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Oryza sativa
cluster # 13294 cluster # 13294       Sequences # 12       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13294#0 length = 1306 sequences # 6  
consensus_13294#1 length = 554 sequences # 1  
consensus_13294#2 length = 491 sequences # 2  
consensus_13294#3 length = 353 sequences # 1  
consensus_13294#4 length = 333 sequences # 1  
consensus_13294#5 length = 325 sequences # 1  

consensusID : consensus_13294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1306
fasta sequence
                              [TCGGACGGCGATGACTTCGCCTTGTACGACCTCGTCAACTCCTACATGGACCTCGACGGGATGGAGGCTCTCAACTCCTCCGAGGAGCGGCACGAGGACCGCGACAGCCGCGCCAGCGGCACGCGCACCGGGAGCGTGGCCGACAGCAGCGAGAACGAGGCCGAGAGCCACTCGACTCCAGTGGAGAGGAAGGACGGAGGAGGCAAATCCCGGCATTGCCGCAGCTTATCGGTGGACAGCTTCATCGAGAAGCTCAACTTCGACGAGTCACCGAAGCTGCCACTGCCGTCTCCCAGCGGTGGCCTATCCAGAAGCGGGAGCGGGTCCTTGGATGGCGGCGCTGCATCTCTGTTTGGTGCTGAGTTTGCCAATGGGGAGTTCACTGAAGCTGAGAAGAAGAAGATCATGGCAAATGAGCGCCTTGCCGAGATCGCTTTGACTGATCCTAAGAGGGTTAAAAGAATTTTGGCAAATCGGCAGTCTGCGGCAAGGTCAAAGGAGCGTAAGATGAGGTACATTCAAGAGCTTGAGCACAAGGTTCAGGTGTTGCAGACAGAGGCTACCACACTCTCAGCACAG-TTGACAATGCTGCAGAGGGACTCCACTGGACTAGCCACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATGGAGCAACAAGCACAGCTAAGAGATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAG-CGTCTGAAACTTGCATCTGGCGAGATAACTGACGGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAACTCCCAGCTGATTCAATTGCAACAGCTGCA-AATACAGCAACAACAGTCATCGCAGACGACGCAGCAAGGTCAGCAACAACAGCCACAGAAATCCGCATAGATCAAGGTCCAAAAAGCTGGA---CCTCCTATCGCAAAGCAGTTGATTTGAAATCATGATGAGCATGATGAAATTGAAGGATGATGGTGATCCATGCTGGGAAAAGAAGAATCTTTTGCTTATATATATA------TATCTCAGACAGATTGTAGGATAGGTATGGTGGTATAGCAGCAGAAGATGGGTCTTCTTTGCGAGTTCTTTTGTTCAAGGTGGTAAATGCCTTAGCTGGAGTATCCTATCTCATCGCATCGCATCGTATTATACATGAGTACCGTCGCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCTTTTGTACTTTCGTCCAGAGGATAGCGTATTACAATGTACCACAGTACTTATGCTGGCTGTAATAGTGTAATTACCTATAGCGTTGCTTAAAAAAA]

[+] EMBL CB651594             [TCGGACGGCGATGACTTCGCCTTGTACGACCTCGTCAACTCCTACATGGACCTCGACGGGATGGAGGCTCTCAACTCCTCCGAGGAGCGGCACGAGGACCGCGACAGCCGCGCCAGCGGCACGCGCACCGGGAGCGTGGCCGACAGCAGCGAGAACGAGGCCGAGAGCCACTCGACTCCAGTGGAGAGGAAGGACGGAGGAGGCAAATCCCGGCATTGCCGCAGCTTATCGGTGGACAGCTTCATCGAGAAGCTCAACTTCGACGAGTCACCGAAGCTGCCACTGCCGTCTCCCAGCGGTGGCCTATCCAGAAGCGGGAGCGGGTCCTTGGATGGCGGCGCTGCATCTCTGTTTGGTGCTGAGTTTGCCAATGGGGAGTTCACTGAAGCTGAGAAGAAGAAGATCATGGCAAATGAGCGCCTTGCCGAGATCGCTTTGACTGATCCTAAGAGGGTTAAAAGAATTTTGGCAAATCGGCAGTCTGCGGCAAGGTCAAAGGAGCGTAAGATGAGGTACATTCAAGAGCTTGAGCACAAGGTTCAGGTGTTGCAGACAGAGGCTACCACACTCTCAGCACAG TTGACAATGCTGCAGAGGGACTCCACTGGACTAGCCACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCCATGGAGCAACAAGCACAGCTAAGAGATGCCCTGAATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AF467732             [                                                                                                                  AGCGGCACGCGCACCGGGAGCGTGGCCGACAGCAGCGAGAACGAGGCCGAGAGCCACTCGACTCCAGTGGAGAGGAAGGACGGAGGAGGCAAATCCCGGCATTGCCGCAGCTTATCGGTGGACAGCTTCATCGAGAAGCTCAACTTCGACGAGTCACCGAAGCTGCCACTGCCGTCTCCCAGCGGTGGCCTATCCAGAAGCGGGAGCGGGTCCTTGGATGGCGGCGCTGCATCTCTGTTTGGTGCTGAGTTTGCCAATGGGGAGTTCACTGAAGCTGAGAAGAAGAAGATCATGGCAAATGAGCGCCTTGCCGAGATCGCTTTGACTGATCCTAAGAGGGTTAAAAGAATTTTGGCAAATCGGCAGTCTGCGGCAAGGTCAAAGGAGCGTAAGATGAGGTACATTCAAAAGCTTGAGCACAAGGTTCAGGTGTTGCAAACAGAGGCTTCCACACTCTCA CACAGTTTGA AATGCTTGAGAAGGACTCC CTGGACTAGCC CTCAAAACAATGAGTT AAAATTAGGTTGC AGC ATGGA CCAC AGCCCAGTTTAAAAATGCCCTG ATGAAGCATT ACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA998073             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCGGCAAGGTCAAAGGAGCGTAAGATGAGGTACATTCAAGAGCTTGAGCACAAGGTTCAGGTGTTGCAGACAGAGGCTACCACACTCTCAGCACAG TTGACAATGCTGCAGAGGGACTCCACTGGACTAGCCACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATGGAGCAACAAGCACAGCTAAGAGATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAGCCGTCTGAAACTTGCATCTGGCGAGATAACTGACGGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAACTCCCAGCTGATTCAATTGCAACAGCTGCA AATACAGCAACAACAGTCATCGCAGACGACGCAGCAAGGTCAGCAACAACAGCCACAGAAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA998067             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCGGCAAGGTCAAAGGAGCGTAAGATGAGGTACATTCAATAGCTTGAGCACAAGGTTCAGGTGTTGCAGACAGAGGCTACCACACTCTCAGCACAG TTGACAATGCTGCAGAGGGACTCCACTGGACTAGCCACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATGGAGCAACAAGCACAGCTAAGAGATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAG CGTCTGAAACTTGCTTTTGGCGAGATAACTGACGGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAACTCCCAGCTGATTCAATTGCAACAGCTGCA AATACAGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BP184963             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   acgaggAGATGAGGTACATTCAAGAGCTTGAGCACAAGGTTCAGGTGTTGCAGACAGAGGCTACCACACTCTCAGCACAG TTGACAATGCTGCAGAGGGACTCCACTGGACTAGCCACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATGGAGCAACAAGCACAGCTAAGAGATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAG CGTCTGAAACTTGCAACTGGCGAGATAACTGACGGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAACTCCCAGCTGATTCAATTGCAACAGCTGCA AATACAGCAACAACAGTCATCGCAGACGACGCAGCAAGGTCAGCAACAACAGCCACAGAAATCCGCATAGATCAAGGTCCAAAAAGCTGGA   CCTCCTATCGCAAAGCAGTTGATTTGAAATCATGATGAGCATGATGAAATTGAAGGATGATGGTGATCCATGCTGGGAAAAGAAGAATCTTTTGCTTATATATATA      TATCTCAGACAGATTGTAGGATAGGTATGGTGGTATAGCAGCAGAAGATGG                                                                                                                                                                                                                                                         ]
[+] EMBL BI812352             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAATTGCAACAGCTGCACAATACA CAGCAACAGTCATCGCAGACGACGCAGCAAGGTCAGCAAC ACAGCCACAGAAATCCGCATAGATCAAGGTCCCAAAAGCTGGACCTCCTCCTATCGC AAGCAGTTGATTTGAAATCATGATGAGCATGATGAAATTGAAGGATGATGGTGATCCATGCTGGGAAAAGAAGAATCTTTTGCTTATATATATATCTATCTATCTCAGACAGATTGTAGGATAGGTATGGTGGTATAGCAGCAGAAGATGGGTCTTCTTTGCGAGTTCTTTTGTTCAAGGTGGTAAATGCCTTAGCTGGAGTATCCTATCTCATCGCATCGCATCGTATTATACATGAGTACCGTCGCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCTTTTGTACTTTCGTCCAGAGGATAGCGTATTACAATGTACCACAGTACTTATGCTGGCTGTAATAGTGTAATTACCTATAGCGTTGCTTAAAAAAA]


>consensus_13294#0 TCGGACGGCGATGACTTCGCCTTGTACGACCTCGTCAACTCCTACATGGACCTCGACGGG ATGGAGGCTCTCAACTCCTCCGAGGAGCGGCACGAGGACCGCGACAGCCGCGCCAGCGGC ACGCGCACCGGGAGCGTGGCCGACAGCAGCGAGAACGAGGCCGAGAGCCACTCGACTCCA GTGGAGAGGAAGGACGGAGGAGGCAAATCCCGGCATTGCCGCAGCTTATCGGTGGACAGC TTCATCGAGAAGCTCAACTTCGACGAGTCACCGAAGCTGCCACTGCCGTCTCCCAGCGGT GGCCTATCCAGAAGCGGGAGCGGGTCCTTGGATGGCGGCGCTGCATCTCTGTTTGGTGCT GAGTTTGCCAATGGGGAGTTCACTGAAGCTGAGAAGAAGAAGATCATGGCAAATGAGCGC CTTGCCGAGATCGCTTTGACTGATCCTAAGAGGGTTAAAAGAATTTTGGCAAATCGGCAG TCTGCGGCAAGGTCAAAGGAGCGTAAGATGAGGTACATTCAAGAGCTTGAGCACAAGGTT CAGGTGTTGCAGACAGAGGCTACCACACTCTCAGCACAGTTGACAATGCTGCAGAGGGAC TCCACTGGACTAGCCACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATGGAGCAA CAAGCACAGCTAAGAGATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAGCGTCTGAAA CTTGCATCTGGCGAGATAACTGACGGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAAC TCCCAGCTGATTCAATTGCAACAGCTGCAAATACAGCAACAACAGTCATCGCAGACGACG CAGCAAGGTCAGCAACAACAGCCACAGAAATCCGCATAGATCAAGGTCCAAAAAGCTGGA CCTCCTATCGCAAAGCAGTTGATTTGAAATCATGATGAGCATGATGAAATTGAAGGATGA TGGTGATCCATGCTGGGAAAAGAAGAATCTTTTGCTTATATATATATATCTCAGACAGAT TGTAGGATAGGTATGGTGGTATAGCAGCAGAAGATGGGTCTTCTTTGCGAGTTCTTTTGT TCAAGGTGGTAAATGCCTTAGCTGGAGTATCCTATCTCATCGCATCGCATCGTATTATAC ATGAGTACCGTCGCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTT TCCATGGTGCTTTTGTACTTTCGTCCAGAGGATAGCGTATTACAATGTACCACAGTACTT ATGCTGGCTGTAATAGTGTAATTACCTATAGCGTTGCTTAAAAAAA



consensusID : consensus_13294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence
                              [ACGAGGGTAAGATGAGGTACATTCAAGAGCTTGAGCACAAGGTTCAGGTGTTGCAGACAGAGGCTACCACACTCTCAGCACAGTTGACAATGCTGCAGAGGGACTCCACTGGACTAGCCACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATGGAGCAACAAGCACAGCTAAGAGATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAGCGTCTGAAACTTGCAACTGGCGAGATAACTGACGGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAACTCCCAGCTGATTCAATTGCAACAGCTGCAAATACAGCAACAACAGTCATCGCAGACGACGCAGCAAGGTCAGCAACAACAGCCACAGAAATCCGCATAGATCAAGGTCCAAAAAGCTGGACCTCCTATCGCAAAGCAGTTGATTTGAAATCATGATGAGCATGATGAAATTGAAGGATGATGGTGATCCATGCTGGGAAAAGAAGAATCTTTTGCTTATATATATATATATATATATATATATATATATATATATATATATATATATATA]

[+] EMBL BP185048             [ACGAGGGTAAGATGAGGTACATTCAAGAGCTTGAGCACAAGGTTCAGGTGTTGCAGACAGAGGCTACCACACTCTCAGCACAGTTGACAATGCTGCAGAGGGACTCCACTGGACTAGCCACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATGGAGCAACAAGCACAGCTAAGAGATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAGCGTCTGAAACTTGCAACTGGCGAGATAACTGACGGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAACTCCCAGCTGATTCAATTGCAACAGCTGCAAATACAGCAACAACAGTCATCGCAGACGACGCAGCAAGGTCAGCAACAACAGCCACAGAAATCCGCATAGATCAAGGTCCAAAAAGCTGGACCTCCTATCGCAAAGCAGTTGATTTGAAATCATGATGAGCATGATGAAATTGAAGGATGATGGTGATCCATGCTGGGAAAAGAAGAATCTTTTGCTTATATATATATATATATATATATATATATATATATATATATATATATATATATA]


>consensus_13294#1 ACGAGGGTAAGATGAGGTACATTCAAGAGCTTGAGCACAAGGTTCAGGTGTTGCAGACAG AGGCTACCACACTCTCAGCACAGTTGACAATGCTGCAGAGGGACTCCACTGGACTAGCCA CTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATGGAGCAACAAGCACAGCTAAGAG ATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAGCGTCTGAAACTTGCAACTGGCGAGA TAACTGACGGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAACTCCCAGCTGATTCAAT TGCAACAGCTGCAAATACAGCAACAACAGTCATCGCAGACGACGCAGCAAGGTCAGCAAC AACAGCCACAGAAATCCGCATAGATCAAGGTCCAAAAAGCTGGACCTCCTATCGCAAAGC AGTTGATTTGAAATCATGATGAGCATGATGAAATTGAAGGATGATGGTGATCCATGCTGG GAAAAGAAGAATCTTTTGCTTATATATATATATATATATATATATATATATATATATATA TATATATATATATA



consensusID : consensus_13294#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 491
fasta sequence
                              [ATATATATATATATATATAA-ATATATTTATATATATATATATATATATATATATCTCAGACAGATTGTAGGATAGGTATGGTGGTATAGCAGCAGAAGATGGGTCTTCTGTTGCGAGTTCTTTTGTTCAAGGTGGTAAATGCCTTGGCTGGAGTATCCTATCTCATCGCAATCGCATCGTATTATACATGAGTACCAGTCGCTTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCTTTTGTACTTTTGTCCAAGAGGATAGCGTATTACAAATGTACAACAGTACTTATGCTGGCTGTAATAGTGTAATTACCTATAGCGTTGCTTAGTGTTTCCTGGAGCTTTACATCTCAATGGTATATACTCCTACCTTACATTTACCGGAAAGCAGCACAGAAATTTGTGATTGTACTTAGGTTTGATATTTATCTCACTTTTCAGATTGTTATATACTACTGCCTCCATTTCA]

[-] EMBL CB651593             [ATATATATATATATATATAA ATATATTTATATATATATATATATATATATATATCTCAGACAGATTGTAGGATAGGTATGGTGGTATAGCAGCAGAAGATGGGTCTTCTGTTGCGAGTTCTTTTGTTCAAGGTGGTAAATGCCTTGGCTGGAGTATCCTATCTCATCGCAATCGCATCGTATTATACATGAGTACCAGTCGCTTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCTTTTGTACTTTTGTCCAAGAGGATAGCGTATTACAAATGTACAACAGTACTTATGCTGGCTGTAATAGTGTAATTACCTATAGCGTTGCTTAGTGTTTCCTGGAGCTTTACATCTCAATGGTATATACTCCTACCTTACATTTACCGGAAAGCAGCACAGAAATTTGTGATTGTACTTAGGTTTGATATTTATCTCACTTTTCAGATTGTTATATACTACTGCCTCCATTTCA]
[+] EMBL BI800845             [                ATAATATA ATATA ATATA ATATATA ATA ATATATCTCAGACAGATTGTAGGATAGGTATGGTGGTATA CAGCAGAAGATGGGTCTTCTGTTGCGAGTTCTTTTGTTCAAGGTGGTAAAT CCTTAGCTGGAGTATCCTATCTCATCGCAATCGCATCGTATTATACATGAGTACCGGTCGCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCTTTTGTACTTTTGTCCAAGAGGATAGCGTATTACAAATGTACAACAGTACTTATGCTGGCTGTAATAGTGTAATTACCTATAGCGTTGCTTAGTGTTTCCTGGAaaaa                                                                                                                             ]


>consensus_13294#2 ATATATATATATATATATAAATATATTTATATATATATATATATATATATATATCTCAGA CAGATTGTAGGATAGGTATGGTGGTATAGCAGCAGAAGATGGGTCTTCTGTTGCGAGTTC TTTTGTTCAAGGTGGTAAATGCCTTGGCTGGAGTATCCTATCTCATCGCAATCGCATCGT ATTATACATGAGTACCAGTCGCTTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAA AGATTCTTTCCATGGTGCTTTTGTACTTTTGTCCAAGAGGATAGCGTATTACAAATGTAC AACAGTACTTATGCTGGCTGTAATAGTGTAATTACCTATAGCGTTGCTTAGTGTTTCCTG GAGCTTTACATCTCAATGGTATATACTCCTACCTTACATTTACCGGAAAGCAGCACAGAA ATTTGTGATTGTACTTAGGTTTGATATTTATCTCACTTTTCAGATTGTTATATACTACTG CCTCCATTTCA



consensusID : consensus_13294#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence
                              [ATAATATATATATATATATATATAGATATATATATATATATATATATATCTCAGCCCGATTGTAGGATAGGTATGGTGGTATACCCCGAAGATGGGTCTTCTGTTGCGAGTTCTTTTGTTCAAGGTGGTAAATCCCTTAGCTGGAGTATCCTATCTCATCGCCATCGCATCGTATTATACATGAGTACCGGTCGCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCCTGGTGCTTTTGTACTTTTGTCCCAGAGGATAGCGTATTACCAATGTACCACCGTACTTATGCTGGCCTGTAATAGTGTAATTACCTATAGCGTTGCTTAAAAAAAAAA]

[+] EMBL BI800463             [ATAATATATATATATATATATATAGATATATATATATATATATATATATCTCAGCCCGATTGTAGGATAGGTATGGTGGTATACCCCGAAGATGGGTCTTCTGTTGCGAGTTCTTTTGTTCAAGGTGGTAAATCCCTTAGCTGGAGTATCCTATCTCATCGCCATCGCATCGTATTATACATGAGTACCGGTCGCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCCTGGTGCTTTTGTACTTTTGTCCCAGAGGATAGCGTATTACCAATGTACCACCGTACTTATGCTGGCCTGTAATAGTGTAATTACCTATAGCGTTGCTTAAAAAAAAAA]


>consensus_13294#3 ATAATATATATATATATATATATAGATATATATATATATATATATATATCTCAGCCCGAT TGTAGGATAGGTATGGTGGTATACCCCGAAGATGGGTCTTCTGTTGCGAGTTCTTTTGTT CAAGGTGGTAAATCCCTTAGCTGGAGTATCCTATCTCATCGCCATCGCATCGTATTATAC ATGAGTACCGGTCGCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCT TTCCCTGGTGCTTTTGTACTTTTGTCCCAGAGGATAGCGTATTACCAATGTACCACCGTA CTTATGCTGGCCTGTAATAGTGTAATTACCTATAGCGTTGCTTAAAAAAAAAA



consensusID : consensus_13294#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence
                              [ACATATATATATNTATATACATATATATATATCTCCAGACCAGATTGTAGGATAGGTATGGTGGTATAGCAGCAGAAGATGGGTCTNCTGTTGCGAGTTTTTTTGTTCAAGGTGGTAAATGCCTTGGCTGGAGTATCCTATCTCATCGCAATCGCATCGTATTATNCATGAGTACCAGTCGCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCTTTTGTACTTTTGTCCAAGAGGATAGCGTATTACAAATGTACAACAGTACTTATGCTGGCTGTAATAGTGTAATTACCTATAAAAAAAAAAAAAA]

[+] EMBL AU163783             [ACATATATATATNTATATACATATATATATATCTCCAGACCAGATTGTAGGATAGGTATGGTGGTATAGCAGCAGAAGATGGGTCTNCTGTTGCGAGTTTTTTTGTTCAAGGTGGTAAATGCCTTGGCTGGAGTATCCTATCTCATCGCAATCGCATCGTATTATNCATGAGTACCAGTCGCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCTTTTGTACTTTTGTCCAAGAGGATAGCGTATTACAAATGTACAACAGTACTTATGCTGGCTGTAATAGTGTAATTACCTATAAAAAAAAAAAAAA]


>consensus_13294#4 ACATATATATATNTATATACATATATATATATCTCCAGACCAGATTGTAGGATAGGTATG GTGGTATAGCAGCAGAAGATGGGTCTNCTGTTGCGAGTTTTTTTGTTCAAGGTGGTAAAT GCCTTGGCTGGAGTATCCTATCTCATCGCAATCGCATCGTATTATNCATGAGTACCAGTC GCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCTT TTGTACTTTTGTCCAAGAGGATAGCGTATTACAAATGTACAACAGTACTTATGCTGGCTG TAATAGTGTAATTACCTATAAAAAAAAAAAAAA



consensusID : consensus_13294#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence
                              [TCGCAGAGCGATATCCCCTTCGGGTTCTCGCACCTGAGCCCGCCCCTGCCGCCTCCCGCGCCCGTNAAGCGGAAGGCCGCCACGGCGCGGAGGGGTGCAGATCGGACGGCGATGACTTCGCCTTGTACGACCTCGTCAACTCCTACATGGACCTCGACGGGATGGAGGCTCTCAACTCCTCCGAGGAGCGGCACGAGGACCGCGACACNGCGCCAGGAACCGCGCACCGGGAGCGTTGCCGANAAGCAGCCAGAACGAGGCCGANAGCAATTGACTCCAGTTGAGAAGAAAGACGGAGGAGGCAAATCCGGCATTCCGCAGCTTA]

[+] EMBL C73556               [TCGCAGAGCGATATCCCCTTCGGGTTCTCGCACCTGAGCCCGCCCCTGCCGCCTCCCGCGCCCGTNAAGCGGAAGGCCGCCACGGCGCGGAGGGGTGCAGATCGGACGGCGATGACTTCGCCTTGTACGACCTCGTCAACTCCTACATGGACCTCGACGGGATGGAGGCTCTCAACTCCTCCGAGGAGCGGCACGAGGACCGCGACACNGCGCCAGGAACCGCGCACCGGGAGCGTTGCCGANAAGCAGCCAGAACGAGGCCGANAGCAATTGACTCCAGTTGAGAAGAAAGACGGAGGAGGCAAATCCGGCATTCCGCAGCTTA]


>consensus_13294#5 TCGCAGAGCGATATCCCCTTCGGGTTCTCGCACCTGAGCCCGCCCCTGCCGCCTCCCGCG CCCGTNAAGCGGAAGGCCGCCACGGCGCGGAGGGGTGCAGATCGGACGGCGATGACTTCG CCTTGTACGACCTCGTCAACTCCTACATGGACCTCGACGGGATGGAGGCTCTCAACTCCT CCGAGGAGCGGCACGAGGACCGCGACACNGCGCCAGGAACCGCGCACCGGGAGCGTTGCC GANAAGCAGCCAGAACGAGGCCGANAGCAATTGACTCCAGTTGAGAAGAAAGACGGAGGA GGCAAATCCGGCATTCCGCAGCTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13294#0      TCGGACGGCGATGACTTCGCCTTGTACGACCTCGTCAACTCCTACATGGACCTCGACGGG 60
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      ATGGAGGCTCTCAACTCCTCCGAGGAGCGGCACGAGGACCGCGACAGCCGCGCCAGCGGC 120
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      ACGCGCACCGGGAGCGTGGCCGACAGCAGCGAGAACGAGGCCGAGAGCCACTCGACTCCA 180
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      GTGGAGAGGAAGGACGGAGGAGGCAAATCCCGGCATTGCCGCAGCTTATCGGTGGACAGC 240
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      TTCATCGAGAAGCTCAACTTCGACGAGTCACCGAAGCTGCCACTGCCGTCTCCCAGCGGT 300
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      GGCCTATCCAGAAGCGGGAGCGGGTCCTTGGATGGCGGCGCTGCATCTCTGTTTGGTGCT 360
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      GAGTTTGCCAATGGGGAGTTCACTGAAGCTGAGAAGAAGAAGATCATGGCAAATGAGCGC 420
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      CTTGCCGAGATCGCTTTGACTGATCCTAAGAGGGTTAAAAGAATTTTGGCAAATCGGCAG 480
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      TCTGCGGCAAGGTCAAAGGAGCGTAAGATGAGGTACA-TTCAAGAGCTTGAGCACAAGG- 538
consensus_13294#1      ----------------ACGAGGGTAAGATGAGGTACA-TTCAAGAGCTTGAGCACAAGG- 42
consensus_13294#2      ------------ATATATATATATATATATAAATATA-TTTATATATATATATATATA-- 45
consensus_13294#4      --------------------------------ACATA-TATATATNTATATACATATA-- 25
consensus_13294#3      -----------------ATAATATATATATATATATA-TATAGATATATATATATATA-- 40
consensus_13294#5      --------------------TCGCAGAGCGATATCCCCTTCGGGTTCTCGCACCTGAGCC 40
                                                             *                     

consensus_13294#0      TTCAGGTGTTGCAGACAGAGGCTACCACACTCTCAGC-ACAGTTG-ACAAT--GCTGCAG 594
consensus_13294#1      TTCAGGTGTTGCAGACAGAGGCTACCACACTCTCAGC-ACAGTTG-ACAAT--GCTGCAG 98
consensus_13294#2      TATATATATCTCAGACAGATTGTAGGATA-----GGT-ATGGTGGTATAGCA-GCAGAAG 98
consensus_13294#4      TATATATCTCCAGACCAGATTGTAGGATA-----GGT-ATGGTGGTATAGCA-GCAGAAG 78
consensus_13294#3      TATATATATCTCAGCCCGATTGTAGGATA-----GGT-ATGGTGGTATACC---CCGAAG 91
consensus_13294#5      CGCCCCTGCCGCCTCCCGCGCCCGTNAAGCGGAAGGCCGCCACGGCGCGGAGGGGTGCAG 100
                             *        * *        *        *        *           * **

consensus_13294#0      AGGGACTCCACTGGACTAGCCACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATG 654
consensus_13294#1      AGGGACTCCACTGGACTAGCCACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATG 158
consensus_13294#2      ATGGGTCTTCTGTTGCGAGTTCTTTTGTTCAAGGTGGTAAATGCC------TTGGC--TG 150
consensus_13294#4      ATGGGTCTNCTGTTGCGAGTTTTTTTGTTCAAGGTGGTAAATGCC------TTGGC--TG 130
consensus_13294#3      ATGGGTCTTCTGTTGCGAGTTCTTTTGTTCAAGGTGGTAAATCCC------TTAGC--TG 143
consensus_13294#5      ATCGGACGGCGATGACT--TCGCCTTGTACGACCTCGTCAACTCCTA--CATGGACCTCG 156
                       *  *           *          *  * *     * **   *          *   *

consensus_13294#0      GAGCAACAAGCACAGCTAAGAGATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAGCGT 714
consensus_13294#1      GAGCAACAAGCACAGCTAAGAGATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAGCGT 218
consensus_13294#2      GAGTATCCTATCTCATCGCAAT-CGCATCGTATTATACATGAGTACCAGTCGCTTGGC-- 207
consensus_13294#4      GAGTATCCTATCTCATCGCAAT-CGCATCGTATTATNCATGAGTACCAGTCGCCTGGC-- 187
consensus_13294#3      GAGTATCCTATCTCATCGCCAT-CGCATCGTATTATACATGAGTACCGGTCGCCTGGC-- 200
consensus_13294#5      ACGGGATGGAGGCTCTCAACTCCTCCGAGGAGCGGCACGAGGA---CCGCGACACNGCGC 213
                         *                      *   *       *        * *       **  

consensus_13294#0      CTGAAACTTGCATCTGGCGAGATAACTGACGGTCGTATGTCAAAGGGCCTACA-GCAGCA 773
consensus_13294#1      CTGAAACTTGCAACTGGCGAGATAACTGACGGTCGTATGTCAAAGGGCCTACA-GCAGCA 277
consensus_13294#2      CTGAA--------TAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCT 259
consensus_13294#4      CTGAA--------TAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCT 239
consensus_13294#3      CTGAA--------TAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCCTGGTGCT 252
consensus_13294#5      CAGGAACCGCGCACCGGGAGCGTTGCCGANAAGCAGCCAGAACGAGGCCGANA----GCA 269
                       * * *          **     *          *       *               ** 

consensus_13294#0      GATGAACTCCCAGCTGATTCAATTGCAACAGCTGCAAATACAGCAACAACAGTCATCGCA 833
consensus_13294#1      GATGAACTCCCAGCTGATTCAATTGCAACAGCTGCAAATACAGCAACAACAGTCATCGCA 337
consensus_13294#2      TTTGTACTTTTGTCCAAGAGGATAGCGT--ATTACAAATGTA-CAACAGTACTTATGCTG 316
consensus_13294#4      TTTGTACTTTTGTCCAAGAGGATAGCGT--ATTACAAATGTA-CAACAGTACTTATGCTG 296
consensus_13294#3      TTTGTACTTTTGTCCCAGAGGATAGCGT--ATTACCAATGTA-CCACCGTACTTATGCTG 309
consensus_13294#5      ATTG-ACTCCAGTTGAGAAGAAAGACGGAGGAGGCAAATCCG---GCATTCCGCAGCTTA 325
                         ** ***             *   *        * ***       *       *     

consensus_13294#0      GA-CGACGCAGCAAGGTCAGCAACAACAGC-CACAGAAATCCGCATAGATCAAGGTCCAA 891
consensus_13294#1      GA-CGACGCAGCAAGGTCAGCAACAACAGC-CACAGAAATCCGCATAGATCAAGGTCCAA 395
consensus_13294#2      GC-TGTAATAGTGTAATTACCTATAGCGTTGCTTAGTGTTTCCTGGAGCTTTACATCTCA 375
consensus_13294#4      GC-TGTAATAGTGTAATTACCTATAAAAAAAAAAAAAA---------------------- 333
consensus_13294#3      GCCTGTAATAGTGTAATTACCTATAGCGTTGCTTAAAAAAAAAA---------------- 353
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      AAAGCTGGACCTCCTATCGCAAAGCAGTTGATTTGAAATCATGATGAGCATGATGAAATT 951
consensus_13294#1      AAAGCTGGACCTCCTATCGCAAAGCAGTTGATTTGAAATCATGATGAGCATGATGAAATT 455
consensus_13294#2      ATGGTATATACTCCTACCTTACATTTACCGGAAAGCAGCACAGAAATTTGTGATTGTACT 435
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      GAAGGATGATGGTGATCCATGCTGGGAAAAGAAGAATCTTTTGCTTATATATATATATCT 1011
consensus_13294#1      GAAGGATGATGGTGATCCATGCTGGGAAAAGAAGAATCTTTTGCTTATATATATATATAT 515
consensus_13294#2      TAGGTTTGATATTTATCTCACTTTTCAGATTGTTATATACTACTGCCTCCATTTCA---- 491
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      CAGACAGATTGTAGGATAGGTATGGTGGTATAGCAGCAGAAGATGGGTCTTCTTTGCGAG 1071
consensus_13294#1      -ATATATATATATATATATATATATATATATATATATATA-------------------- 554
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      TTCTTTTGTTCAAGGTGGTAAATGCCTTAGCTGGAGTATCCTATCTCATCGCATCGCATC 1131
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      GTATTATACATGAGTACCGTCGCCTGGCCTGAATAGGAGGCATCGTGTTTAGTCCTATGA 1191
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      AAGATTCTTTCCATGGTGCTTTTGTACTTTCGTCCAGAGGATAGCGTATTACAATGTACC 1251
consensus_13294#1      ------------------------------------------------------------
consensus_13294#2      ------------------------------------------------------------
consensus_13294#4      ------------------------------------------------------------
consensus_13294#3      ------------------------------------------------------------
consensus_13294#5      ------------------------------------------------------------
                                                                                   

consensus_13294#0      ACAGTACTTATGCTGGCTGTAATAGTGTAATTACCTATAGCGTTGCTTAAAAAAA 1306
consensus_13294#1      -------------------------------------------------------
consensus_13294#2      -------------------------------------------------------
consensus_13294#4      -------------------------------------------------------
consensus_13294#3      -------------------------------------------------------
consensus_13294#5      -------------------------------------------------------
                                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)