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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 850 fasta sequence
[CAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTGAGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTTTCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGGTAAGGAACTTACGGGCTTCTTATACTTCTTTTGTTCCGTTGATATGGTAGTGCCAATGGATTCACGCACTTGTTGCTTTTTTTATGGGTAGGGTTAGATCTGTCGGATTATTGCAGTAGTCTTTGCATGGTCATACATTCGGTGGCCATTCATTAGGGAGTATTACTTACCATGATGTCCATGATGTACACTTGATCTTTTAGTTTCTTAAACTTAAATTAATTTTTGAATCAAGTTATATCGCGAACTTTGCGCTTTCCAAATTCCAATAGTTCATTTTTTGTTCAGTTATCAAGTCCACATTGTTTGTTCACTATTTTGAATATTTTTTATCCTGTAAATATGCTGAAATTGAATGTTGACATAGATTGCTGCTGTTTTCAATGAATATATATATGCAGTTATGCACTGCCATCCCATTTCCCTCTGTTCAACCTTGTATGTGATTACTACCAACCTTGTATATGTCTACTGCATATGTTTAATAGCCATCCTGTGTATCTTA]
[+] EMBL CB674530 [CAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTGAGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTTTCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGGTAAGGAACTTACGGGCTTCTTATACTTCTTTTGTTCCGTTGATATGGTAGTGCCAATGGATTCACGCACTTGTTGCTTTTTTTATGGGTAGGGTTAGATCTGTCGGATTATTGCAGTAGTCTTTGCATGGTCATACATTCGGTGGCCATTCATTAGGGAGTATTACTTACCATGATGTCCATGATGTACACTTGATCTTTTAGTTTCTTAAACTTAAATTAATTTTTGAATCAAGTTATATCGCGAACTTTGCGCTTTCCAAATTCCAATAGTTCATTTTTTGTTCAGTTATCAAGTCCACATTGTTTGTTCACTATTTTGAATATTTTTTATCCTGTAAATATGCTGAAATTGAATGTTGACATAGATTGCTGCTGTTTTCAATGAATATATATATGCAGTTATGCACTGCCATCCCATTTCCCTCTGTTCAACCTTGTATGTGATTACTACCAACCTTGTATATGTCTACTGCATATGTTTAATAGCCATCCTGTGTATCTTA]
consensusID : consensus_13297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 836 fasta sequence
[AGTTTTTTTTTTTTTTTTTTTTTTTTGCAGAAGACCACTACTACTAAAAATTTGAAAGCCTTAAAAATACGAACAGCACAATAGATCAATTTGGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGGCGTAGTTCCCGACAAAGAAAAGCAGCAGGGAAGGTCGCGACCACAATCAGGACTATATTTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGACCAGAAAACAAATCTATCAAGCACTATGCATGACAAAAGGGCACTGCAATTTAAATGTATGTGACTTCTTTATCGAAAAAAACTATGAGGCTTGCAGGGTTAGAAAAAATTAACCCTTCCCTAGGAGTATATGTTACAAGTTACTAGACCCCTAGAGCCAGAGCAAAGATATCTGTGGACATGGATGAGTCTGCCAATATTGCCTTGATAGATCTCCATCACAGATAATTCAAAGCTAAATACAATAATTTGTCTGTATAGCACCCCTTCTGTAATTTTTGAAAGTTGGACCCCCCCCAAAATAAGCTATTACTAGGATTGCTTCTTCAACATTACAAC]
[+] EMBL CA758230 [AGTTTTTTTTTTTTTTTTTTTTTTTTGCAGAAGACCACTACTACTAAAAATTTGAAAGCCTTAAAAATACGAACAGCACAATAGATCAATTTGGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGGCGTAGTTCCCGACAAAGAAAAGCAGCAGGGAAGGTCGCGACCACAATCAGGACTATATTTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGACCAGAAAACAAATCTATCAAGCACTATGCATGACAAAAGGGCACTGCAATTTAAATGTATGTGACTTCTTTATCGAAAAAAACTATGAGGCTTGCAGGGTTAGAAAAAATTAACCCTTCCCTAGGAGTATATGTTACAAGTTACTAGACCCCTAGAGCCAGAGCAAAGATATCTGTGGACATGGATGAGTCTGCCAATATTGCCTTGATAGATCTCCATCACAGATAATTCAAAGCTAAATACAATAATTTGTCTGTATAGCACCCCTTCTGTAATTTTTGAAAGTTGGACCCCCCCCAAAATAAGCTATTACTAGGATTGCTTCTTCAACATTACAAC]
[-] EMBL OSS15210A [ AGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCG ]
consensusID : consensus_13297#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence
[TCTTTTTTTTAATACGAACAGCACAATAGATCAATTTGGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGCGTAGTTCCCGACAAAGAAAAGCAGCAGGAAGGTCGCGACCACAATCAGGACTATCATTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGACCAGAAAACAAATCTATCAAGCACTATGCATGACAAAAGGGCACTGCAATTTAAATGTATGTGACTTCTTTATCGAAAAAATACTATGAGGCTTGCAGGGTTAGAAGAAGTTAACCCTTCCATAGGAGTATATGTTACAAGTTACTAGACACATAGAGCCAGAGCAGAGATATCTGTGGACATGGATGAGTCTGCACATATTGCCATGTATAGATCTCCATACACAGATAATTCGAAAGCTAGATAACAATTATTTGTACTGTATAGTCACCCACATCTGTAGTTCTGTACAGTTTGATCACAGCACAAAATAAAGCTTATTACTAAGGATTGCATGTTTTCAACACTAGCAAC]
[+] EMBL CB674531 [TCTTTTTTTTAATACGAACAGCACAATAGATCAATTTGGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGCGTAGTTCCCGACAAAGAAAAGCAGCAGGAAGGTCGCGACCACAATCAGGACTATCATTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGACCAGAAAACAAATCTATCAAGCACTATGCATGACAAAAGGGCACTGCAATTTAAATGTATGTGACTTCTTTATCGAAAAAATACTATGAGGCTTGCAGGGTTAGAAGAAGTTAACCCTTCCATAGGAGTATATGTTACAAGTTACTAGACACATAGAGCCAGAGCAGAGATATCTGTGGACATGGATGAGTCTGCACATATTGCCATGTATAGATCTCCATACACAGATAATTCGAAAGCTAGATAACAATTATTTGTACTGTATAGTCACCCACATCTGTAGTTCTGTACAGTTTGATCACAGCACAAAATAAAGCTTATTACTAAGGATTGCATGTTTTCAACACTAGCAAC]
consensusID : consensus_13297#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence
[TCGAATCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTGAGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTTTCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAAAAAAA]
[+] EMBL AK121205 [TCGAATCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTGAGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTTTCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGA ]
[-] EMBL CF281908 [ TCAGAAGACGTTTCCTCCTCGC AAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTTTTTGCCCCAGGAGAGTGAAGAGAGCCCCCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTTTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGACCCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAAAAAAA]
consensusID : consensus_13297#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 769 fasta sequence
[TCGAATCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCA-GGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTTTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGAACCTTAGCCCAAATTGATCTATTGTGCTGTTCGTATTTTTAAGGCTTTCAA-----ATTTTTAGTAGTAGTGGTCTTCTGCAAAAAAAAAAAAAGAAAAAAAAA]
[+] EMBL CF281890 [TCGAATCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCA GGAGAGTG ]
[-] EMBL CF281891 [ AGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCA GGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTTTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGAACCTTAGCCCAAATTGATCTATTGTGCTGTTCGTATTTTTAAGGCTTTCAA ATTTTTAGTAGTAGTGGTCTTCTGCAAAAAAAAAAAAAGAAAAAAAAA]
[+] EMBL BI798809 [ GTCACCCAT GCGGATCAGTTC CGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGT GTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGC AAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCACGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAACTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCCAACGGTTGAACCTTAGCCC AATTGATCTATTGTGCTGTTCGTATTTTTAAGGCTTTCAAACTGCATTTCTAGTAGTAGTGGTCTTCTGCCAAAAAAAAAA ]
consensusID : consensus_13297#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence
[CTGAAGGAGTAGAAACTCCTTTTTCGAATCCTCGTCCTGCCGTCTTTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACATTTTTTTAGTGCAGCAGCTGCCGTATGCTAAATAAAATATCT-AAAAATGAGAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGGGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAA]
[+] EMBL CF279075 [CTGAAGGAGTAGAAACTCCTTTTTCGAATCCTCGTCCTGCCGTCTTTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACATTTTTTTAGTGCAGCAGCTGCCGTATGCTAAATAAAATATCT AAAAATGAGAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGGGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTT ]
[-] EMBL CF279074 [ GGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGGGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAA]
consensusID : consensus_13297#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[NGAATCGGCTGGGNCGANTNCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGTAACATAAAATATCTAAAAAAGGAGAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGNACCCTGGAATGATAGTCCTGATTTTGGTCCGGGACCTTCCTGCTTNTTTTCTTTGTCGGGGACTACGGTCTCTATGTGTACGNTCAGAAGCGGTTTCCTCCTCGGAAAAAGAGGCAGTTTCGAGAAGAAGTTAAGN]
[+] EMBL OSS4662A [NGAATCGGCTGGGNCGANTNCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGTAACATAAAATATCTAAAAAAGGAGAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGNACCCTGGAATGATAGTCCTGATTTTGGTCCGGGACCTTCCTGCTTNTTTTCTTTGTCGGGGACTACGGTCTCTATGTGTACGNTCAGAAGCGGTTTCCTCCTCGGAAAAAGAGGCAGTTTCGAGAAGAAGTTAAGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13297#4 -----------------------TCGAATCC-TCGTCCTGCCGTCTCTCAGAACTCCCCC 36
consensus_13297#5 CTGAAGGAGTAGAAACTCCTTTTTCGAATCC-TCGTCCTGCCGTCTTTCAGAACTCCCCC 59
consensus_13297#6 ----------NGAATCGGCTGGGNCGANTNCCTCGTCCTGCCGTCTCTCAGAACTCCCCC 50
consensus_13297#3 -----------------------TCGAATCC-TCGTCCTGCCGTCTCTCAGAACTCCCCC 36
consensus_13297#0 ------------------------------------------------CAGAACTCCCCC 12
consensus_13297#1 ----------------AGTTTTTTTTTTTTTTTTTTTTTTTTGCAGAAGACCACTACTAC 44
consensus_13297#2 ------------------------------------------------------------
consensus_13297#4 AAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCT 96
consensus_13297#5 AAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCT 119
consensus_13297#6 AAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCT 110
consensus_13297#3 AAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCT 96
consensus_13297#0 AAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCT 72
consensus_13297#1 TAAAAATTTGAAAGCCTTAAAAATACGAACAGCACAATAG-ATCAATTTGGGCTAAGGTT 103
consensus_13297#2 -----------TCTTTTTTTTAATACGAACAGCACAATAG-ATCAATTTGGGCTAAGGTT 48
** * ** ** **** **** * * *
consensus_13297#4 TAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGA 156
consensus_13297#5 TAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACATTTTT 179
consensus_13297#6 TAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGA 170
consensus_13297#3 TAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGA 156
consensus_13297#0 TAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGA 132
consensus_13297#1 CAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCA-----CTATATAAAGCTTA 158
consensus_13297#2 CAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCA-----CTATATAAAGCTTA 103
***** * * * ** * * * * * * ** *** * * * *
consensus_13297#4 -ATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAG---------- 205
consensus_13297#5 -TTAGTGCAGCAGCTGCCGTATGCTAAATAAAATATCTAAAAATGAG------------- 225
consensus_13297#6 -ATAGTGCAGCAGCTGCCGTA-GTAACATAAAATATCTAAAAAAGGAG------------ 216
consensus_13297#3 -ATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTG 215
consensus_13297#0 -ATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTG 191
consensus_13297#1 TACAGAACA-TAGTAACTGTAAGC--ACTGCGGTTCCAGCTGATATATATCCTGTTTTCT 215
consensus_13297#2 TACAGAACA-TAGTAACTGTAAGC--ACTGCGGTTCCAGCTGATATATATCCTGTTTTCT 160
** ** ** * *** * * * * *
consensus_13297#4 ------------------------------------------------------------
consensus_13297#5 ------------------------------------------------------------
consensus_13297#6 ------------------------------------------------------------
consensus_13297#3 AGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTT 275
consensus_13297#0 AGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTT 251
consensus_13297#1 AACAAGCGAAGAGGGTCGTCTGA------ATCAAATCAGCAACATCATAACTGGTGGCTC 269
consensus_13297#2 AACAAGCGAAGAGGGTCGTCTGA------ATCAAATCAGCAACATCATAACTGGTGGCTC 214
consensus_13297#4 --------------AGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGG 251
consensus_13297#5 ------------------------------------AGAGTTGCAGGTGTTTGGTCCCGG 249
consensus_13297#6 ------------------------------------AGAGTTGCAGGTGTTTGGTCCCGG 240
consensus_13297#3 TCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGG 335
consensus_13297#0 TCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGG 311
consensus_13297#1 TCTTCACTCTCCTGGGGCAGA----------GACACCTTGCTTCAGTTTTTCCCTCTTCA 319
consensus_13297#2 TCTTCACTCTCCTGGGGCAGA----------GACACCTTGCTTCAGTTTTTCCCTCTTCA 264
* * *** * ** **
consensus_13297#4 TCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAAC 311
consensus_13297#5 TCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAAC 309
consensus_13297#6 TCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAAC 300
consensus_13297#3 TCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAAC 395
consensus_13297#0 TCAGCCATGGCGGATCAGTTCGCGGACTCTGCGG-TAAGGAACTTACGGGCTTCTTATAC 370
consensus_13297#1 TCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACAT 379
consensus_13297#2 TCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACAT 324
** * ** * * * * * * * * * *
consensus_13297#4 AAGGGA---CTGAACCCTGGAATGATAGTCCTGATTGTGGTC-GCGACCTTCCTGCTGCT 367
consensus_13297#5 AAGGGA---CTGAACCCTGGAATGATAGTCCTGATTGTGGTC-GCGACCTTCCTGCTGCT 365
consensus_13297#6 AAGGGA---CTGNACCCTGGAATGATAGTCCTGATTTTGGTCCGGGACCTTCCTGCTTNT 357
consensus_13297#3 AAGGGA---CTGAACCCTGGAATGATAGTCCTGATTGTGGTC-GCGACCTTCCTGCTGCT 451
consensus_13297#0 TTCTTT---TGTTCCGTTGATATGGTAGTGCCAATG--GATTCACGCACTTGTTGCTTTT 425
consensus_13297#1 AGAGAGGCGTAGTTCCCGACAAAGAAAAGCAGCAGGGAAGGTCGCGACCACAATCAGGAC 439
consensus_13297#2 AGAGAG-CGTAGTTCCCGACAAAGAAAAGCAGCAGG-AAGGTCGCGACCACAATCAGGAC 382
* * * * * * * *
consensus_13297#4 TTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAA 427
consensus_13297#5 TTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAA 425
consensus_13297#6 TTTCTTTGTCGGGGACTACGGTCTCTATGTGTACGNTCAGAAGCGGTTTCCTCCTCGGAA 417
consensus_13297#3 TTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAA 511
consensus_13297#0 TTTATGGGTAGGG---TTAGATCTGTCGGATTAT-TGCAGTAGTCTTTGCATGGTCATAC 481
consensus_13297#1 TATATTTCCAGGG--TTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGA 497
consensus_13297#2 TATCATTCCAGGG--TTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGA 440
* * *** * * * * ** * *
consensus_13297#4 AA--AGAAGCCAGTCTCGAAGAAGAA------GATGAAGAGGGAAAAACTGAAGCAAGGT 479
consensus_13297#5 AA--AGAAGCCAGTCTCGAAGAAGAA------GATGAAGAGGGAAAAACTGAAGCAAGGT 477
consensus_13297#6 AA--AGAGGC-AGTTTCGA-GAAGAA------GTTAAGN--------------------- 446
consensus_13297#3 AA--AGAAGCCAGTCTCGAAGAAGAA------GATGAAGAGGGAAAAACTGAAGCAAGGT 563
consensus_13297#0 ATTCGGTGGCCATTCATTAGGGAGTATTACTTACCATGATGTCCATGATGTACACTTGAT 541
consensus_13297#1 CCAGAAAACAAATCTATCAAGCACTATG----CATGACAAAAGGGCACTGCAATTTAAAT 553
consensus_13297#2 CCAGAAAACAAATCTATCAAGCACTATG----CATGACAAAAGGGCACTGCAATTTAAAT 496
* * * * *
consensus_13297#4 GTCTCTGCCCCAGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGA 539
consensus_13297#5 GTCTCTGCCCCAGGAGGGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGA 537
consensus_13297#6 ------------------------------------------------------------
consensus_13297#3 GTCTCTGCCCCAGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGA 623
consensus_13297#0 CTTTTAGTTTCTTAAACTTAAATTAATTTTTGAATCAAGTTATATCGCGAACTTTGCGCT 601
consensus_13297#1 GTATGTGACTTCTTTATCGAAAAAA-ACTATGAGGCTTGCAGGGTTAGAAAAAATTAACC 612
consensus_13297#2 GTATGTGACTTCTTTATCGAAAAAATACTATGAGGCTTGCAGGGTTAGAAGAAGTTAACC 556
consensus_13297#4 CGACCCTTTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAG 599
consensus_13297#5 CGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAG 597
consensus_13297#6 ------------------------------------------------------------
consensus_13297#3 CGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAG 683
consensus_13297#0 TTCCAAATTCCAATAGTTCATTTTTTGTTCAGTTATCAAGTCCACATTGTTTGTTCACTA 661
consensus_13297#1 CTTCCCTAGGAGTATAT---GTTACAAGTTACTAGACCCCTAGAGCCAGAGCAAAGATAT 669
consensus_13297#2 CTTCCATAGGAGTATAT---GTTACAAGTTACTAGACACATAGAGCCAGAGCAGAGATAT 613
consensus_13297#4 TTACTA-TGTTCTGTATAAGCTTTATATAGTGATT-CTCCGTTATTGGACA-ACTTATTT 656
consensus_13297#5 TTACTA-TGTTCTGTATAAGCTTTATATAGTGATT-CTCCGTTATTGGACA-ACTTATTT 654
consensus_13297#6 ------------------------------------------------------------
consensus_13297#3 TTACTA-TGTTCTGTATAAGCTTTATATAGTGATT-CTCCGTTATTGGACA-ACTTATTT 740
consensus_13297#0 TTTTGAATATTTTTTATCCTGTAAATATGCTGAAA-TTGAATGTTGACATA-GATTGCTG 719
consensus_13297#1 CTGTGGACATGGATGAGTCTGCCAATATTGCCTTG-ATAGATCTCCAT-CACAGATAATT 727
consensus_13297#2 CTGTGGACATGGATGAGTCTGCACATATTGCCATGTATAGATCTCCATACACAGATAATT 673
consensus_13297#4 CAGCAAACGGTTGAACCTTAGCCCAAATTGATCTATTGTGCTGTTCGTATTTTTAAGGCT 716
consensus_13297#5 CAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAA-------------------------- 688
consensus_13297#6 ------------------------------------------------------------
consensus_13297#3 CAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAAAAAAA--------------------- 779
consensus_13297#0 CTGTTTTCAATGAATATATATATGCAGTTATGCACTGCCATCCCATTTCCCTCTGTTCAA 779
consensus_13297#1 C-AAAGCTAAATA-CAATAATTTGT-CTGTATAG-CACCC-CTTCTGTAATTTTTGAAAG 782
consensus_13297#2 CGAAAGCTAGATAACAATTATTTGTACTGTATAGTCACCCACATCTGTAGTTCTGTACAG 733
consensus_13297#4 TTCAAATTTTTAGTAGTAGTGGTCTTCTGCAAAAAAAAAAAAAGAAAAAAAAA------- 769
consensus_13297#5 ------------------------------------------------------------
consensus_13297#6 ------------------------------------------------------------
consensus_13297#3 ------------------------------------------------------------
consensus_13297#0 CCTTGTATGTGATTACTACCAACCTTGTATATGTCTACTGCATATGTTTAATAGCCATCC 839
consensus_13297#1 TTGGACCCCCCC-CAAAATAAG--CTATTACTA-GGATTGCTT--CTTCAACATTA-CAA 835
consensus_13297#2 TTTGATCACAGCACAAAATAAAGCTTATTACTAAGGATTGCATGTTTTCAACACTAGCAA 793
consensus_13297#4 -----------
consensus_13297#5 -----------
consensus_13297#6 -----------
consensus_13297#3 -----------
consensus_13297#0 TGTGTATCTTA 850
consensus_13297#1 C---------- 836
consensus_13297#2 C---------- 794
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||