCCCGCAACGAGTTCTCCATCGACTNCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGNACNNNNGNCATCGACCACAAGTCCGTCANAGCCCAGATCTGGGACACCGNCGGCCAGGAGAGGTATAGAGCT] [+] EMBL AU068550 [GTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGNCNNAGATCNTCGCCCGNTTCGCCCGCAACGAGTTCTCCATCGACTNCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGNACNNNNGNCATCGACCACAAGTCCGTCANAGCCCAGATCTGGGACACCGNCGGCCAGGAGAGGTATAGAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13293#0 CCGAGTTGCACGGCACCACCACCGCCTTCTTCCTTCACTCGACCCGACCGCCGTCTCGTC 60 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 CGTCTCCCCCGCTTCCTCCGCCTCCAAAACCCCCCCATCCCAACCCGACCTCCTCACTCG 120 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 CCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCG 180 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 AGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGC 240 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 TGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGT 300 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 TCTCCATCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCCTCATCG 360 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 ACCACAAGTCCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGAGGTATAGAGCTG 420 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 TCACGAGTGCATACTACAGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACCAAGC 480 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 GCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGA 540 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 ACATAGTCATCATGCTGGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCA 600 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 CCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTC 660 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 TGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTC 720 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 ACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAG 780 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 GGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTT 840 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 CCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTG-TGCCTCTTTTTGAGAATTT 899 consensus_13293#1 ----------------------GATTCAGCTGTATTTGTG-TGCCTCTTTTTGAGAATTT 37 consensus_13293#2 -------------------------------GTGTTCAAGGTGGTGCTGATCGGGGACTC 29 ** ** * ** ** * * * * * consensus_13293#0 TCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGT- 958 consensus_13293#1 TCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGT- 96 consensus_13293#2 ---CGCCGTCGG-CAAGNCNNAGATCNTCGCCCGNTTCGCCC---GCAACGAGTTCTCCA 82 *** ** * * * *** ** * * ** * ** ***** * consensus_13293#0 TGGACTATT-GGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTT 1017 consensus_13293#1 TGGACTATT-GGTTGTTTCGGTGATCAGGTGGACGG------------------------ 131 consensus_13293#2 TCGACTNCAAGGCCACCATCGGCGTCGAGTTC-CAG------------------------ 117 * **** ** * ** ** * * consensus_13293#0 TGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTG 1077 consensus_13293#1 ------------------------------------------------------------ consensus_13293#2 ------------------------------------------------------------ consensus_13293#0 GGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTA 1137 consensus_13293#1 -------------------------AATAGCCATGTATGCCGATTGTTTTACATTTCTTA 166 consensus_13293#2 --------------------------ACCCGNACNNNNGNCATCGACCACAAGTCCGTCA 151 * * * * * * * * consensus_13293#0 AATCCTTTATGTATTGTTACACGTATTACTATTAATATCTACTTGCTGCTAAAAAACCGT 1197 consensus_13293#1 AATCCTTTATGTATTGTTACACGTATTACTATTAATATCTACTTGCTGCTATGACACCGT 226 consensus_13293#2 NAGCCCAGATCTGGGACACCGNCGGCCAGGAGAGGTATAGAGCT---------------- 195 * ** ** * * * * *** * * consensus_13293#0 ACTAACGTGTGGCATTGCCTTACCGAAAAAAAAAAAAAAA 1237 consensus_13293#1 AAAAAAA--------------------------------- 233 consensus_13293#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||